BAC Information

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BAC

Clone NameB6Ng01-226J11
Chromosome19 (Build37)
Map Location 38,417,949 - 38,559,583
singlet/doubletdoublet
Overlap geneTmem20, LOC100042483
Upstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
Downstream genePlce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226J11.bB6Ng01-226J11.g
ACCGA040487GA040488
length1,1531,160
definitionB6Ng01-226J11.b B6Ng01-226J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,558,435 - 38,559,583)(38,417,949 - 38,419,127)
sequence
gaattcatgtgaattcctggagagacttcctattgagtcaggtggatctg
gaccctatgaaaaggtctgaaaagcctggggaccctggtgggacagcaaa
atggtcctgtcatcactaagcttgctttacactaaagctaagccatcccc
tgcaccacaacagttatggatacgcaagtccccatgtgccacaggattca
acacagtccagtggtgtctctggtatccacaatgaatgacctctcttctt
tcagttcccatatagccaaatggctacaattcaagaatggctggcaaaca
gagagaagggtcaaaccacacaattgttttgcatgcctgatggggtggct
tgagtagtcaaagctttgaaacctcaaccactaaacaagttagatatagc
cttatctgaaacttcccaatgaactgagtgaacgctattaagtttgaccc
agttgcatgtatggatcatgagctcaaagtcaggtgcaggatggcacaga
agtcgagggaatagattctggagacagcctgatttgattgagtctggctg
tgactcaaaacacattcatcttctgttacctatattttctcgtcttcaaa
atggacttaataatagaagtctatattcctcagtagaaactgagaaacta
gccaccatgtagaagtcattttgatggtgtccacataaggtggtggttct
caacctccctaatgctgcgtctctttcattcagttactctggttgtgggg
actcccctcaaccataaaattatttttgttgcttcataactataattctg
ctactgttataagaagtaatgtaaatatttttggagacaggggttttcca
aaggagcgtgatctacaggctgagacccactgacgtaggagtgcataaat
ccagtattacatagcttcactgtttcactatttctgaagtaaagatgtat
gaagttgttactagctaaggaaaggagagactattgcaaagtcacatgag
ccagaccaagttttgtcgccaacctaaatgcacggaaggatacaggtaag
ggatgatggcctagcacttattgcctattgtcatacaaatggaaagagct
taacgaatgaagtgcttggcccactgtctagtgtttgttttcatcaacac
aga
gaattcactgcctgatgagcttgctttgcaactcagtctagctgaaacaa
aggatggggctgtgggctctccaacacagtgctgaatattaaaccttgag
ccttgattagaaactttttgtcttggcttcatctttctcttgcaccccgt
cctttttcacttccagcccccttttctggtagacccagttctccatggcc
gctggacgcctacaatggtgtctgttcacagcagtgaaacctaactaaga
caatgcaggccaagaccagcacttcctaggcccctgtccatcttgaaata
gggagactggaaccactttctcactctgcccacaaggttttctttttttt
tttttttaaagatttatttatttatttattatatgtgtgtacactgtagc
tgtcttcagacacttcagaagagggcatcagatttttgttatagatggtt
gtaagccacattgtggttgctgggatttggactctggacctttggaagag
cagtcagtgctcttaaccgctgagccatctcaccagcaccaaggttttct
ttaaatgaaagacctgcccctgcttctctttttgaatttgaccccagatg
gtttctgtagctctggttgctgctcacctgttctcagtacagggcagggc
cacttggctttagggagtgttagagctaagtgtgtccttgctggcctttt
gcagatcatcaggacgggtatctcctggggagctgtttaataacacttct
gatgtacagccagctccccagaacccctgcagtagctacttccgttcttt
ggagcaaatgtcctctggcataactttttgtttaccttttcccattagac
caagattcttaaatctgcaatccatacatgacccacggggataataaaaa
atgcacaaccagaagtacttcccaaacccaggacatcttgggaaccatgc
ccatggctatccactgtaagaagctctgtgctacaacaccacatggtcat
tcataggcagcatcattctgcagaaaaccaagtgctgcttgaaggagagc
agctcagcagcattgcttgaaacacgtgggggcaagtagacggactggac
agtagctctgttcctatctgcactctgactgaattaagctaaggagtagc
taaggtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38558435_38559583
seq2: B6Ng01-226J11.b_45_1197 (reverse)

