BAC Information

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BAC

Clone NameB6Ng01-226A21
Chromosome19 (Build37)
Map Location 33,319,082 - 33,439,385
singlet/doubletdoublet
Overlap gene6530404N21Rik
Upstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream geneLOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226A21.bB6Ng01-226A21.g
ACCGA040092GA040093
length5911,169
definitionB6Ng01-226A21.b B6Ng01-226A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,319,082 - 33,319,678)(33,438,193 - 33,439,385)
sequence
tctgacttcttcatgggagaaaaaaggtgaggtaaacaagactgagatca
tggtttctttaatctcctctgagatagttcattcttattcttctgaattt
tgatggaactcttggagagaggactgggagaggaggcaacatttggaatg
taaataaataaaacaattttaaaaagagaaatatacagtatcagtatatc
aaaacaaaacaaaacactaaaacttcaaaatatttaaatatctttagggg
agggggaggaaaaaggggaatatgcttaagcattgggggtaaacaggaga
gaagccatgagggcttgaagaacgaatggaaatatgcaaccttggtgggt
gggatgtgggggtgaccctctagaatataccagagacctgggaggttaaa
gactctcaggactcaaaaggatgaaatgcccaacaatgcagagagggaac
ctgtacagtctatctccactagaaagacagggcatcaagcagagggatgg
agttgtcttcccacagtcaaaaatactgacccagaattgtttctgtctga
aagaactgcagggacaaaaatggagaagagactgagagaaa
gaattccaaaggcacaaacaataaaagcagacacagacaagtgagcttgc
atcagacctagaagcccctgtccaggaaaaggatcgatagtgaacgctgg
tgataataggactttgacagcaagaagctggccttcaagtctgcatttct
agtcactagcaaaatgatagatactacatgcttatgtaatgaatttagtt
ctgtaatctgttgttctttccatgtgtggaatggaaaactctgtgcaagt
tgccatgatgtcatattcctgttgtttcagcatcaaggaagctgtacaag
agggctattagttcaagggtagcctgggctacatatacgtgtatttcttt
aaaagtgaacacaactggttatctaatgatgtttgctgaatgtgagtttt
aaaattgctttagctaacttcttaaatcgccaaatttactaaatggcacc
aactcctcaaatacttgatctcaaatgcttgttctacaattgtagattgg
cctgctcatatcaatatagcaaatagtcacctgctggtatctggaatcat
ccatacagacatgtgactagtaacaaaataaatagagacaaaaccagagg
aaactggttcagggccatgagtgaaattaaaagataattagaaaatgcag
ataatttgacttgctgcctgtagaactgaaatggaagtcacaggaagagt
tcccaacagtgttaaagggccggagtgagggagagtattgagaaatacac
tttagctttgggattcacttttaaaggatcagatttttatttccacattg
ttcacagtagcttattcggaaaacatttctaaaagttatgaagaagttca
gtgcataagctgctcagcaggtggagactgatgtggtattcagcatctgt
gaaaagccttgcatcggaagcatgtggcatattatttagatagagggctg
ttctcaaaacagagcagtgtagacatgcagaccatgagattagatcacag
atgtactacacagcatgtgaacattagtgagtctcagcaagtctctctca
gagcactggttttcaatgcatagagacatgtggtcagtgcagagacattg
tgcctgcattatggctaagatcaagtccgaaatagaattcacctccaata
agccctctctcaattaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_33319082_33319678
seq2: B6Ng01-226A21.b_44_640

seq1  GAATTCTCTGACTTCTTCATGGGAGAAAAAAGGTGAGGTAAACAAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACTTCTTCATGGGAGAAAAAAGGTGAGGTAAACAAGACTG  50

seq1  AGATCATGGTTTCTTTAATCTCCTCTGAGATAGTTCATTCTTATTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGGTTTCTTTAATCTCCTCTGAGATAGTTCATTCTTATTCTTCT  100

seq1  GAATTTTGATGGAACTCTTGGAGAGAGGACTGGGAGAGGAGGCAACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGATGGAACTCTTGGAGAGAGGACTGGGAGAGGAGGCAACATTT  150

