BAC Information

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BAC

Clone NameB6Ng01-234P13
Chromosome19 (Build37)
Map Location 22,807,889 - 22,928,180
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneTmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234P13.bB6Ng01-234P13.g
ACCGA046572GA046573
length1,0621,104
definitionB6Ng01-234P13.b B6Ng01-234P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,927,112 - 22,928,180)(22,807,889 - 22,809,016)
sequence
gaattcttagatttatccccaaatatgatgtaaagcacagatctctctct
ctctctctctctctctcacacacacacacacacacacacacgttttgtgt
tacatatactttaaaatagttttcaaaaaatacatgtcatacttttaaat
tagatttttgggatagtattttaattataatttctcccttccctttcttc
cctccagcgctccctctccctgatgccattacctgttctcctttaaatta
ctggcctcttttttcactaactgttattgcacatatgtaaatgtatattc
ataaatattcctaaatattgtctcctagtaatatcaaaagctacactcat
aaagtctcaccaatatgactaaaagtagcccaaacattacctaaaagcag
ttattttaaggtttctgatcttagctgttatatgctttgattaggcaatc
ctgtctggtttctgtgcttggagtttacaaaaatatgtccctgttacgga
acatgacactttagttaggattatttttatctgaatgtgttttgtagcta
atcctccttcatgcatctcaactgtggcttgattgattgtcttccctaac
ttcttaggttgaaacctaaggccagtgtgatgggtcatggaatatggggc
agttcttagtgtgttaggtcttgattaatggttgctataaattaatatca
ttataagagagctcatacagatatggtcaccagttggtgccagtgtttgg
gaagtggtgcagcatttgtcagaggaaatacgttacttcgggtgggtgta
ctccctctgttttctgtctgctgtttaagataagaactctcagcttccta
ctcctgtagccctggttccctgctatgatggaatcttatccctctgtaac
cataagctgaaataactcttccatgtataagttaaaaaaaagagagagag
agagagagctcattcagactctcattcctcctactagtgagacacagcca
gaggtaccacttagaagcctggaactgacctctatacgttgtcaccttga
atttgggcttct
gaattcatccccagctggggtttaggaatgcagataagctttctctgaaa
cttttcctacttccttccacagtaccccagagaagaaaggcaccccagag
aaatggctgctatttagtaagccttttttttttttttttttgtgcttgtg
actaaaaaaaggcaaaacaaatcaggctttgatcttagcacagaggggtc
tcaaaggagttgaatgttttttaaactaaagcatactgggcaggcatctt
ctccaactcgaccactgctttacatttatatctgtatgtatttgtcatct
cccgctgtgcatgcatttttgatatgagtatgcatgtgtgctgtgtgcta
tatatctgatggctataaaattcctctgaaggacttgtgagctctgtact
gaagttgtcacataaacatttggctatgaaaagaaagaatgctcccctga
taatctactaagggtcctctcagaaaaaaaaaaaaattttcctttccaca
aagggctttgtgaggcttcagtgacttaccagtttagattgtaaacacag
tcacacacacacacacacacaaacatatttgtgtatatatacatataggt
gtttatgagtaacgtatgtttctcactcttgagggacaagaaaaaattca
ttacttatatgttatttatatgtatatacacatatatatgccttattaca
tatttatatatataaatggaaagtttgcatattacattaaaatcccatag
cctataatttcaagaaaagctagattccctttggctattcattgaaagct
cagcaccatgtgggttcaactttttcttttcttttttcttttaatttaat
cacataatttatttttttattggatattttcttatttacatttcaaatgt
taccccctttccgattccctcctttcccttccctcccagaaacaccctat
cacatcctcccctccccctgcttcttatgagggtgtctcatctcccaccc
actcactccgctcgatccctacactggcatctatcagctcataagacaga
cctcttctccatgatgcatgacagccacctctgctacaatgcagctgagt
catg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22927112_22928180
seq2: B6Ng01-234P13.b_44_1105 (reverse)

seq1  AGAAGCCCAAATTCAAAGTGACAACGTTATAGAGGTCAGTTCCAGGCTCC  50
      |||||||||||||||| ||||||||| ||||||||||||||||||||| |
seq2  AGAAGCCCAAATTCAAGGTGACAACG-TATAGAGGTCAGTTCCAGGCTTC  49

seq1  TAAGTGGTACCTTCTGGCTGTGTCTTCACCTAGTAGGAGGAATGAGAGTC  100
      ||||||||||| |||||||||||| ||| |||||||||||||||||||| 
seq2  TAAGTGGTACC-TCTGGCTGTGTC-TCA-CTAGTAGGAGGAATGAGAGT-  95

seq1  CTGAATGAGCTCTCTCTCTCTCTCTCTTTTTTTTTAACTTATACATGGAA  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGAATGAGCTCTCTCTCTCTCTCTC-TTTTTTTTAACTTATACATGGAA  144

