BAC Information

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BAC

Clone NameB6Ng01-225I01
Chromosome19 (Build37)
Map Location 6,006,903 - 6,193,354
singlet/doubletdoublet
Overlap geneCapn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2
Upstream geneSlc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20
Downstream geneLOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225I01.bB6Ng01-225I01.g
ACCGA039679GA039680
length909887
definitionB6Ng01-225I01.b B6Ng01-225I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,192,407 - 6,193,354)(6,006,903 - 6,007,788)
sequence
gaattcttcattatgccagcttttgttgtgaaaacctagctccttattta
aaactattggttgattaaagaggcctgcagcctgtagctgggcagaagag
aggttggcagggcttcagtgcctgggcttggtgtctagggcagggaccac
agaggaaagtggaggaagaaggaaggtaccatggggtaggtggatcctga
gggcatgaccatgagagccagcctgttggcagaacatgacaaataatgtc
agggttactgacaggaaagtagacaaaatagcacagagggttgatatctg
cccagctctaattctttaaggcttattataaatataaaggttttgtgttt
tttatttgggaactaaatcatctaaggtggggtagaaacccccaaacaat
atttactgaaacaagcttgtgactagctaacaaccacttttgctaccccc
tattctgtgtcacttgcagcttatgcaccaggcagcataaacttgacaga
agaggaagctgaagcacttctgaaggagtgtatgtccatcaactactttg
ttagcctaacttcttcaagttatagagaggaagaaaccaagattataaac
ataagatcacactactgagtccatatgcatatgcatatgcatcccaacaa
agccttgagctcactaatgtggctactgtggcccagacctgcgtctcatt
cacaacaaccttcctgcctcagtctcccagagttctggtattgcatgcat
acactgtcacattctgtactcattccatcattttttcctctgtattatct
tacaccctttctgttcagcagagaaaaatctgtggcagcattataaaaga
tatgtgcagagcaagggggggtggggcggcagagtgagtggggctggagt
gagtcacaa
gaattcttttcagtggggcagagtagagctggagtacagaaaaaagttga
ggggagctgggggtgggggcatagagaggccattccacagtagtgacagt
caccatttgtgagaggggaaggtaggcggacagcgggtcagtgggtaaga
aggtgctggaatgaatgggcaggtgtttggataaacaacaaggctttctt
ccccgggccccagacagtctagcaagcccctttattaccatccataaaga
taagcagcattcaatcatgactatttgtctcccaaggaacacaacaggct
cagccaggtggccctgctcacccccctgccctgtctcccaaccactcacc
tgggtagttcctgcagcctccagcggtgcttccccgacgccaggtgccct
cgtaaaatgtggtattccaattccggagggtcctgctcttaagggcgtcc
ggtgtaaggttgcagatttccagtttggtgaattcacggatgaagtctcg
gaacgacatcctgagggcccaagggcagaggtgaaccacagtcctccatc
atgaactgggttttaggggagcaaggggggaaaatagtgttgcttaccag
aactccccatcctccatcttgaccctcagctgctctcgttcataggggtc
cactttgttccactcataggagctgtgggaagcagcactgctagggttgg
acaccacggacctatctaactttctgtccctgggtcctgtccaacctggc
gtgtttcagagcccagatcagcaggctttctctagggccacctcttgagg
tccttagagatccccatttaagggtccctcttctttttggggacagggtt
ctcactagctggatttgaactcatggagatacacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6192407_6193354
seq2: B6Ng01-225I01.b_44_952 (reverse)

seq1  TTGTGAGCCATCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTG-CTC  49
                                                | || |||
seq2  -----------------------------------------TTGTGACTC  9

seq1  ACTCCAGCCCCACTCACTCTGCCGCCCCA-CCCCCCTTGCTCTGCACATA  98
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTCCAGCCCCACTCACTCTGCCGCCCCACCCCCCCTTGCTCTGCACATA  59

