BAC Information

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BAC

Clone NameB6Ng01-237K24
Chromosome19 (Build37)
Map Location 58,688,843 - 58,720,730
singlet/doubletdoublet
Overlap genenone
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik
Downstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237K24.bB6Ng01-237K24.g
ACCGA048578GA048579
length1,020611
definitionB6Ng01-237K24.b B6Ng01-237K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,688,843 - 58,689,858)(58,720,119 - 58,720,730)
sequence
gaattctggacatccttaggtttttattagacaagtactgagcgtgtgaa
cactaaccacgtgagtgtatggtgacagcctctcctctcataaaggagcc
tgtggttatatgaggcacctcttgctggcagtgagtctacacaggctcct
cagaaaagtccttccaagctctgcctcgggcaggagctgaactgtctcag
attttatcgtattgttaatggaccttcggaggtctttttctttctctatc
tccgcaatattagttgcatagaacatgaaatgcatttcccatagaaggtg
gggtctgtggcagtgaagtagttaatttataggcctgtcaagacacttga
acctacattgtctaaaaaaataacacagaccttgctgcttaatgagggct
atacttcagatgtccgccgttctgcaaaatgttccaccgcaaaggaattt
cccactgcagtttaatctaaagatggctaacctctgtctatctgcaggga
gggttcaatgaaacagcaatgtagtctgattgctgtgggccagacactcc
caggcatcgaagatgaagattcctgagccacacagttcccactttgatta
agtactcactgtagctagaaacaagtacaaacacgtaaacaggggcgcaa
gaaagttccgtccagggaccagcactgtgaagaaaaggcgaggcagcatg
tgaacaatgtcaagagcgctagacttgcagttctcacaagggtcggggtc
ggtcaacctgagatccgggaccacattctcacagtgtctccctgtgtctc
accttcctgtctgctcaggaaaggctggggtataaggagtccgtacagag
ttgaacttgggctgaatgaggcctttctcttatttgaaaggaaaaaaaaa
caaaatggctgtcggtttttctatcgatcctagagcttgggcagtgagat
gctgtgagctaagtaaagatatgctaaaggctcctgagagctgagtgtta
atgtgatctgatggattagc
gaattctttgccccagtcccttaagctgggatgggtggttgtggttcttt
tatgagttatagatatgttttcattctagggactggtttacaaatgacta
tggtcttggtcagggagaaaatgcagttagagaacttagacccagggatt
tccttttctcttctctattttctctttcttagataaagagaagggggttg
agaagaaagggggtatggaattatcacatagagataatagaataaaaacg
ttaggctgcaggtgcaaacacatatttttctgcctacttgaagtaaatag
gggtgatggcagtgtcggggccaaggatgacaaatagcttttgatttgca
tgtcaacaataattaactggtacggagagcccagagcactggagtgagaa
ggattctgaggtcatatttgatctctgtggggccacagggagggaatgaa
aaatagtatcatgtcggctgtgcgtttccccatcccatctttagctagtt
attttttgacaataaaaagctaagtgcgtttttattggagggtggaaatg
aaggtgtcactctcgggtgagggagtgattgaagatatcagccttttgat
ggatttctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58688843_58689858
seq2: B6Ng01-237K24.b_40_1059

seq1  GAATTCTGGACATCCTTAGGTTTTTATTAGACAAGTACTGAGCGTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGACATCCTTAGGTTTTTATTAGACAAGTACTGAGCGTGTGAA  50

seq1  CACTAACCACGTGAGTGTATGGTGACAGCCTCTCCTCTCATAAAGGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACCACGTGAGTGTATGGTGACAGCCTCTCCTCTCATAAAGGAGCC  100

seq1  TGTGGTTATATGAGGCACCTCTTGCTGGCAGTGAGTCTACACAGGCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATATGAGGCACCTCTTGCTGGCAGTGAGTCTACACAGGCTCCT  150

seq1  CAGAAAAGTCCTTCCAAGCTCTGCCTCGGGCAGGAGCTGAACTGTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTCCTTCCAAGCTCTGCCTCGGGCAGGAGCTGAACTGTCTCAG  200

seq1  ATTTTATCGTATTGTTAATGGACCTTCGGAGGTCTTTTTCTTTCTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCGTATTGTTAATGGACCTTCGGAGGTCTTTTTCTTTCTCTATC  250

seq1  TCCGCAATATTAGTTGCATAGAACATGAAATGCATTTCCCATAGAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAATATTAGTTGCATAGAACATGAAATGCATTTCCCATAGAAGGTG  300

seq1  GGGTCTGTGGCAGTGAAGTAGTTAATTTATAGGCCTGTCAAGACACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTGGCAGTGAAGTAGTTAATTTATAGGCCTGTCAAGACACTTGA  350

seq1  ACCTACATTGTCTAAAAAAATAACACAGACCTTGCTGCTTAATGAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATTGTCTAAAAAAATAACACAGACCTTGCTGCTTAATGAGGGCT  400

seq1  ATACTTCAGATGTCCGCCGTTCTGCAAAATGTTCCACCGCAAAGGAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGATGTCCGCCGTTCTGCAAAATGTTCCACCGCAAAGGAATTT  450

seq1  CCCACTGCAGTTTAATCTAAAGATGGCTAACCTCTGTCTATCTGCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCAGTTTAATCTAAAGATGGCTAACCTCTGTCTATCTGCAGGGA  500

