BAC Information

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BAC

Clone NameB6Ng01-236I04
Chromosome19 (Build37)
Map Location 39,812,390 - 39,954,322
singlet/doubletdoublet
Overlap gene9030012A22Rik, Cyp2c40, LOC100043108
Upstream genePlce1, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik
Downstream geneLOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I04.bB6Ng01-236I04.g
ACCGA047711GA047712
length7401,185
definitionB6Ng01-236I04.b B6Ng01-236I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,812,390 - 39,813,129)(39,953,149 - 39,954,322)
sequence
gaattccttgagattactaatgctctatcaggattttaacaccttacaat
atactaagatattacattcttttaaggaatgagagtgaacttaagtactt
tgagattacttcttgtgtgcataccattcacatggaaaatctgattgtat
gtgatttaatgtatttagaagtaaaaatgctaaaacttttcatatagaaa
tttaaataaaaaacataatctttctttaaaagcactaggtgagtagcatc
aagtgtgttagcaaagtaacaaccagcagctcaactttctcataccaaaa
acctgtaaaggtgaatatgacttcaacaactgaaaacaaataggaaaata
ctagagtcaatgaaactgttttgagtttttttaaaggaattattttacta
gttttcatgtgtgcataaattttgactatttgtgttgacatgtgttttag
aaaagtttataaataaaaatatgaaatgctatgtaaaaagaaataataac
atgttgaaatcatgataaaatcagagctataataagtgataaaaatctat
tacaatcagctgagaaataaaaataatccatcacacaactgttactgaga
actacaaacaagattatagaaggacaattagaaacttcagtgaacaggtg
ctatccattgccagagagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaaggagggagggagggagg
gaattccacatatttaagtgttcatctttgttaactcatatgacttttgt
ttgaaggtacacaatttaagatcaccttcaacacaacatcacaaatttga
tcctttgttcacagcaatttcactactgaaatcattctctcatatattat
tgtttttgtttctgtcataaaataactggcttacaggttatagccaccat
tgagggaaccaatgcaggacctcaaagaaggaacctagaagcattaactg
caacagaaaacatgaaggatagcttctcagtcacctattccacttttctt
tctcactttctttttcctactgcctagcatcacatgcccaagactcacat
tgcctacagtgggtttagctagtgtccctatcatcagcaatgaaggaaga
gaacagagagacatgacctcagaatagtttcctggagcaattactcaatt
gaggttccttcttttgagttgactgtagtttgtgtcagcttgactaaact
acttgacaaacactgattatttatttttctttcatgtaacataaatcaca
tgactaataagatgcacacattataaacatatttgtaatgtaatatattg
atagttacttgatataaaatatccacacatttaggttttgcttaagtata
ttaaatgtgatgtttggccatgatgaatatttattttttattggatattt
tatttatttatatttcaaatgatatcccctttcctggtttgtcctctggt
aaccccctattccattgcccctccctttgcttctgtgaggatgctcccca
accataatattgaatatttactttcttttcagtgaatgttattgttgcaa
ttgtactaggtgctgggtctaaattatttgtatatttttgtaattgtagt
atatgcattttggtttgcttgccattacagtattttcctcttcatttctc
ctattattcccagataccacatatattttccctttattatactttcaaaa
tggatattaaaatagcattatgtattttcatagatagtaaattcacgttt
gatggttgaacatgccaaaagacggctcaatttgtttccataaatagtgt
ttgctctccacacattaatatgacatttaaagttcaaggtccttacacca
tttatcccatataagttgcaatctcatgaatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39812390_39813129
seq2: B6Ng01-236I04.b_35_774

seq1  GAATTCCTTGAGATTACTAATGCTCTATCAGGATTTTAACACCTTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAGATTACTAATGCTCTATCAGGATTTTAACACCTTACAAT  50

seq1  ATACTAAGATATTACATTCTTTTAAGGAATGAGAGTGAACTTAAGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGATATTACATTCTTTTAAGGAATGAGAGTGAACTTAAGTACTT  100