seq1  TCTTTTATAATGCTGCCACAGATTTTTCTCTGCTGAACAGAAAGGGTGTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATAATGCTGCCACAGATTTTTCTCTGCTGAACAGAAAGGGTGTA  109

seq1  AGATAATACAGAGGAAAAAATGATGGAATGAGTACAGAATGTGACAGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATACAGAGGAAAAAATGATGGAATGAGTACAGAATGTGACAGTGT  159

seq1  ATGCATGCAATACCAGAACTCTGGGAGACTGAGGCAGGAAGGTTGTTGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCAATACCAGAACTCTGGGAGACTGAGGCAGGAAGGTTGTTGTG  209

seq1  AATGAGACGCAGGTCTGGGCCACAGTAGCCACATTAGTGAGCTCAAGGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACGCAGGTCTGGGCCACAGTAGCCACATTAGTGAGCTCAAGGCT  259

seq1  TTGTTGGGATGCATATGCATATGCATATGGACTCAGTAGTGTGATCTTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGATGCATATGCATATGCATATGGACTCAGTAGTGTGATCTTAT  309

seq1  GTTTATAATCTTGGTTTCTTCCTCTCTATAACTTGAAGAAGTTAGGCTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAATCTTGGTTTCTTCCTCTCTATAACTTGAAGAAGTTAGGCTAA  359

seq1  CAAAGTAGTTGATGGACATACACTCCTTCAGAAGTGCTTCAGCTTCCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGTTGATGGACATACACTCCTTCAGAAGTGCTTCAGCTTCCTCT  409

seq1  TCTGTCAAGTTTATGCTGCCTGGTGCATAAGCTGCAAGTGACACAGAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAGTTTATGCTGCCTGGTGCATAAGCTGCAAGTGACACAGAATA  459

seq1  GGGGGTAGCAAAAGTGGTTGTTAGCTAGTCACAAGCTTGTTTCAGTAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGCAAAAGTGGTTGTTAGCTAGTCACAAGCTTGTTTCAGTAAAT  509

seq1  ATTGTTTGGGGGTTTCTACCCCACCTTAGATGATTTAGTTCCCAAATAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGGGGGTTTCTACCCCACCTTAGATGATTTAGTTCCCAAATAAA  559

seq1  AAACACAAAACCTTTATATTTATAATAAGCCTTAAAGAATTAGAGCTGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAACCTTTATATTTATAATAAGCCTTAAAGAATTAGAGCTGGG  609

seq1  CAGATATCAACCCTCTGTGCTATTTTGTCTACTTTCCTGTCAGTAACCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCAACCCTCTGTGCTATTTTGTCTACTTTCCTGTCAGTAACCCT  659

seq1  GACATTATTTGTCATGTTCTGCCAACAGGCTGGCTCTCATGGTCATGCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTTGTCATGTTCTGCCAACAGGCTGGCTCTCATGGTCATGCCC  709

seq1  TCAGGATCCACCTACCCCATGGTACCTTCCTTCTTCCTCCACTTTCCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCCACCTACCCCATGGTACCTTCCTTCTTCCTCCACTTTCCTCT  759

seq1  GTGGTCCCTGCCCTAGACACCAAGCCCAGGCACTGAAGCCCTGCCAACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCTGCCCTAGACACCAAGCCCAGGCACTGAAGCCCTGCCAACCT  809

seq1  CTCTTCTGCCCAGCTACAGGCTGCAGGCCTCTTTAATCAACCAATAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCCCAGCTACAGGCTGCAGGCCTCTTTAATCAACCAATAGTTT  859

seq1  TAAATAAGGAGCTAGGTTTTCACAACAAAAGCTGGCATAATGAAGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGAGCTAGGTTTTCACAACAAAAGCTGGCATAATGAAGAATTC  909

seq1: chr19_6006903_6007788
seq2: B6Ng01-225I01.g_65_951

seq1  GAATTCTTTTCAGTGGGGCAGAGTAGAGCTGGAGTACAGAAAAAAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAGTGGGGCAGAGTAGAGCTGGAGTACAGAAAAAAGTTGA  50