seq1  GGGTTCAATGAAACAGCAATGTAGTCTGATTGCTGTGGGCCAGACACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAATGAAACAGCAATGTAGTCTGATTGCTGTGGGCCAGACACTCC  550

seq1  CAGGCATCGAAGATGAAGATTCCTGAGCCACACAGTTCCCACTTTGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCGAAGATGAAGATTCCTGAGCCACACAGTTCCCACTTTGATTA  600

seq1  AGTACTCACTGTAGCTAGAAACAAGTACAAACACGTAAACAGGGGCGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCACTGTAGCTAGAAACAAGTACAAACACGTAAACAGGGGCGCAA  650

seq1  GAAAGTTCCGTCCAGGGACCAGCACTGTGAAGAAAAGGCGAGGCAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCCGTCCAGGGACCAGCACTGTGAAGAAAAGGCGAGGCAGCATG  700

seq1  TGAACAATGTCAAGAGCGCTAGACTTGCAGTTCTCACAAGGGTC-GGGTC  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAACAATGTCAAGAGCGCTAGACTTGCAGTTCTCACAAGGGTCGGGGTC  750

seq1  GGTCAGCCTGAGATCCGGGACCACATTCTCACAGTGTCTCCCTGTGTCTC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACCTGAGATCCGGGACCACATTCTCACAGTGTCTCCCTGTGTCTC  800

seq1  ACCTTCCTGTCTGCTC-GGGAAGGCTGGGGTATAAGGAGTCCGTACAGAG  848
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  ACCTTCCTGTCTGCTCAGGAAAGGCTGGGGTATAAGGAGTCCGTACAGAG  850

seq1  TTGAACTTGGGCTGAATGAGGCCTTCCTCTTATTTG-AAGGAAAAAAAAA  897
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TTGAACTTGGGCTGAATGAGGCCTTTCTCTTATTTGAAAGGAAAAAAAAA  900

seq1  -AAAATGGCTGTCGGTTTTTCTATCGATCCTAGAGCTTGGGCAGTGAGAT  946
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCTGTCGGTTTTTCTATCGATCCTAGAGCTTGGGCAGTGAGAT  950

seq1  GCTGTGAGCTAAGTAAAGATATGCTAAAGGCTCCTGAGAGCTGAAGTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTGTGAGCTAAGTAAAGATATGCTAAAGGCTCCTGAGAGCTG-AGTGTT  999

seq1  AATGTG-TTTGATGGATTAGC  1016
      |||||| | ||||||||||||
seq2  AATGTGATCTGATGGATTAGC  1020

seq1: chr19_58720119_58720730
seq2: B6Ng01-237K24.g_62_672 (reverse)

seq1  TGGAGAAATCCATCAAGAGGCTGATATCTTCAATCACTCCCTCACCCGAG  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAGAAATCCATCAAAAGGCTGATATCTTCAATCACTCCCTCACCCGAG  50

seq1  AGCTGACACCTTCATTTCCACCCTCCAATAAAAACGCACTTAGCTTTTTA  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TGACACCTTCATTTCCACCCTCCAATAAAAACGCACTTAGCTTTTTA  99

seq1  TTGTCAAAAAATAACTAGCTAAAGATGGGATGGGGAAACGCACAGCCGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAAAATAACTAGCTAAAGATGGGATGGGGAAACGCACAGCCGAC  149

seq1  ATGATACTATTTTTCATTCCCTCCCTGTGGCCCCACAGAGATCAAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACTATTTTTCATTCCCTCCCTGTGGCCCCACAGAGATCAAATATG  199

seq1  ACCTCAGAATCCTTCTCACTCCAGTGCTCTGGGCTCTCCGTACCAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAATCCTTCTCACTCCAGTGCTCTGGGCTCTCCGTACCAGTTAA  249

seq1  TTATTGTTGACATGCAAATCAAAAGCTATTTGTCATCCTTGGCCCCGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGACATGCAAATCAAAAGCTATTTGTCATCCTTGGCCCCGACA  299

seq1  CTGCCATCACCCCTATTTACTTCAAGTAGGCAGAAAAATATGTGTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCACCCCTATTTACTTCAAGTAGGCAGAAAAATATGTGTTTGCA  349

seq1  CCTGCAGCCTAACGTTTTTATTCTATTATCTCTATGTGATAATTCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCTAACGTTTTTATTCTATTATCTCTATGTGATAATTCCATAC  399

seq1  CCCCTTTCTTCTCAACCCCCTTCTCTTTATCTAAGAAAGAGAAAATAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTTCTCAACCCCCTTCTCTTTATCTAAGAAAGAGAAAATAGAG  449

seq1  AAGAGAAAAGGAAATCCCTGGGTCTAAGTTCTCTAACTGCATTTTCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAAGGAAATCCCTGGGTCTAAGTTCTCTAACTGCATTTTCTCCC  499

seq1  TGACCAAGACCATAGTCATTTGTAAACCAGTCCCTAGAATGAAAACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGACCATAGTCATTTGTAAACCAGTCCCTAGAATGAAAACATAT  549

seq1  CTATAACTCATAAAAGAACCACAACCACCCATCCCAGCTTAAGGGACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCATAAAAGAACCACAACCACCCATCCCAGCTTAAGGGACTGG  599

seq1  GGCAAAGAATTC  612
      ||||||||||||
seq2  GGCAAAGAATTC  611