BAC Information

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BAC

Clone NameB6Ng01-235P20
Chromosome19 (Build37)
Map Location 11,451,486 - 11,616,098
singlet/doubletdoublet
Overlap geneMs4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7
Downstream geneLOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235P20.bB6Ng01-235P20.g
ACCGA047324GA047325
length998698
definitionB6Ng01-235P20.b B6Ng01-235P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,615,116 - 11,616,098)(11,451,486 - 11,452,181)
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtaaatgtccc
acattttctgtatccattctttaactttcctaatgcagcaaaactgtaat
agagttcctagtgttctggtgaccctcccaccataaaattactttctttg
ctacttcataactataattttgccattgctataaatcataatgaaaatac
atgtgttttcagatagtcttaggtgactcctgtgacaaggtcattcaacc
cctaaaggtgtcttgccccacaggttgagagctgctgtcttagaggtacc
gttacttcagcatttttatattggaagcaaagcctctatcatatgttccc
ttagggatcaaatttcatttgtcttactcaatacacatttcttaggttaa
gtttacattagtgaatcatagtacaggcctcagataaaatgataaaaaat
gtttcataaatccccctctccaaagaatttgatgaattcagaaattagga
acaaattcagggaaatcctaggaaattcagtgaactgataaagaagcctg
ccattagaatcttggataatctgttctctgcctggtaaagcagagcctcc
agagagctcagaggtcaccagtgacccctaacattggaataaagaggagc
ttcatggagatgggagcatctgaaaggagagctgatgagtgagcaaagcc
atcacaatggaggagagtgagatgatggaaggacaccttgtgcatctaat
caagtagtaacctcatcccaactggatttgtgaaaggccttcaggggcag
gaatgtgggtttgggtacaatgcagtgactttggttctagattatgcaga
actgcaggatctgttgtagcttctttcagccatgatagtgtttagcagta
agtgaaagcctgccttagaagtccactgttagggaagcacccataggagc
agtggcaacaattgaataactgtggtacctcaatagtgcttttgtgaa
gaattcctttgataaagtagaagaaatatagatttgaaaaaaagattgat
tggacatggagtacaggtaagaacaattattgaattaaaaaaaaacctgt
tttttttttttttttaatatagtcaactgagttaattgttgggccttcct
gtgaaggaagagtcgccacagcattctgaggttttgccacgattttcact
ctactttaggggacactttaaatatcatgatttccaaattcaaattgcgg
cgagtggtactagagcacttatttagttgtgtgtactcgtttgtgtacac
gtgtatgaatgattgtgtatatgggggtgaatgtgtgagagcttcattat
gatttaaatcagaagctaaatttatgatttatgatttaaagctaaattta
tgatttaaatcaaaagctaaattttcacaagtaacaatgaacgagctgtt
gtgtgttagatttaagattatcatttgcaaatttagacttgatattctgc
tcaggggatgatgaagtgtatgaatgggttgaaatatccttatttcaata
atatataatatgtatcccacttcacaaccctgcttttccaactccctcca
caagatatacagacacaaatgcaaggatataaggggaacttaaaatttga
agaaatatgactccacaaaaggcatacattaattcttcaataacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11615116_11616098
seq2: B6Ng01-235P20.b_49_1045 (reverse)

seq1  TCAC-AAAGCACTATTGA-GTACC-CAGTTA-TCAA-TGTTGCCACTGCT  45
      |||| ||||||||||||| ||||| |||||| |||| |||||||||||||
seq2  TCACAAAAGCACTATTGAGGTACCACAGTTATTCAATTGTTGCCACTGCT  50

seq1  CCTATGGGTGCTTCC--TACAGTGGACTTCTAAGGCAG--CTTCACTTAC  91
      |||||||||||||||   ||||||||||||||||||||   |||||||||
seq2  CCTATGGGTGCTTCCCTAACAGTGGACTTCTAAGGCAGGCTTTCACTTAC  100

seq1  TGCT-AACACTATCATGGCTG-AAGAAGCTAC-ACAGATCCTGCAGTTCT  138
      |||| |||||||||||||||| |||||||||| |||||||||||||||||
seq2  TGCTAAACACTATCATGGCTGAAAGAAGCTACAACAGATCCTGCAGTTCT  150

seq1  GCATTATCTAGAACCAAAGTCACTGCATTGTACCC-AACCCACATTCCTG  187
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCATAATCTAGAACCAAAGTCACTGCATTGTACCCAAACCCACATTCCTG  200

seq1  CCCCTGAAGGCCTTTCACAAATCCAGTTGGGATGAGGTTACTACTTGATT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAGGCCTTTCACAAATCCAGTTGGGATGAGGTTACTACTTGATT  250

seq1  AGATGCAC-AGGTGTCCTTCCATCATCTCACTCTCCTCCATTGTGATGGC  286
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACAAGGTGTCCTTCCATCATCTCACTCTCCTCCATTGTGATGGC  300

seq1  TTTGCTCACTCATCAGCTCTCCTTTCAGATGCTCCCATCTCCATGAAGCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCACTCATCAGCTCTCCTTTCAGATGCTCCCATCTCCATGAAGCT  350

seq1  CCTCTTTATTCCAATGTTAGGGGTCACTGGTGACCTCTGAGCTCTCTGGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTATTCCAATGTTAGGGGTCACTGGTGACCTCTGAGCTCTCTGGA  400

