BAC Information

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BAC

Clone NameB6Ng01-237I11
Chromosome19 (Build37)
Map Location 18,791,405 - 18,831,845
singlet/doubletdoublet
Overlap geneD030056L22Rik, Trpm6
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184
Downstream geneRorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237I11.bB6Ng01-237I11.g
ACCGA048461GA048462
length1,133232
definitionB6Ng01-237I11.b B6Ng01-237I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,830,702 - 18,831,845)(18,791,405 - 18,791,636)
sequence
gaattccaagccaagagtggtagaaatcacttccacttttcatattcttg
gatgtcatgaacttaaacaataacaataaatcccaagtaccaccacatac
tgccttcagatgaagtttctagaccattaaccctgaccagcccaccacaa
cttagggagtctcattatgaccattttccccaaagtatgcctgttcccca
ttattctgcctctcatttgaatccaacataggtttgatgagtccaatggg
tgatttccttccccaaattactgtttcaaaagcggtctttggagctggag
aaatggctcagtggataacgtgcttgctgtgtaaacattcgaatgggaat
tcagattccctagaacccatgaaaaagccaaagctcaccaaacagccagc
ttggaattcaggattggcaagaggacgtttgtctcaaaatgcaaatcgga
aagcaaggactaacaactgagttattttctaacctccaaatacacacaca
cacatacacacacatacacaattcactgaacttttacttggggaaacctc
cacctcaggaataatggttgggagttatgaatgagtagatcagtagttct
gagcacttattcttccagaagacttggagtctgttcctggcacccatatg
gttgctcacaatcttctgtaacttcagttcctggagtactttctaacctt
cacaagtactgggtacccacgtaatgcacatatatacatctacacaggca
aaatacttactatgtacataaaataccttttaaaaaaatggaagtttaag
agtagcattttaaagttttcaaagtaattccttaaatgttgcttgagcac
ccgaatcctgtgagaatcctcacttacaaacatgggaaatgcccagcaaa
gtctccgcaacacggcaactcttctgtgtggtccctgagacccgcagaga
tctcagaggattgtggccattgggaattgcaaattaacttttccatggat
atgatatatagatttcaggagacactcaagttttggtcatacatgtgctc
agaaaggatataaaacaatcaagaaaacacccgaacagctatagcacaca
aagatgtccaaatcattcaagtttagaagaaat

ttctccttaaagtcggcctctgtcatagtgcgtgccaccgaagtaaatcg
gtgtgataaatcagtgtaactgggaaaatgtgtaggtagcccagcctggc
tttaagcttacagctcccccacttggccttctgagtgctctgactgggca
tgtcagtctgctcccctgaaacaaagcagttatttcctggtgtttgcgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18830702_18831845
seq2: B6Ng01-237I11.b_47_1179 (reverse)

seq1  ATTTC-TCTAAACCTGAATGATTTTGAACATCTTTTGTGTGCTTATAGCT  49
      ||||| ||||||| ||||||| |||| ||||| ||||||||| |||||||
seq2  ATTTCTTCTAAACTTGAATGA-TTTGGACATC-TTTGTGTGC-TATAGCT  47

seq1  GTTCGGGTGTTTTCTTTGAATGTTTTATATCCTTTCTGAGGCACATGTAT  99
      |||||||||||||| |||| ||||||||||||||||||| ||||||||||
seq2  GTTCGGGTGTTTTC-TTGATTGTTTTATATCCTTTCTGA-GCACATGTAT  95

seq1  TGGAACCAAAACTTGAGGTTGTCTCCTGAAATCTATATATTCATATCCAT  149
          |||||||||||||  |||||||||||||||||||| ||||||||||
seq2  ---GACCAAAACTTGAG--TGTCTCCTGAAATCTATATA-TCATATCCAT  139

seq1  GGAAAAGTTAATTTGCAATTCCAAATGGCCACAATCCTCTTGAGATCTCT  199
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GGAAAAGTTAATTTGCAATTCCCAATGGCCACAATCCTC-TGAGATCTCT  188

seq1  GCGGGTCTCAGGGACCACACAGAAGAGTTGCCGTGTTGCGGAGACTTTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTCTCAGGGACCACACAGAAGAGTTGCCGTGTTGCGGAGACTTTGC  238

seq1  TGGGCATTTCCCATGTTTGTAAGTGAGGATTCTCACAGGATTCGGGTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTCCCATGTTTGTAAGTGAGGATTCTCACAGGATTCGGGTGCT  288

seq1  CAAGCAACATTTAAGGAATTACTTTGAAAACTTTAAAATGCTACTCTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACATTTAAGGAATTACTTTGAAAACTTTAAAATGCTACTCTTAA  338