seq1  TGAGATTACTTCTTGTGTGCATACCATTCACATGGAAAATCTGATTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTACTTCTTGTGTGCATACCATTCACATGGAAAATCTGATTGTAT  150

seq1  GTGATTTAATGTATTTAGAAGTAAAAATGCTAAAACTTTTCATATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTAATGTATTTAGAAGTAAAAATGCTAAAACTTTTCATATAGAAA  200

seq1  TTTAAATAAAAAACATAATCTTTCTTTAAAAGCACTAGGTGAGTAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAAAACATAATCTTTCTTTAAAAGCACTAGGTGAGTAGCATC  250

seq1  AAGTGTGTTAGCAAAGTAACAACCAGCAGCTCAACTTTCTCATACCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTTAGCAAAGTAACAACCAGCAGCTCAACTTTCTCATACCAAAA  300

seq1  ACCTGTAAAGGTGAATATGACTTCAACAACTGAAAACAAATAGGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAAAGGTGAATATGACTTCAACAACTGAAAACAAATAGGAAAATA  350

seq1  CTAGAGTCAATGAAACTGTTTTGAGTTTTTTTAAAGGAATTATTTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTCAATGAAACTGTTTTGAGTTTTTTTAAAGGAATTATTTTACTA  400

seq1  GTTTTCATGTGTGCATAAATTTTGACTATTTGTGTTGACATGTGTTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGTGTGCATAAATTTTGACTATTTGTGTTGACATGTGTTTTAG  450

seq1  AAAAGTTTATAAATAAAAATATGAAATGCTATGTAAAAAGAAATAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTATAAATAAAAATATGAAATGCTATGTAAAAAGAAATAATAAC  500

seq1  ATGTTGAAATCATGATAAAATCAGAGCTATAATAAGTGATAAAAATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAATCATGATAAAATCAGAGCTATAATAAGTGATAAAAATCTAT  550

seq1  TACAATCAGCTGAGAAATAAAAATAATCCATCACACAACTGTTACTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCAGCTGAGAAATAAAAATAATCCATCACACAACTGTTACTGAGA  600

seq1  ACTACAAACAAGATTATAGAAGGACAATTAGAAACTTCAGTGAACAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAACAAGATTATAGAAGGACAATTAGAAACTTCAGTGAACAGGTG  650

seq1  CTATCCATTGCCAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATTGCCAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  700

seq1  AAAGAAAGAAAGAAAGAAAGAAAGGAGGGAGGGAGGGAGG  740
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGGAGGGAGGGAGGGAGG  740

seq1: chr19_39953149_39954322
seq2: B6Ng01-236I04.g_65_1249 (reverse)

seq1  AAATATTTCATGA----TCCACTTATAT-GAATAAATGGTGTAAGGAACT  45
      ||||| |||||||     | |||||||| | |||||||||||||||| ||
seq2  AAATA-TTCATGAGATTGCAACTTATATGGGATAAATGGTGTAAGGACCT  49

seq1  TTAA-TTTTAATGTCCATA-TAATGT-----GAGACAACACTA-TTAT-G  86
      | || ||| ||||| |||| ||||||     |||  ||||||| |||| |
seq2  TGAACTTTAAATGT-CATATTAATGTGTGGAGAGCAAACACTATTTATGG  98

seq1  AAACAAATGAACCCTTCCTTTTTGCATGTTCACCCTTCAAACACTGAATT  136
      ||||||||  | || | ||||| ||||||||| || ||||||  |||| |
seq2  AAACAAATTGAGCCGT-CTTTTGGCATGTTCAACCATCAAAC-GTGAA-T  145

seq1  TTACTATCTATG-AAATACAT-ATGCTATTTTAATATCCATTTTGAAAGT  184
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  TTACTATCTATGAAAATACATAATGCTATTTTAATATCCATTTTGAAAGT  195

seq1  ATAATAAA-GGAAAATATATGTGGTATCTGGGAATAATAGGAGAAATGAA  233
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  ATAATAAAGGGAAAATATATGTGGTATCTGGGAATAATAGGAGAAATG-A  244

