BAC Information

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BAC

Clone NameB6Ng01-230I14
Chromosome19 (Build37)
Map Location 58,872,051 - 59,028,277
singlet/doubletdoublet
Overlap geneHspa12a, 6430537H07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream gene4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230I14.bB6Ng01-230I14.g
ACCGA043377GA043378
length1,029987
definitionB6Ng01-230I14.b B6Ng01-230I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,872,051 - 58,873,070)(59,027,291 - 59,028,277)
sequence
gaattccagcagataagaaagagagttctgaagagataagaaggactatg
agtcagattcttgattctttaccctcatttggctcttgaatgttgaatgt
tggcaagtctagccttgcacaggaggaggaacacagaacctggccttggg
aggcttctttttcgtggttcctctcctgctgtcttttttccttctctgat
ccttcctgtgggggttaaaagggcaacagcctccgagggcaggtggacct
ccaaccctcttacctagagagcagagtgtaagtacaggcactcttccctg
agggaaatctgacagggattgttaaggccacacactgtggtctgtggtca
cttcagcttggagggaattctcacattccaacactacgactgcagaccca
gagtctggaagggattaggttcaggaccctgctcctgacaagcaccagcg
attctgaggctggagagccacaggcctgccttcacgggtctaggtttacg
tactgcttttaggtgaatgtgaaaagctgcaggtttgatggagacatttc
atggaatagaacctcctttaatatttccttatggtgggattaagaagagg
gggaaggaaagggttaactgaaaatgtgcatggttggcaaggctgttttg
aatttttagatataaacagagtaaactgaaactctattttctccaattaa
atttctgctaaggtcacctagaatcatgcatgatctctgaactcacgctt
cattgttctgagaatcactttctgatctgggttttcatttactgggtttt
caattaactggggtccaaaaatgcacagcggtgttgtgtagtaatcagat
atactgagatagaccaaattcgtatacatttttatcaaagtgttttcatc
actgtcctaaatttgtcattagtcactactgctaatctcttactactttt
aattaaatgaactttgtcctaaggtatggtattatgtagaaaaaacctaa
gcggatagaataaggttgggaaactatct
gaattcaagaggccggaaggggctgctctctcaaatcctgacttagggtg
cggcaccccaacatacagcttgctttaactggacagtccgtttgatctct
ccctccaggtgattctcaggtttaacagatatgcaaacagagctttacct
ccatcaaagcagactctttactgtgggggctttttttttttttttttttt
tgattgcttcatggaaactttcaaggaggtggcaaattcctgccctccac
gctgccacctcctttctaaccatctcccactgccactgtttaggaagctt
tattcagcaagtgctcagctatgaataagagcacaatcgttttgcatctc
aaataaaaatggaggtaggagtgggataaaaccttgtcacccagcacagc
agcaagggaggtgaatgggacctggcggggcactgtccacgccttcctcc
tcacactgttaaaaccaaaggtgccaggagatgccaagccactcacctgc
cttctgccctttctttttggagggaggtgggggaggcggcggcggcggcg
gcggcagcgttactggtggaggtgcgggaaccagctcctcctggctcttt
tccaattcttttctctctttatcttcttgtactttatgttcaaagaaggt
cctgaatggcaacaaatataagtctttacaatgggatgtcacgtttttac
cgctgaccctgaggtaatgttgcaataatatgattttttttttttttttt
ttgctaatgaggagcaaattaagtttaatttccaaagttaataaaattaa
tgatggcgtcgaagcattttttctttgttccagaatcaaaaatcattttt
gcctggaaagccatgttctctaaagtgttcatcaactgaaatgattgaaa
cttctttttataactttcaaaataaacttgagatgcaatttgactaaagt
gactgcgtttttcttttataaatgaacattcagaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58872051_58873070
seq2: B6Ng01-230I14.b_48_1076

seq1  GAATTCCAGCAGATAAGAAAGAGAGTTCTGAAGAGATAAGAAGGACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGATAAGAAAGAGAGTTCTGAAGAGATAAGAAGGACTATG  50

seq1  AGTCAGATTCTTGATTCTTTACCCTCATTTGGCTCTTGAATGTTGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTCTTGATTCTTTACCCTCATTTGGCTCTTGAATGTTGAATGT  100

seq1  TGGCAAGTCTAGCCTTGCACAGGAGGAGGAACACAGAACCTGGCCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTCTAGCCTTGCACAGGAGGAGGAACACAGAACCTGGCCTTGGG  150