seq1  GAGTTTATTTCAGCTTATGGTTACAGAGGGATAAGATTCCATCATAGCAG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAG-TTATTTCAGCTTATGGTTACAGAGGGATAAGATTCCATCATAGCAG  193

seq1  GGAACCAGGGCTACAGGAGTAGGAAGCTGAGAGTTCTTATCTTAAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGGGCTACAGGAGTAGGAAGCTGAGAGTTCTTATCTTAAACAGC  243

seq1  AGACAGAAAACAGAGGGAGTACACCCACCCGAAGTAACGTATTTCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAACAGAGGGAGTACACCCACCCGAAGTAACGTATTTCCTCTG  293

seq1  ACAAATGCTGCACCACTTCCCAAACACTGGCACCAACTGGTGACCATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTGCACCACTTCCCAAACACTGGCACCAACTGGTGACCATATC  343

seq1  TGTATGAGCTCTCTTATAATGATATTAATTTATAGCAACCATTAATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGCTCTCTTATAATGATATTAATTTATAGCAACCATTAATCAAG  393

seq1  ACCTAACACACTAAGAACTGCCCCATATTCCATGACCCATCACACTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACACACTAAGAACTGCCCCATATTCCATGACCCATCACACTGGCC  443

seq1  TTAGGTTTCAACCTAAGAAGTTAGGGAAGACAATCAATCAAGCCACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTCAACCTAAGAAGTTAGGGAAGACAATCAATCAAGCCACAGTT  493

seq1  GAGATGCATGAAGGAGGATTAGCTACAAAACACATTCAGATAAAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCATGAAGGAGGATTAGCTACAAAACACATTCAGATAAAAATAAT  543

seq1  CCTAACTAAAGTGTCATGTTCCGTAACAGGGACATATTTTTGTAAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAAAGTGTCATGTTCCGTAACAGGGACATATTTTTGTAAACTCC  593

seq1  AAGCACAGAAACCAGACAGGATTGCCTAATCAAAGCATATAACAGCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGAAACCAGACAGGATTGCCTAATCAAAGCATATAACAGCTAAG  643

seq1  ATCAGAAACCTTAAAATAACTGCTTTTAGGTAATGTTTGGGCTACTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACCTTAAAATAACTGCTTTTAGGTAATGTTTGGGCTACTTTTA  693

seq1  GTCATATTGGTGAGACTTTATGAGTGTAGCTTTTGATATTACTAGGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTGGTGAGACTTTATGAGTGTAGCTTTTGATATTACTAGGAGAC  743

seq1  AATATTTAGGAATATTTATGAATATACATTTACATATGTGCAATAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAGGAATATTTATGAATATACATTTACATATGTGCAATAACAGT  793

seq1  TAGTGAAAAAAGAGGCCAGTAATTTAAAGGAGAACAGGTAATGGCATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAAAAGAGGCCAGTAATTTAAAGGAGAACAGGTAATGGCATCAG  843

seq1  GGAGAGGGAGCGCTGGAGGGAAGAAAGGGAAGGGAGAAATTATAATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAGCGCTGGAGGGAAGAAAGGGAAGGGAGAAATTATAATTAAA  893

seq1  ATACTATCCCAAAAATCTAATTTAAAAGTATGACATGTATTTTTTGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCCCAAAAATCTAATTTAAAAGTATGACATGTATTTTTTGAAAA  943

seq1  CTATTTTAAAGTATATGTAACACAAAACGTGTGTGTGTGTGTGTGTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAAAGTATATGTAACACAAAACGTGTGTGTGTGTGTGTGTGTGT  993

seq1  GTGAGAGAGAGAGAGAGAGAGAGAGAGATCTGTGCTTTACATCATATTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGAGAGAGAGAGAGAGAGAGATCTGTGCTTTACATCATATTTG  1043

seq1  GGGATAAATCTAAGAATTC  1069
      |||||||||||||||||||
seq2  GGGATAAATCTAAGAATTC  1062

seq1: chr19_22807889_22809016
seq2: B6Ng01-234P13.g_68_1171

seq1  GAATTCATCCCCAGCTGGGGTTTAGGAATGCAGATAAGCTTTCTCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCCAGCTGGGGTTTAGGAATGCAGATAAGCTTTCTCTGAAA  50

seq1  CTTTTCCTACTTCCTTCCACAGTACCCCAGAGAAGAAAGGCACCCCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTACTTCCTTCCACAGTACCCCAGAGAAGAAAGGCACCCCAGAG  100

seq1  AAATGGCTGCTATTTAGTAAGCCTTTTTTTTTTTTTTTTTTGTGCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTGCTATTTAGTAAGCCTTTTTTTTTTTTTTTTTTGTGCTTGTG  150