seq1  GGCTCTGCTTTACCAGGCAGAGAACAGATTATCCAAGATTCTAATGGCAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCTTTACCAGGCAGAGAACAGATTATCCAAGATTCTAATGGCAG  450

seq1  GCTTCTTTATCAGTTCACTGAATTTCCTAGGATTTCCCTGAATTTGTTCC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTATCAGTTCACTGAATTTCCTAGGATTTCCCTGAATTTGTTCC  500

seq1  TAATTTCTGAATTCATCAAATTCTTTGGAGAGGGGGATTTATGAAACATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTGAATTCATCAAATTCTTTGGAGAGGGGGATTTATGAAACATT  550

seq1  TTTTATCATTTTATCTGAGGCCTGTACTATGATTCACTAATGTAAACTTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATTTTATCTGAGGCCTGTACTATGATTCACTAATGTAAACTTA  600

seq1  ACCTAAGAAATGTGTATTGAGTAAGACAAATGAAATTTGATCCCTAAGGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAAATGTGTATTGAGTAAGACAAATGAAATTTGATCCCTAAGGG  650

seq1  AACATATGATAGAGGCTTTGCTTCCAATATAAAAATGCTGAAGTAACGGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGATAGAGGCTTTGCTTCCAATATAAAAATGCTGAAGTAACGGT  700

seq1  ACCTCTAAGACAGCAGCTCTCAACCTGTGGGGCAAGACACCTTTAGGGGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAAGACAGCAGCTCTCAACCTGTGGGGCAAGACACCTTTAGGGGT  750

seq1  TGAATGACCTTGTCACAGGAGTCACCTAAGACTATCTGAAAACACATGTA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACCTTGTCACAGGAGTCACCTAAGACTATCTGAAAACACATGTA  800

seq1  TTTTCATTATGATTTATAGCAATGGCAAAATTATAGTTATGAAGTAGCAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTATGATTTATAGCAATGGCAAAATTATAGTTATGAAGTAGCAA  850

seq1  AGAAAGTAATTTTATGGTGGGAGGGTCACCAGAACACTAGGAACTCTATT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAATTTTATGGTGGGAGGGTCACCAGAACACTAGGAACTCTATT  900

seq1  ACAGTTTTGCTGCATTAGGAAAGTTAAAGAATGGATACAGAAAATGTGGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGCTGCATTAGGAAAGTTAAAGAATGGATACAGAAAATGTGGG  950

seq1  ACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTC  983
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTC  997

seq1: chr19_11451486_11452181
seq2: B6Ng01-235P20.g_67_764

seq1  GAATTCCTTTGATAAAGTAGAAGAAATATAGATTTGAAAAAAAGATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGATAAAGTAGAAGAAATATAGATTTGAAAAAAAGATTGAT  50

seq1  TGGACATGGAGTACAGGTAAGAACAATTATTGAATTAAAAAAAAACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGGAGTACAGGTAAGAACAATTATTGAATTAAAAAAAAACCTGT  100

seq1  TTTTTTTTTTTTTTTAATATAGTCAACTGAGTTAATTGTTGGGCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAATATAGTCAACTGAGTTAATTGTTGGGCCTTCCT  150

seq1  GTGAAGGAAGAGTCGCCACAGCATTCTGAGGTTTTGCCACGATTTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAAGAGTCGCCACAGCATTCTGAGGTTTTGCCACGATTTTCACT  200

seq1  CTACTTTAGGGGACACTTTAAATATCATGATTTCCAAATTCAAATTGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTAGGGGACACTTTAAATATCATGATTTCCAAATTCAAATTGCGG  250

seq1  CGAGTGGTACTAGAGCACTTATTTAGTTGTGTGTACTCGTTTGTGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGTACTAGAGCACTTATTTAGTTGTGTGTACTCGTTTGTGTACAC  300

seq1  GTGTATGAATGATTGTGTATATGGGGGTGAATGTGTGAGAGCTTCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAATGATTGTGTATATGGGGGTGAATGTGTGAGAGCTTCATTAT  350

seq1  GATTTAAATCAGAAGCTAAATTTATGATTTATGATTTAAAGCTAAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAATCAGAAGCTAAATTTATGATTTATGATTTAAAGCTAAATTTA  400

seq1  TGATTTAAATCAAAAGCTAAATTTTCACAAGTAACAATGAACGAGCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAATCAAAAGCTAAATTTTCACAAGTAACAATGAACGAGCTGTT  450

seq1  GTGTGTTAGATTTAAGATTATCATTTGCAAATTTAGACTTGATATTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTAGATTTAAGATTATCATTTGCAAATTTAGACTTGATATTCTGC  500

seq1  TCAGGGGATGATGAAGTGTATGAATGGGTTGAAATATCCTTA-TTCAATA  549
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAGGGGATGATGAAGTGTATGAATGGGTTGAAATATCCTTATTTCAATA  550

seq1  ATATATAATATGTATCCCACTTCACAACCCTGCTTTTCCAACTCCCTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATATGTATCCCACTTCACAACCCTGCTTTTCCAACTCCCTCCA  600

seq1  CAAGATATACAGACACAAATGCAAGGATATAAGGGGAACTTAAAA-TTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAGATATACAGACACAAATGCAAGGATATAAGGGGAACTTAAAATTTGA  650

seq1  AGAAATATGACTCCACAAAAGGCATACATTAATTCATCAATAACAGAC  696
      ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAATATGACTCCACAAAAGGCATACATTAATTCTTCAATAACAGAC  698