seq1  AGGCTTCTTTTTCGTGGTTCCTCTCCTGCTGTCTTTTTTCCTTCTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTTTTCGTGGTTCCTCTCCTGCTGTCTTTTTTCCTTCTCTGAT  200

seq1  CCTTCCTGTGGGGGTTAAAAGGGCAACAGCCTCCGAGGGCAGGTGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTGGGGGTTAAAAGGGCAACAGCCTCCGAGGGCAGGTGGACCT  250

seq1  CCAACCCTCTTACCTAGAGAGCAGAGTGTAAGTACAGGCACTCTTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTCTTACCTAGAGAGCAGAGTGTAAGTACAGGCACTCTTCCCTG  300

seq1  AGGGAAATCTGACAGGGATTGTTAAGGCCACACACTGTGGTCTGTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATCTGACAGGGATTGTTAAGGCCACACACTGTGGTCTGTGGTCA  350

seq1  CTTCAGCTTGGAGGGAATTCTCACATTCCAACACTACGACTGCAGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTGGAGGGAATTCTCACATTCCAACACTACGACTGCAGACCCA  400

seq1  GAGTCTGGAAGGGATTAGGTTCAGGACCCTGCTCCTGACAAGCACCAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGAAGGGATTAGGTTCAGGACCCTGCTCCTGACAAGCACCAGCG  450

seq1  ATTCTGAGGCTGGAGAGCCACAGGCCTGCCTTCACGGGTCTAGGTTTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGCTGGAGAGCCACAGGCCTGCCTTCACGGGTCTAGGTTTACG  500

seq1  TACTGCTTTTAGGTGAATGTGAAAAGCTGCAGGTTTGATGGAGACATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTTAGGTGAATGTGAAAAGCTGCAGGTTTGATGGAGACATTTC  550

seq1  ATGGAATAGAACCTCCTTTAATATTTCCTTATGGTGGGATTAAGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAGAACCTCCTTTAATATTTCCTTATGGTGGGATTAAGAAGAGG  600

seq1  GGGAAGGAAAGGGTTAACTGAAAATGTGCATGGTTGGCAAGGCTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAAGGGTTAACTGAAAATGTGCATGGTTGGCAAGGCTGTTTTG  650

seq1  AATTTTTAGATATAAACAGAGTAAACTGAAACTCTATTTTCTCCAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGATATAAACAGAGTAAACTGAAACTCTATTTTCTCCAATTAA  700

seq1  ATTTCTGCTAAGGTCACCTAGAATCATGCATGATCTCTGAACTCACGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTAAGGTCACCTAGAATCATGCATGATCTCTGAACTCACGCTT  750

seq1  CATTGTTCTGAGAATCACTTTCTGATCTGGGTTTTCATTTACTGGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTGAGAATCACTTTCTGATCTGGGTTTTCATTTACTGGGTTTT  800

seq1  CAATTAACTGGGGTCCAAAAATGCACAGCGGTGTTGTGTAGTAATCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACTGGGGTCCAAAAATGCACAGCGGTGTTGTGTAGTAATCAGAT  850

seq1  ATACTGAGATAGACCAAATTCGTATACA-TTTTATCAAAGTGTTTTCATC  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATACTGAGATAGACCAAATTCGTATACATTTTTATCAAAGTGTTTTCATC  900

seq1  ACTGTCCT-AATTTGTCATTAGTCACTACTGCTAATCTCTTACTACTTT-  947
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGTCCTAAATTTGTCATTAGTCACTACTGCTAATCTCTTACTACTTTT  950

seq1  -ATTAAATTGAACTTTGTCCT-AGGTAT-GTA-TATGTAGAAAAAACAT-  992
       |||||| ||||||||||||| |||||| ||| |||||||||||||| | 
seq2  AATTAAA-TGAACTTTGTCCTAAGGTATGGTATTATGTAGAAAAAACCTA  999

seq1  AGTGTATAG-ATAAGGTTTGG-AACTATCT  1020
      || | |||| |||||||| || ||||||||
seq2  AGCGGATAGAATAAGGTTGGGAAACTATCT  1029

seq1: chr19_59027291_59028277
seq2: B6Ng01-230I14.g_69_1055 (reverse)

seq1  GCTTCTGAATG-TCATTTATATAAAAAGAAAAACGCAGTCACCCTTAGTC  49
      ||||||||||| ||||||||   |||||||||||||||||| | ||||||
seq2  GCTTCTGAATGTTCATTTAT---AAAAGAAAAACGCAGTCA-CTTTAGTC  46