seq1  AGAGGAAAATACTGTAATGGCAAGCAAACCAAAATGCATATACTACAATT  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAATACTGTAATGGCAAGCAAACCAAAATGCATATACTACAATT  294

seq1  ACAAAAATATACAAATAATTTAGACCCAGCACCTAGTACAATTGCAACAA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATACAAATAATTTAGACCCAGCACCTAGTACAATTGCAACAA  344

seq1  TAACATTCACTGAAAAGAAAGTAAATATTCAATATTATGGTTGGGGAGCA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCACTGAAAAGAAAGTAAATATTCAATATTATGGTTGGGGAGCA  394

seq1  TCCTCACAGAAGCAAAGGGAGGGGCAATGGAATAGGGGGTTACCAGAGGA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGAAGCAAAGGGAGGGGCAATGGAATAGGGGGTTACCAGAGGA  444

seq1  CAAACCAGGAAAGGGGATATCATTTGAAATATAAATAAATAAAATATCCA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGGAAAGGGGATATCATTTGAAATATAAATAAATAAAATATCCA  494

seq1  ATAAAAAATAAATATTCATCATGGCCAAACATCACATTTAATATACTTAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAATATTCATCATGGCCAAACATCACATTTAATATACTTAA  544

seq1  GCAAAACCTAAATGTGTGGATATTTTATATCAAGTAACTATCAATATATT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCTAAATGTGTGGATATTTTATATCAAGTAACTATCAATATATT  594

seq1  ACATTACAAATATGTTTATAATGTGTGCATCTTATTAGTCATGTGATTTA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAAATATGTTTATAATGTGTGCATCTTATTAGTCATGTGATTTA  644

seq1  TGTTACATGAAAGAAAAATAAATAATCAGTGTTTGTCAAGTAGTTTAGTC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATGAAAGAAAAATAAATAATCAGTGTTTGTCAAGTAGTTTAGTC  694

seq1  AAGCTGACACAAACTACAGTCAACTCAAAAGAAGGAACCTCAATTGAGTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACACAAACTACAGTCAACTCAAAAGAAGGAACCTCAATTGAGTA  744

seq1  ATTGCTCCAGGAAACTATTCTGAGGTCATGTCTCTCTGTTCTCTTCCTTC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCAGGAAACTATTCTGAGGTCATGTCTCTCTGTTCTCTTCCTTC  794

seq1  ATTGCTGATGATAGGGACACTAGCTAAACCCACTGTAGGCAATGTGAGTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGATGATAGGGACACTAGCTAAACCCACTGTAGGCAATGTGAGTC  844

seq1  TTGGGCATGTGATGCTAGGCAGTAGGAAAAAGAAAGTGAGAAAGAAAAGT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATGTGATGCTAGGCAGTAGGAAAAAGAAAGTGAGAAAGAAAAGT  894

seq1  GGAATAGGTGACTGAGAAGCTATCCTTCATGTTTTCTGTTGCAGTTAATG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGGTGACTGAGAAGCTATCCTTCATGTTTTCTGTTGCAGTTAATG  944

seq1  CTTCTAGGTTCCTTCTTTGAGGTCCTGCATTGGTTCCCTCAATGGTGGCT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGTTCCTTCTTTGAGGTCCTGCATTGGTTCCCTCAATGGTGGCT  994

seq1  ATAACCTGTAAGCCAGTTATTTTATGACAGAAACAAAAACAATAATATAT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGTAAGCCAGTTATTTTATGACAGAAACAAAAACAATAATATAT  1044

seq1  GAGAGAATGATTTCAGTAGTGAAATTGCTGTGAACAAAGGATCAAATTTG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATGATTTCAGTAGTGAAATTGCTGTGAACAAAGGATCAAATTTG  1094

seq1  TGATGTTGTGTTGAAGGTGATCTTAAATTGTGTACCTTCAAACAAAAGTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGTGTTGAAGGTGATCTTAAATTGTGTACCTTCAAACAAAAGTC  1144

seq1  ATATGAGTTAACAAAGATGAACACTTAAATATGTGGAATTC  1174
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTTAACAAAGATGAACACTTAAATATGTGGAATTC  1185