seq1  GGAATGTAAATAAATAAAACAATTTTAAAAAGAGAAATATACAGTATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTAAATAAATAAAACAATTTTAAAAAGAGAAATATACAGTATCAG  200

seq1  TATATCAAAACAAAACAAAACACTAAAACTTCAAAATATTTAAATATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAAACAAAACAAAACACTAAAACTTCAAAATATTTAAATATCTT  250

seq1  TAGGGGAGGGGGAGGAAAAAGGGGAATATGCTTAAGCATTGGGGGTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAGGGGGAGGAAAAAGGGGAATATGCTTAAGCATTGGGGGTAAAC  300

seq1  AGGAGAGAAGCCATGAGGGCTTGAAGAACGAATGGAAATATGCAACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAGCCATGAGGGCTTGAAGAACGAATGGAAATATGCAACCTTG  350

seq1  GTGGGTGGGATGTGGGGGTGACCCTCTAGAATATACCAGAGACCTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGGATGTGGGGGTGACCCTCTAGAATATACCAGAGACCTGGGAG  400

seq1  GTTAAAGACTCTCAGGACTCAAAAGGATGAAATGCCCAACAATGCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGACTCTCAGGACTCAAAAGGATGAAATGCCCAACAATGCAGAGA  450

seq1  GGGAACTTGTACAGTCTATCTCCACTAGAAAGACAGGGCATCAAGCAGAG  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTGTACAGTCTATCTCCACTAGAAAGACAGGGCATCAAGCAGAG  500

seq1  GGATGGAGTTGCCATCCCACAGTCAAAAATTCTGACCCAGAATTGTTTCT  550
      ||||||||||| | |||||||||||||||| |||||||||||||||||||
seq2  GGATGGAGTTGTCTTCCCACAGTCAAAAATACTGACCCAGAATTGTTTCT  550

seq1  GTCTAAAAGAACTGCAGGGACAAAAATGGAGAAGAGACTGAGAGAAA  597
      |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAGAACTGCAGGGACAAAAATGGAGAAGAGACTGAGAGAAA  597

seq1: chr19_33438193_33439385
seq2: B6Ng01-226A21.g_63_1231 (reverse)

seq1  AATTAATTGAGA---GGCTTAATTGGAGGGTGATATTTATTTTCTGACTT  47
      ||||||||||||   ||||| |||||| ||||| |||   |||| |||||
seq2  AATTAATTGAGAGAGGGCTT-ATTGGA-GGTGA-ATTCTATTTCGGACTT  47

seq1  AAATACTTTTAG-CATAATGCAGCCACAATG-CTCTTCCAACTGACCACA  95
       |    | |||| |||||||||| ||||||| |||| |  ||||||||||
seq2  GA----TCTTAGCCATAATGCAGGCACAATGTCTCTGC--ACTGACCACA  91

seq1  TTGTCTTCTAATGCATTTGAAAAACCAGTGGCTCTGAGGAGGAGACTTTG  145
       |||| ||| |||||||   ||||||||| ||||||||   ||||| |||
seq2  -TGTC-TCT-ATGCATT--GAAAACCAGT-GCTCTGAG--AGAGAC-TTG  132

seq1  CTGAGACCTCACTAATGTTCACATGGCTGTGGTTAGTTACATCTTGTTGA  195
      |||||| ||||||||||||||||| ||||||  ||| |||||||   |||
seq2  CTGAGA-CTCACTAATGTTCACAT-GCTGTG--TAG-TACATCT--GTGA  175

seq1  TCTAATCTCCATTGGTTCTGCATTGTCTACACTGCTCTGTTTTGAGAACA  245
      |||||||| |||  | |||||| |||||||||||||||||||||||||||
seq2  TCTAATCT-CAT--GGTCTGCA-TGTCTACACTGCTCTGTTTTGAGAACA  221

seq1  GCCCTCTATCTAAATAATATGCCACATGCTTCCGATGCAAGGCTTTTCAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTATCTAAATAATATGCCACATGCTTCCGATGCAAGGCTTTTCAC  271