seq1  TCTGTGTTGATGAAA--CAACACTAGACAGTGTGCCAAGCACTTCATCTG  48
      |||||||||||||||   |||||||||||||| ||||||||||||||  |
seq2  TCTGTGTTGATGAAAACAAACACTAGACAGTGGGCCAAGCACTTCATTCG  50

seq1  TT-AGCTTCTTCCATTTGTATGAC-ATAGGGCATAAGTGCTA-GCCATCA  95
      || ||||  ||||||||||||||| |||||  |||||||||| |||||||
seq2  TTAAGCTCTTTCCATTTGTATGACAATAGGCAATAAGTGCTAGGCCATCA  100

seq1  TCCCTTACCTGTATCCTTCCGTGCATTTAGGTTTGGCGACAAAACTTGGT  145
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCTTACCTGTATCCTTCCGTGCATTTAGG-TTGGCGACAAAACTTGGT  149

seq1  CTGGCCTCATGTGACTTTGCAATAGTCTCTCCTTTCCTTAGCTAGTAACA  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGG-CTCATGTGACTTTGCAATAGTCTCTCCTTTCCTTAGCTAGTAACA  198

seq1  ACTTCATACATCTTTACTTCAGAAATAGTG-AACAGTGGAGCTATGTAAT  244
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  ACTTCATACATCTTTACTTCAGAAATAGTGAAACAGTGAAGCTATGTAAT  248

seq1  ACTGGATTTATGCACTCCTACGTCAGTGGGTCTCAGCCTGTAGATCACGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTTATGCACTCCTACGTCAGTGGGTCTCAGCCTGTAGATCACGC  298

seq1  TCCTTTGGAAAACCCCTGTCTCCAAAAATATTTACATTACTTCTTATAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGAAAACCCCTGTCTCCAAAAATATTTACATTACTTCTTATAAC  348

seq1  AGTAGCAGAATTATAGTTATGAAGCAACAAAAATAATTTTATGGTTGAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAATTATAGTTATGAAGCAACAAAAATAATTTTATGGTTGAGG  398

seq1  GGAGTCCCCACAACCAGAGTAACTGAATGAAAGAGACGCAGCATTAGGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCCACAACCAGAGTAACTGAATGAAAGAGACGCAGCATTAGGGA  448

seq1  GGTTGAGAACCACCACCTTATGTGGACACCATCAAAATGACTTCTACATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAACCACCACCTTATGTGGACACCATCAAAATGACTTCTACATG  498

seq1  GTGGCTAGTTTCTCAGTTTCTACTGAGGAATATAGACTTCTATTATTAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGTTTCTCAGTTTCTACTGAGGAATATAGACTTCTATTATTAAG  548

seq1  TCCATTTTGAAGACGAGAAAATATAGGTAACAGAAGATGAATGTGTTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGAAGACGAGAAAATATAGGTAACAGAAGATGAATGTGTTTTG  598

seq1  AGTCACAGCCAGACTCAATCAAATCAGGCTGTCTCCAGAATCTATTCCCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCCAGACTCAATCAAATCAGGCTGTCTCCAGAATCTATTCCCT  648

seq1  CGACTTCTGTGCCATCCTGCACCTGACTTTGAGCTCATGATCCATACATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTCTGTGCCATCCTGCACCTGACTTTGAGCTCATGATCCATACATG  698

seq1  CAACTGGGTCAAACTTAATAGCGTTCACTCAGTTCATTGGGAAGTTTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGTCAAACTTAATAGCGTTCACTCAGTTCATTGGGAAGTTTCAG  748

