BAC Information

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BAC

Clone NameB6Ng01-234C21
Chromosome19 (Build37)
Map Location 44,271,987 - 44,392,491
singlet/doubletdoublet
Overlap geneScd3, LOC629152, Scd2
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1
Downstream geneScd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234C21.bB6Ng01-234C21.g
ACCGA046016GA046017
length9071,064
definitionB6Ng01-234C21.b B6Ng01-234C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,391,947 - 44,392,491)(44,271,987 - 44,273,064)
sequence
gaattcaaattcccagccaccacatgatggctcacaaccatcagcacagc
tacagtgtactcatatacataaaataaataaatctttttttaaaagtgtg
cttgctgtcttctttaagaatcaatgggctaaggttgtaaaaatgctgat
ttatgagacaatcaaaagggaacctgggcaaatgattcaattgatatata
aataacagaccaggctttggcctgcaagagagaactactcagagagaaca
gcccttttagaatttttctaacaggaactgagctgtctggagatctctag
agagctgtctccagcagaacacaggcctatcagcttgtaccccatgatca
acttcaagtgatttctcttgccacccccaaacacactttcctcagaaccc
ctctccaagcctaggctgatctttggcaatagatgctattccaaagaagg
gggaggggggtgcttcagacatccaggaagagccgggagtggtggtgcac
gcctttaatcccagcactcaggaagcagaggcaggcagatttctgaattc
gaggccagcttggtctacaaagtgagctccaggacagccagggctataca
aagaaaccctgtctcgaaaaaaaaaaaaaaaaaaaccaaaaccagacatc
caggaaggatatcagagaagaaaagggagcgcaccagcgagtcagacaca
cctcaagtgcacaggttccccagcagtgggctgaaaaacggaagtagcct
tcaaaaggtaaaccagatggccctgacaaggagaggccggcagttctacc
cccaagacaaacccacagctctctcaggcctccaatccagctgtggactc
ctctctcagtcaggtaaagagtaatcccattctctcctcttcccctccct
ctccctc
gaattcccaatgctgggaatttatctgatatttgcaaacagctaacgtgt
agccagccatgcgcagactctagacctcccagcccagagcacacaagaag
aaatttttaaatgctgctctgttacctcaccgtaagcctgttccctagtc
ctgtctgattctcggagttgctgtactgagatggcccctctcccacttcc
ccatttaatacactatggttgtgttctgtgccattgcatgctggcatgta
cagtttgcttgggggttttgtccactttgtcttagaaatgtgtgtgctca
ggctgggtgtggtgccacgtgcctgcaatatcagcacttaagaagtggaa
acaggagaattgggagttcaagaccagcctcgggtacatagagagttcaa
atccagtctgggatacatgagaccctgtccaccaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaagccagacatggtagacccatggtaatcccattagg
aggcagaggcatgcagatctctgagttcaaggacagcctggtctacaaag
tgagttccagacagccagaacaccctgcctcaaaaaacaaagaaagcaaa
gaagcaataaaaatctgtgagctcccaggggtggcagtgaacttgactta
gttgcctcacatgaagaagagccttggctttctgctgagcacatgggatt
ccaatccacagggcaggcagctacccgggtgtaggagtgtgggatggaga
agcagaaactcccagttctagttctgaaagatagtcatggataagtccct
gttcccctgagaggacaccctagcttccaagaggtgaccgtttctacttg
ggggtagtctcggcatgggggtgatctagacacatctctgctgttcctga
gatccaagatggctgtagtttaggacaccagctggagtctttgcaggatt
ctggggagatgtgactatggtgtgcctttggtctctacgcctgtgctttg
ctgtatgctgcgtacagagactcgtgagactaacataacctcgtgcaggt
gtctgactcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44391947_44392491
seq2: B6Ng01-234C21.b_410_953 (reverse)

seq1  GAGGGAGAGGGAGGGGAAGAGGGAGAGAATGGGATTACTCTTTACCTGAC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGGAGAGGGAGGGGAAGA-GGAGAGAATGGGATTACTCTTTACCTGAC  49

seq1  TGAGAGAGGAGTCCACAGCTGGATTGGAGGCCTGAGAGAGCTGTGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGGAGTCCACAGCTGGATTGGAGGCCTGAGAGAGCTGTGGGTTT  99

seq1  GTCTTGGGGGTAGAACTGCCGGCCTCTCCTTGTCAGGGCCATCTGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGGGGTAGAACTGCCGGCCTCTCCTTGTCAGGGCCATCTGGTTTA  149

seq1  CCTTTTGAAGGCTACTTCCGTTTTTCAGCCCACTGCTGGGGAACCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGAAGGCTACTTCCGTTTTTCAGCCCACTGCTGGGGAACCTGTGC  199

seq1  ACTTGAGGTGTGTCTGACTCGCTGGTGCGCTCCCTTTTCTTCTCTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGTGTGTCTGACTCGCTGGTGCGCTCCCTTTTCTTCTCTGATAT  249

seq1  CCTTCCTGGATGTCTGGTTTTGGTTTTTTTTTTTTTTTTTTTCGAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGATGTCTGGTTTTGGTTTTTTTTTTTTTTTTTTTCGAGACAG  299

seq1  GGTTTCTTTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAAG  349

seq1  CTGGCCTCGAATTCAGAAATCTGCCTGCCTCTGCTTCCTGAGTGCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGAATTCAGAAATCTGCCTGCCTCTGCTTCCTGAGTGCTGGGA  399

seq1  TTAAAGGCGTGCACCACCACTCCCGGCTCTTCCTGGATGTCTGAAGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCACCACCACTCCCGGCTCTTCCTGGATGTCTGAAGCACC  449