seq1  AAATTGCATCTTCAAGTTTTATTTTGAAAG-TATAAAAAG-AGTTTCAAT  97
      |||||||||| ||||| ||||||||||||| ||||||||| |||||||||
seq2  AAATTGCATC-TCAAG-TTTATTTTGAAAGTTATAAAAAGAAGTTTCAAT  94

seq1  CATTTCAG-TGATGAACACCTTAGAGAACATGGCTTTCCAGGC-AAAATG  145
      |||||||| |||||||||| ||||||||||||||||||||||| ||||||
seq2  CATTTCAGTTGATGAACACTTTAGAGAACATGGCTTTCCAGGCAAAAATG  144

seq1  AATTTTGATTCTTGAAC-AAGAAAAATGGCTTCGACGCCATCATTAATTT  194
      | |||||||||| |||| ||||||||  ||||||||||||||||||||||
seq2  ATTTTTGATTCTGGAACAAAGAAAAAATGCTTCGACGCCATCATTAATTT  194

seq1  TATTAACCTTGGAAATTAAACCTAATTTGCTCCTCATTAGCAAAAAAAAA  244
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TATTAACTTTGGAAATTAAACTTAATTTGCTCCTCATTAGCAAAAAAAAA  244

seq1  AAAAAAAAAATCATATTATTGCAACATTACCTCAGGGTCAGCGGTAAAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCATATTATTGCAACATTACCTCAGGGTCAGCGGTAAAAA  294

seq1  CGTGACATCCCATTGTAAAGACTTATATTTGTTGCCATTCAGGACCTTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACATCCCATTGTAAAGACTTATATTTGTTGCCATTCAGGACCTTCT  344

seq1  TTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATAAAGTACAAGAAGATAAAGAGAGAAAAGAATTGGAAAAGAGC  394

seq1  CAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGCTGGTTCCCGCACCTCCACCAGTAACGCTGCCGCCGCCGCC  444

seq1  GCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGCCTCCCCCACCTCCCTCCAAAAAGAAAGGGCAGAAGGCAGGTG  494

seq1  AGTGGCTTGGCATCTCCTGGCACCTTTGGTTTTAACAGTGTGAGGAGGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGGCATCTCCTGGCACCTTTGGTTTTAACAGTGTGAGGAGGAA  544

seq1  GGCGTGGACAGTGCCCCGCCAGGTCCCATTCACCTCCCTTGCTGCTGTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGACAGTGCCCCGCCAGGTCCCATTCACCTCCCTTGCTGCTGTGC  594

seq1  TGGGTGACAAGGTTTTATCCCACTCCTACCTCCATTTTTATTTGAGATGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACAAGGTTTTATCCCACTCCTACCTCCATTTTTATTTGAGATGC  644

seq1  AAAACGATTGTGCTCTTATTCATAGCTGAGCACTTGCTGAATAAAGCTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGATTGTGCTCTTATTCATAGCTGAGCACTTGCTGAATAAAGCTTC  694

seq1  CTAAACAGTGGCAGTGGGAGATGGTTAGAAAGGAGGTGGCAGCGTGGAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGTGGCAGTGGGAGATGGTTAGAAAGGAGGTGGCAGCGTGGAGG  744

seq1  GCAGGAATTTGCCACCTCCTTGAAAGTTTCCATGAAGCAATCAAAAAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATTTGCCACCTCCTTGAAAGTTTCCATGAAGCAATCAAAAAAAA  794

seq1  AAAAAAAAAAAAAGCCCCCACAGTAAAGAGTCTGCTTTGATGGAGGTAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGCCCCCACAGTAAAGAGTCTGCTTTGATGGAGGTAAA  844

seq1  GCTCTGTTTGCATATCTGTTAAACCTGAGAATCACCTGGAGGGAGAGATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTTGCATATCTGTTAAACCTGAGAATCACCTGGAGGGAGAGATC  894

seq1  AAACGGACTGTCCAGTTAAAGCAAGCTGTATGTTGGGGTGCCGCACCCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGACTGTCCAGTTAAAGCAAGCTGTATGTTGGGGTGCCGCACCCTA  944

seq1  AGTCAGGATTTGAGAGAGCAGCCCCTTCCGGCCTCTTGAATTC  987
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGATTTGAGAGAGCAGCCCCTTCCGGCCTCTTGAATTC  987