seq1  ATAAGGCTATATCTAACTTGTTTAGTGGTTGAGGTTTCAAAGCTTTGACT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTATATCTAACTTGTTTAGTGGTTGAGGTTTCAAAGCTTTGACT  798

seq1  ACTCAAGCCACCCCATCAGGCATGCAAAACAATTGTGTGGTTTGACCCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCCACCCCATCAGGCATGCAAAACAATTGTGTGGTTTGACCCTT  848

seq1  CTCTCTGTTTGCCAGCCATTCTTGAATTGTAGCCATTTGGCTATATGGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTTGCCAGCCATTCTTGAATTGTAGCCATTTGGCTATATGGGA  898

seq1  ACTGAAAGAAGAGAGGTCATTCATTGTGGATACCAGAGACACCACTGGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGAAGAGAGGTCATTCATTGTGGATACCAGAGACACCACTGGAC  948

seq1  TGTGTTGAATCCTGTGGCACATGGGGACTTGCGTATCCATAACTGTTGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAATCCTGTGGCACATGGGGACTTGCGTATCCATAACTGTTGTG  998

seq1  GTGCAGGGGATGGCTTAGCTTTAGTGTAAAGCAAGCTTAGTGATGACAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGGATGGCTTAGCTTTAGTGTAAAGCAAGCTTAGTGATGACAGG  1048

seq1  ACCATTTTGCTGTCCCACCAGGGTCCCCAGGCTTTTCAGACCTTTTCATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTGCTGTCCCACCAGGGTCCCCAGGCTTTTCAGACCTTTTCATA  1098

seq1  GGGTCCAGATCCACCTGACTCAATAGGAAGTCTCTCCAGGAATTCACATG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGATCCACCTGACTCAATAGGAAGTCTCTCCAGGAATTCACATG  1148

seq1  AATTC  1149
      |||||
seq2  AATTC  1153

seq1: chr19_38417949_38419127
seq2: B6Ng01-226J11.g_65_1224

seq1  GAATTCACTGCCTGATGAGCTTGCTTTGCAACTCAGTCTAGCTGAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCTGATGAGCTTGCTTTGCAACTCAGTCTAGCTGAAACAA  50

seq1  AGGATGGGGCTGTGGGCTCTCCAACACAGTGCTGAATATTAAACCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGGCTGTGGGCTCTCCAACACAGTGCTGAATATTAAACCTTGAG  100

seq1  CCTTGATTAGAAACTTTTTGTCTTGGCTTCATCTTTCTCTTGCACCCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTAGAAACTTTTTGTCTTGGCTTCATCTTTCTCTTGCACCCCGT  150

seq1  CCTTTTTCACTTCCAGCCCCCTTTTCTGGTAGACCCAGTTCTCCATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCACTTCCAGCCCCCTTTTCTGGTAGACCCAGTTCTCCATGGCC  200

seq1  GCTGGACGCCTACAATGGTGTCTGTTCACAGCAGTGAAACCTAACTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACGCCTACAATGGTGTCTGTTCACAGCAGTGAAACCTAACTAAGA  250

seq1  CAATGCAGGCCAAGACCAGCACTTCCTAGGCCCCTGTCCATCTTGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGGCCAAGACCAGCACTTCCTAGGCCCCTGTCCATCTTGAAATA  300

seq1  GGGAGACTGGAACCACTTTCTCACTCTGCCCACAAGGTTTTCTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTGGAACCACTTTCTCACTCTGCCCACAAGGTTTTCTTTTTTTT  350

seq1  TTTTTTTAAAGATTTATTTATTTATTTATTATATGTGTGTACACTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAGATTTATTTATTTATTTATTATATGTGTGTACACTGTAGC  400

seq1  TGTCTTCAGACACTTCAGAAGAGGGCATCAGATTTTTGTTATAGATGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACTTCAGAAGAGGGCATCAGATTTTTGTTATAGATGGTT  450