seq1  AGATGCTGAATACCACATCAGTCTCCACCTGCTGAGCAGCTTATGCACTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGAATACCACATCAGTCTCCACCTGCTGAGCAGCTTATGCACTG  321

seq1  AACTTCTTCATAACTTTTAGAAATGTTTTCCGAATAAGCTACTGTGAACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCATAACTTTTAGAAATGTTTTCCGAATAAGCTACTGTGAACA  371

seq1  ATGTGGAAATAAAAATCTGATCCTTTAAAAGTGAATCCCAAAGCTAAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAATAAAAATCTGATCCTTTAAAAGTGAATCCCAAAGCTAAAGT  421

seq1  GTATTTCTCAATACTCTCCCTCACTCCGGCCCTTTAACACTGTTGGGAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTCAATACTCTCCCTCACTCCGGCCCTTTAACACTGTTGGGAAC  471

seq1  TCTTCCTGTGACTTCCATTTCAGTTCTACAGGCAGCAAGTCAAATTATCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGACTTCCATTTCAGTTCTACAGGCAGCAAGTCAAATTATCT  521

seq1  GCATTTTCTAATTATCTTTTAATTTCACTCATGGCCCTGAACCAGTTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTAATTATCTTTTAATTTCACTCATGGCCCTGAACCAGTTTCC  571

seq1  TCTGGTTTTGTCTCTATTTATTTTGTTACTAGTCACATGTCTGTATGGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTGTCTCTATTTATTTTGTTACTAGTCACATGTCTGTATGGAT  621

seq1  GATTCCAGATACCAGCAGGTGACTATTTGCTATATTGATATGAGCAGGCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGATACCAGCAGGTGACTATTTGCTATATTGATATGAGCAGGCC  671

seq1  AATCTACAATTGTAGAACAAGCATTTGAGATCAAGTATTTGAGGAGTTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAATTGTAGAACAAGCATTTGAGATCAAGTATTTGAGGAGTTGG  721

seq1  TGCCATTTAGTAAATTTGGCGATTTAAGAAGTTAGCTAAAGCAATTTTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTAGTAAATTTGGCGATTTAAGAAGTTAGCTAAAGCAATTTTAA  771

seq1  AACTCACATTCAGCAAACATCATTAGATAACCAGTTGTGTTCACTTTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACATTCAGCAAACATCATTAGATAACCAGTTGTGTTCACTTTTAA  821

seq1  AGAAATACACGTATATGTAGCCCAGGCTACCCTTGAACTAATAGCCCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACACGTATATGTAGCCCAGGCTACCCTTGAACTAATAGCCCTCT  871

seq1  TGTACAGCTTCCTTGATGCTGAAACAACAGGAATATGACATCATGGCAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCTTCCTTGATGCTGAAACAACAGGAATATGACATCATGGCAAC  921

seq1  TTGCACAGAGTTTTCCATTCCACACATGGAAAGAACAACAGATTACAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGAGTTTTCCATTCCACACATGGAAAGAACAACAGATTACAGAA  971

seq1  CTAAATTCATTACATAAGCATGTAGTATCTATCATTTTGCTAGTGACTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCATTACATAAGCATGTAGTATCTATCATTTTGCTAGTGACTAG  1021

seq1  AAATGCAGACTTGAAGGCCAGCTTCTTGCTGTCAAAGTCCTATTATCACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGACTTGAAGGCCAGCTTCTTGCTGTCAAAGTCCTATTATCACC  1071

seq1  AGCGTTCACTATCGATCCTTTTCCTGGACAGGGGCTTCTAGGTCTGATGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTCACTATCGATCCTTTTCCTGGACAGGGGCTTCTAGGTCTGATGC  1121

seq1  AAGCTCACTTGTCTGTGTCTGCTTTTATTGTTTGTGCCTTTGGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACTTGTCTGTGTCTGCTTTTATTGTTTGTGCCTTTGGAATTC  1169