seq1  ACTTCCATTTTTTTAAAAGGTATTTTATGTACATAGTAAGTATTTTGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTTTTTTAAAAGGTATTTTATGTACATAGTAAGTATTTTGCCT  388

seq1  GTGTAGATGTATATATGTGCATTACGTGGGTACCCAGTACTTGTGAAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGATGTATATATGTGCATTACGTGGGTACCCAGTACTTGTGAAGGT  438

seq1  TAGAAAGTACTCCAGGAACTGAAGTTACAGAAGATTGTGAGCAACCATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTACTCCAGGAACTGAAGTTACAGAAGATTGTGAGCAACCATAT  488

seq1  GGGTGCCAGGAACAGACTCCAAGTCTTCTGGAAGAATAAGTGCTCAGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCAGGAACAGACTCCAAGTCTTCTGGAAGAATAAGTGCTCAGAAC  538

seq1  TACTGATCTACTCATTCATAACTCCCAACCATTATTCCTGAGGTGGAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATCTACTCATTCATAACTCCCAACCATTATTCCTGAGGTGGAGGT  588

seq1  TTCCCCAAGTAAAAGTTCAGTGAATTGTGTATGTGTGTGTATGTGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAGTAAAAGTTCAGTGAATTGTGTATGTGTGTGTATGTGTGTGT  638

seq1  GTGTATTTGGAGGTTAGAAAATAACTCAGTTGTTAGTCCTTGCTTTCCGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTGGAGGTTAGAAAATAACTCAGTTGTTAGTCCTTGCTTTCCGA  688

seq1  TTTGCATTTTGAGACAAACGTCCTCTTGCCAATCCTGAATTCCAAGCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTGAGACAAACGTCCTCTTGCCAATCCTGAATTCCAAGCTGG  738

seq1  CTGTTTGGTGAGCTTTGGCTTTTTCATGGGTTCTAGGGAATCTGAATTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTGAGCTTTGGCTTTTTCATGGGTTCTAGGGAATCTGAATTCC  788

seq1  CATTCGAATGTTTACACAGCAAGCACGTTATCCACTGAGCCATTTCTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGAATGTTTACACAGCAAGCACGTTATCCACTGAGCCATTTCTCCA  838

seq1  GCTCCAAAGACCGCTTTTGAAACAGTAATTTGGGGAAGGAAATCACCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAGACCGCTTTTGAAACAGTAATTTGGGGAAGGAAATCACCCAT  888

seq1  TGGACTCATCAAACCTATGTTGGATTCAAATGAGAGGCAGAATAATGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCATCAAACCTATGTTGGATTCAAATGAGAGGCAGAATAATGGGG  938

seq1  AACAGGCATACTTTGGGGAAAATGGTCATAATGAGACTCCCTAAGTTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCATACTTTGGGGAAAATGGTCATAATGAGACTCCCTAAGTTGTG  988

seq1  GTGGGCTGGTCAGGGTTAATGGTCTAGAAACTTCATCTGAAGGCAGTATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGGTCAGGGTTAATGGTCTAGAAACTTCATCTGAAGGCAGTATG  1038

seq1  TGGTGGTACTTGGGATTTATTGTTATTGTTTAAGTTCATGACATCCAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTACTTGGGATTTATTGTTATTGTTTAAGTTCATGACATCCAAGA  1088

seq1  ATATGAAAAGTGGAAGTGATTTCTACCACTCTTGGCTTGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAGTGGAAGTGATTTCTACCACTCTTGGCTTGGAATTC  1133


seq1: chr19_18791405_18791636
seq2: B6Ng01-237I11.g_70_301

seq1  TTCTCCTTAAAGTCGGCCTCTGTCATAGTGCGTGCCACCGAAGTAAATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTAAAGTCGGCCTCTGTCATAGTGCGTGCCACCGAAGTAAATCG  50

seq1  GTGTGATAAATCAGTGTAACTGGGAAAATGTGTAGGTAGCCCAGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAAATCAGTGTAACTGGGAAAATGTGTAGGTAGCCCAGCCTGGC  100

seq1  TTTAAGCTTACAGCTCCCCCACTTGGCCTTCTGAGTGCTCTGACTGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTTACAGCTCCCCCACTTGGCCTTCTGAGTGCTCTGACTGGGCA  150

seq1  TGTCAGTCTGCTCCCCTGAAACAAAGCAGTTATTTCCTGGTGTTTGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTGCTCCCCTGAAACAAAGCAGTTATTTCCTGGTGTTTGCGTG  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  232
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  232


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