seq1  GGGGAGCTGGGGGTGGGGGCATAGAGAGGCCATTCCACAGTAGTGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTGGGGGTGGGGGCATAGAGAGGCCATTCCACAGTAGTGACAGT  100

seq1  CACCATTTGTGAGAGGGGAAGGTAGGCGGACAGCGGGTCAGTGGGTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTGTGAGAGGGGAAGGTAGGCGGACAGCGGGTCAGTGGGTAAGA  150

seq1  AGGTGCTGGAATGAATGGGCAGGTGTTTGGATAAACAACAAGGCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGGAATGAATGGGCAGGTGTTTGGATAAACAACAAGGCTTTCTT  200

seq1  CCCCGGGCCCCAGACAGTCTAGCAAGCCCCTTTATTACCATCCATAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGCCCCAGACAGTCTAGCAAGCCCCTTTATTACCATCCATAAAGA  250

seq1  TAAGCAGCATTCAATCATGACTATTTGTCTCCCAAGGAACACAACAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCATTCAATCATGACTATTTGTCTCCCAAGGAACACAACAGGCT  300

seq1  CAGCCAGGTGGCCCTGCTCACCCCCCTGCCCTGTCTCCCAACCACTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGTGGCCCTGCTCACCCCCCTGCCCTGTCTCCCAACCACTCACC  350

seq1  TGGGTAGTTCCTGCAGCCTCCAGCGGTGCTTCCCCGACGCCAGGTGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGTTCCTGCAGCCTCCAGCGGTGCTTCCCCGACGCCAGGTGCCCT  400

seq1  CGTAAAATGTGGTATTCCAATTCCGGAGGGTCCTGCTCTTAAGGGCGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAATGTGGTATTCCAATTCCGGAGGGTCCTGCTCTTAAGGGCGTCC  450

seq1  GGTGTAAGGTTGCAGATTTCCAGTTTGGTGAATTCACGGATGAAGTCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGGTTGCAGATTTCCAGTTTGGTGAATTCACGGATGAAGTCTCG  500

seq1  GAACGACATCCTGAGGGCCCAAGGGCAGAGGTGAACCACAGTCCTCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGACATCCTGAGGGCCCAAGGGCAGAGGTGAACCACAGTCCTCCATC  550

seq1  ATGAACTGGGTTTTAGGGGAGCAAGGGGGGAAAATAGTGTTGCTTACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGGGTTTTAGGGGAGCAAGGGGGGAAAATAGTGTTGCTTACCAG  600

seq1  AACTCCCCATCCTCCATCTTGACCCTCAGCTGCTCTCGTTCATAGGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCATCCTCCATCTTGACCCTCAGCTGCTCTCGTTCATAGGGGTC  650

seq1  CACTTTGTTCCACTCATAGGAGCTGTGGGAAGCAGGCACTGCTAGGGTTG  700
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACTTTGTTCCACTCATAGGAGCTGTGGGAAGCA-GCACTGCTAGGGTTG  699

seq1  GACACCACGGACCTATCTAAC-TTCTGTCCCTGGGTCCTGTCCAACCTGG  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACACCACGGACCTATCTAACTTTCTGTCCCTGGGTCCTGTCCAACCTGG  749

seq1  CGTGTTTCAGAGCCCAGATCAGCAGGCTTTCTCTAGGGCCACCTCTTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTCAGAGCCCAGATCAGCAGGCTTTCTCTAGGGCCACCTCTTGAG  799

seq1  GTCCTTAGAGATCCCCATTTAAAGGTCCCTCTTCTTTTTGGGGACAGGG-  848
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  GTCCTTAGAGATCCCCATTTAAGGGTCCCTCTTCTTTTTGGGGACAGGGT  849

seq1  TCTCACTAGCTGGATTTGAACTCATGGAGATACACCTG  886
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTAGCTGGATTTGAACTCATGGAGATACACCTG  887