seq1  ACTAAAAAAAGGCAAAACAAATCAGGCTTTGATCTTAGCACAGAGGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAAGGCAAAACAAATCAGGCTTTGATCTTAGCACAGAGGGGTC  200

seq1  TCAAAGGAGTTGAATGTTTTTTAAACTAAAGCATACTGGGCAGGCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGTTGAATGTTTTTTAAACTAAAGCATACTGGGCAGGCATCTT  250

seq1  CTCCAACTCGACCACTGCTTTACATTTATATCTGTATGTATTTGTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTCGACCACTGCTTTACATTTATATCTGTATGTATTTGTCATCT  300

seq1  CCCGCTGTGCATGCATTTTTGATATGAGTATGCATGTGTGCTGTGTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTGTGCATGCATTTTTGATATGAGTATGCATGTGTGCTGTGTGCTA  350

seq1  TATATCTGATGGCTATAAAATTCCTCTGAAGGACTTGTGAGCTCTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGATGGCTATAAAATTCCTCTGAAGGACTTGTGAGCTCTGTACT  400

seq1  GAAGTTGTCACATAAACATTTGGCTATGAAAAGAAAGAATGCTCCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTCACATAAACATTTGGCTATGAAAAGAAAGAATGCTCCCCTGA  450

seq1  TAATCTACTAAGGGTCCTCTCAGAAAAAAAAAAAAATTTTCCTTTCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTACTAAGGGTCCTCTCAGAAAAAAAAAAAAATTTTCCTTTCCACA  500

seq1  AAGGGCTTTGTGAGGCTTCAGTGACTTACCAGTTTAGATTGTAAACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTTGTGAGGCTTCAGTGACTTACCAGTTTAGATTGTAAACACAG  550

seq1  TCACACACACACACACACACAAACATATTTGTGTATATATACATATAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACAAACATATTTGTGTATATATACATATAGGT  600

seq1  GTTTATGAGTAACGTATGTTTCTCACTCTTGAGGGACAAGAAAAAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAGTAACGTATGTTTCTCACTCTTGAGGGACAAGAAAAAATTCA  650

seq1  TTACTTATATGTTATTTATATGTATATACACATATATATGCCTTATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATATGTTATTTATATGTATATACACATATATATGCCTTATTACA  700

seq1  TATTTATATATATAAATGG-AAGTTTGCATATTACATTAAAATCCCATAG  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTTATATATATAAATGGAAAGTTTGCATATTACATTAAAATCCCATAG  750

seq1  CCTATAATTTCAAGAAAAGCTAGATTCCCTTTGGCTATTCATTGAAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATTTCAAGAAAAGCTAGATTCCCTTTGGCTATTCATTGAAAGCT  800

seq1  CAGCACCATGT-GGTTCAACTTTTTCTTTTCTTTTTTCTTTTAATTTAAT  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATGTGGGTTCAACTTTTTCTTTTCTTTTTTCTTTTAATTTAAT  850

seq1  CACATAATTTA-TTTTTTATTGGATATTTTCTTTATTTACATTTCAAATG  897
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  CACATAATTTATTTTTTTATTGGATATTTTC-TTATTTACATTTCAAATG  899

seq1  TTACCCCCTTTCCCGATTTCCCTCCTT--CCCTCCCTCCCAGAAACACCC  945
      ||||||||||| |||| ||||||||||  || ||||||||||||||||||
seq2  TTACCCCCTTT-CCGA-TTCCCTCCTTTCCCTTCCCTCCCAGAAACACCC  947

seq1  TATCACATCCT-CCCTCCCCCTGCTTC-TATGAGGGTGTTCCTCCATCCT  993
      ||||||||||| ||||||||||||||| |||||||||||  || ||| ||
seq2  TATCACATCCTCCCCTCCCCCTGCTTCTTATGAGGGTGT--CT-CAT-CT  993

seq1  CCCACCCACTCCCACCTCCCCGCCCTCGATTCCCCTACACTGGGGCATCT  1043
      ||||||||||| | |       | ||||||  |||||||||  |||||||
seq2  CCCACCCACTCACTC-------CGCTCGAT--CCCTACACT--GGCATCT  1032

seq1  ATCCAGCCTTCATAAGACCAAGGACCTCTCCTCCCATTGATGCATGACAA  1093
      || ||||  |||||||||    ||||||| ||||   |||||||||||| 
seq2  AT-CAGC--TCATAAGAC---AGACCTCTTCTCC--ATGATGCATGACA-  1073

seq1  GGCCACCCTCTGCTACATATGCAGCTGAAGTCATG  1128
       |||| ||||||||||| ||||||||| |||||||
seq2  -GCCA-CCTCTGCTACA-ATGCAGCTG-AGTCATG  1104