seq1  CCCCTCCCCCTTCTTTGGAATAGCATCTATTGCCAAAGATCAGCCTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCTTCTTTGGAATAGCATCTATTGCCAAAGATCAGCCTAGGC  499

seq1  TTGGAGAGGGGTTCTGAGGAAAGTGTGTTTGGGGGTGGCAAGAGA  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGGGTTCTGAGGAAAGTGTGTTTGGGGGTGGCAAGAGA  544

seq1: chr19_44271987_44273064
seq2: B6Ng01-234C21.g_65_1128

seq1  GAATTCCCAATGCTGGGAATTTATCTGATATTTGCAAACAGCTAACGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATGCTGGGAATTTATCTGATATTTGCAAACAGCTAACGTGT  50

seq1  AGCCAGCCATGCGCAGACTCTAGACCTCCCAGCCCAGAGCACACAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCATGCGCAGACTCTAGACCTCCCAGCCCAGAGCACACAAGAAG  100

seq1  AAATTTTTAAATGCTGCTCTGTTACCTCACCGTAAGCCTGTTCCCTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAATGCTGCTCTGTTACCTCACCGTAAGCCTGTTCCCTAGTC  150

seq1  CTGTCTGATTCTCGGAGTTGCTGTACTGAGATGGCCCCTCTCCCACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATTCTCGGAGTTGCTGTACTGAGATGGCCCCTCTCCCACTTCC  200

seq1  CCATTTAATACACTATGGTTGTGTTCTGTGCCATTGCATGCTGGCATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAATACACTATGGTTGTGTTCTGTGCCATTGCATGCTGGCATGTA  250

seq1  CAGTTTGCTTGGGGGTTTTGTCCACTTTGTCTTAGAAATGTGTGTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCTTGGGGGTTTTGTCCACTTTGTCTTAGAAATGTGTGTGCTCA  300

seq1  GGCTGGGTGTGGTGCCACGTGCCTGCAATATCAGCACTTAAGAAGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTGTGGTGCCACGTGCCTGCAATATCAGCACTTAAGAAGTGGAA  350

seq1  ACAGGAGAATTGGGAGTTCAAGACCAGCCTCGGGTACATAGAGAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAATTGGGAGTTCAAGACCAGCCTCGGGTACATAGAGAGTTCAA  400

seq1  ATCCAGTCTGGGATACATGAGACCCTGTCCACCAAAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCTGGGATACATGAGACCCTGTCCACCAAAAAAAAAAAAAAAAA  450

seq1  AAAAAAAAAAAAAAAGCCAGACATGGTAGACCCATGGTAATCCCATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGCCAGACATGGTAGACCCATGGTAATCCCATTAGG  500

seq1  AGGCAGAGGCATGCAGATCTCTGAGTTCAAGGACAGCCTGGTCTACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCATGCAGATCTCTGAGTTCAAGGACAGCCTGGTCTACAAAG  550

seq1  TGAGTTCCAGACAGCCAGAACACCCTGCCTCAAAAAACAAAGAAAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGACAGCCAGAACACCCTGCCTCAAAAAACAAAGAAAGCAAA  600

seq1  GAAGCAATAAAAATCTGTGAGCTCCCAGGGGTGGCAGTGAACTTGACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATAAAAATCTGTGAGCTCCCAGGGGTGGCAGTGAACTTGACTTA  650

seq1  GTTGCCTCACATGAAGAAGAGCCTTGGCTTTCTGCTGAGCACATGGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCACATGAAGAAGAGCCTTGGCTTTCTGCTGAGCACATGGGATT  700

seq1  CCAATCCACAGGGCAGGCAGCTACCCGGGTGTAGGAGTGTGGGATGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCACAGGGCAGGCAGCTACCCGGGTGTAGGAGTGTGGGATGGAGA  750

seq1  AGCAGAAACTCCCAGTTCTAGTTCTGAAAGATAGTCATGGATAAGTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAACTCCCAGTTCTAGTTCTGAAAGATAGTCATGGATAAGTCCCT  800

seq1  GTTCCCCTGAGAGGACACCCTAGCTTCCAAGAGGTGACCGTTTCTACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTGAGAGGACACCCTAGCTTCCAAGAGGTGACCGTTTCTACTTG  850

seq1  GGGGTAGTCTCGGCAT-GGGGTGATCTAGACACATCTCTGCTGTTCCTGA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGGTAGTCTCGGCATGGGGGTGATCTAGACACATCTCTGCTGTTCCTGA  900

seq1  GATCCAAGATGGCTGTAGGTTTAGGACACCAGCTGGAGCCTTTGCAGGGA  949
      ||||||||||||||||| |||||||||||||||||||| |||||||||  
seq2  GATCCAAGATGGCTGTA-GTTTAGGACACCAGCTGGAGTCTTTGCAGGAT  949

seq1  TCTGGGGAAGGAATGTGACTATGGTGTGCCTTTGGTTCTCTTACGCCTGT  999
      ||||||||    ||||||||||||||||||||||| |||| |||||||||
seq2  TCTGGGGA---GATGTGACTATGGTGTGCCTTTGG-TCTC-TACGCCTGT  994

seq1  GCCTTTGGCCTTGTTATGGCTGCGTTACAGAGACTCCGTGAAGGACTAAC  1049
      | |||||  ||   ||| |||||| |||||||||| |||||  |||||||
seq2  G-CTTTG--CT--GTAT-GCTGCG-TACAGAGACT-CGTGA--GACTAAC  1034

seq1  ATAA-CTCGTGCAGGTGTCTGACTCAGATG  1078
      |||| |||||||||||||||||||||||||
seq2  ATAACCTCGTGCAGGTGTCTGACTCAGATG  1064