seq1  GTAAGCCACATTGTGGTTGCTGGGATTTGGACTCTGGACCTTTGGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCACATTGTGGTTGCTGGGATTTGGACTCTGGACCTTTGGAAGAG  500

seq1  CAGTCAGTGCTCTTAACCGCTGAGCCATCTCACCAGCACCAAGGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCTCTTAACCGCTGAGCCATCTCACCAGCACCAAGGTTTTCT  550

seq1  TTAAATGAAAGACCTGCCCCTGCTTCTCTTTTTGAATTTGACCCCAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAAAGACCTGCCCCTGCTTCTCTTTTTGAATTTGACCCCAGATG  600

seq1  GTTTCTGTAGCTCTGGTTGCTGCTCACCTGTTCTCAGTACAGGGCAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTAGCTCTGGTTGCTGCTCACCTGTTCTCAGTACAGGGCAGGGC  650

seq1  CACTTGGCTTTAGGGAGTGTTAGAGCTAAGTGTGTCCTTGCTGGCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCTTTAGGGAGTGTTAGAGCTAAGTGTGTCCTTGCTGGCCTTTT  700

seq1  GCAGATCATCAGGACGGGTATCTCCTGGGGAGCTGTTTAATAACACTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCATCAGGACGGGTATCTCCTGGGGAGCTGTTTAATAACACTTCT  750

seq1  GATGTACAGCCAGCTCCCCAGAACCCCTGCAGTAGCTACTTCCGTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACAGCCAGCTCCCCAGAACCCCTGCAGTAGCTACTTCCGTTCTTT  800

seq1  GGAGCAAATGTCCTCTGGCATAACTTTTTGTTTACC-TTTCCCATTAGAC  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAGCAAATGTCCTCTGGCATAACTTTTTGTTTACCTTTTCCCATTAGAC  850

seq1  CAAGATTCTT-AATCTGCAATCCATACATGACCCACGGGGATAATAAAAA  898
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTCTTAAATCTGCAATCCATACATGACCCACGGGGATAATAAAAA  900

seq1  ATGCACAACCAGAAAGTACTTCCCAAACCCAGGAACATCTTGGGAACCAT  948
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ATGCACAACCAG-AAGTACTTCCCAAACCCAGG-ACATCTTGGGAACCAT  948

seq1  GCCCATGGCTTATCCACTGTAGGAAGCTCTGTGCTAACAACA-CACATGG  997
      ||||||||| ||||||||||| ||||||||||||| |||||| |||||||
seq2  GCCCATGGC-TATCCACTGTAAGAAGCTCTGTGCT-ACAACACCACATGG  996

seq1  TCATTCAATAAGGCAGCATCATTCTGCAGAAAACCAAGTGCTGC-TGGAG  1046
      |||||||   |||||||||||||||||||||||||||||||||| || ||
seq2  TCATTCA--TAGGCAGCATCATTCTGCAGAAAACCAAGTGCTGCTTGAAG  1044

seq1  GAGAGCAGCTCAGCAGGCATTGC-TGAGACACGGTGGGGGGAAAAGTAAG  1095
      ||||||||||||||| ||||||| ||| |||| |||||||   |||||  
seq2  GAGAGCAGCTCAGCA-GCATTGCTTGAAACAC-GTGGGGG--CAAGTA--  1088

seq1  AACGAGCTGGACAAAGTAGCTCCTGTCCCTAATCCTGGCACTCCTGAAGC  1145
       |||  ||||||  ||||||| |||| ||| |||   ||||| ||||  |
seq2  GACGGACTGGAC--AGTAGCT-CTGTTCCT-ATC--TGCACT-CTGA--C  1129

seq1  TGAGTAAAAGTTAAAAGGAGTAGCTTAGGTTTAA  1179
      ||| | ||  |   ||||||||||| ||||||||
seq2  TGAATTAAGCT---AAGGAGTAGCTAAGGTTTAA  1160