BAC Information

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BAC

Clone NameB6Ng01-237P23
Chromosome19 (Build37)
Map Location 17,800,189 - 17,954,924
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237P23.bB6Ng01-237P23.g
ACCGA048809GA048810
length1,118607
definitionB6Ng01-237P23.b B6Ng01-237P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,800,189 - 17,801,308)(17,954,318 - 17,954,924)
sequence
gaattctgaatgcttatgagaacattccaagagaacaagacaagagtctt
atgacctcagtttcttcaaaaccaagggattgttcttggaatcaagtgtg
ttcttgctcctcctaagtgtaggcaataggtgtgagtttactttagagta
ctcattattgtttgatgtttttcaattaagtatttcaattatcctttata
tgatcctttggaaaaagatgctttgtcccgtgcagcttgtccttatgatt
gtgcaaagcctgacctcatgagaactttgaccttcacatgaccttcacat
gatcttcctatccttcagagtatagactatggctctaaataaagttggct
attgcatgagacatctgcccactgcacttactggcttcattctcctctca
agcagtgatggctagctcagaaaaacacagatttcaacattagaggtctg
gcttctactgcctttgcactataacgacgtcaatcaatttaagttgcaaa
tgatcagtttacttatgaaataattctttcagcccataagcactagggaa
atggaagcggcattgaggtctatagcttttaactgccaaatatttttttg
ctcattcatgtgcatgtttaggttttaatttctagccaagattgaataag
gagtttataggagggaatgaaagcatacaaggtctagtctttgctatttt
atgtccaaagcagagtatattaataacatactaataattattagtatatt
aataataaataagcagataaatgaaacatgtaattagagattgtagcaat
acttataaaggggaaaagttgtcttgaaaaaccattaatgtcatcaaaat
ttattgagtttttttatagttttgttttttattatgtccacctgtattca
atgatcacagccactccaatttgaattgtggcttttatagatatcaaggc
aataactctcagaatggagtgggcagttgaagcaaaatgaaggtttcaga
cctctttctattaagataaccagaaatatcttcactattaataaatttga
aattgaattttcttagacataaagctctggaaaatagagggtagttatgc
actgtcattactgggact
gaattctttgtttagctctgaaccccatttatagctgtctcctatgaggc
tatgccagtgcctggcaaatacagaagtggattctcacagtcatctataa
gatagaacacagggaccccaatggagaagctagagaaagcacccaaggag
ctgaagggatctgcaacccttcagattgtggaacaacaatatgaactaaa
cagtacccccagagctcatatctctagctgcatatgtagcagaagatggg
ctagtcggccatcactgggaagagaggacccttggtattgcaaactttat
atgccccaatacaggggaatgccagggccaagaagcaggagtgggtgggt
agggaagcagagcggagggagggtatagggaacattccagatagcatttg
aaatgtacataaagaaaatatcgaataaaaaaataaattaaaaaaataaa
ataaaatggttagtcttgatagtcaaaaaaagatctctaccacaaattca
aactggacattgttcagatcaaaacaatctaatggaaaggagaaagaaca
gtaggagagagtcagcagtctataggaggtgagcaggaagtgaggatggg
ttttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17800189_17801308
seq2: B6Ng01-237P23.b_40_1157

seq1  GAATTCTGAATGCTTATGAGAACATTCCAAGAAAACAAGACAAGAGTCTT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCTGAATGCTTATGAGAACATTCCAAGAGAACAAGACAAGAGTCTT  50

seq1  ATGACCTCAGTTTCTTCAAAACCAAGGGATTGTTCTTGGAATCAAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTCAGTTTCTTCAAAACCAAGGGATTGTTCTTGGAATCAAGTGTG  100

seq1  TTCTTGCTCCTCCTAAGTGTAGGCAATAGGTGTGAGTTTACTTTAGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTCCTCCTAAGTGTAGGCAATAGGTGTGAGTTTACTTTAGAGTA  150

seq1  CTCATTATTGTTTGATGTTTTTCAATTAAGTATTTCAATTATCCTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTGTTTGATGTTTTTCAATTAAGTATTTCAATTATCCTTTATA  200

seq1  TGATCCTTTGGAAAAAGATGCTTTGTCCCGTGCAGCTTGTCCTTATGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTTGGAAAAAGATGCTTTGTCCCGTGCAGCTTGTCCTTATGATT  250

seq1  GTGCAAAGCCTGACCTCATGAGAACTTTGACCTTCACATGACCTTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGCCTGACCTCATGAGAACTTTGACCTTCACATGACCTTCACAT  300

seq1  GATCTTCCTATCCTTCAGAGTATAGACTATGGCTCTAAATAAAGTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTATCCTTCAGAGTATAGACTATGGCTCTAAATAAAGTTGGCT  350

seq1  ATTGCATGAGACATCTGCCCACTGCACTTACTGGCTTCATTCTCCTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGAGACATCTGCCCACTGCACTTACTGGCTTCATTCTCCTCTCA  400

seq1  AGCAGTGATGGCTAGCTCAGAAAAACACAGATTTCAACATTAGAGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGATGGCTAGCTCAGAAAAACACAGATTTCAACATTAGAGGTCTG  450

seq1  GCTTCTACTGCCTTTGCACTATAACGACGTCAATCAATTTAAGTTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACTGCCTTTGCACTATAACGACGTCAATCAATTTAAGTTGCAAA  500

seq1  TGATCAGTTTACTTATGAAATAATTCTTTCAGCCCATAAGCACTAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTTTACTTATGAAATAATTCTTTCAGCCCATAAGCACTAGGGAA  550

seq1  ATGGAAGCGGCATTGAGGTCTATAGCTTTTAACTGCCAAATATTTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCGGCATTGAGGTCTATAGCTTTTAACTGCCAAATATTTTTTTG  600

seq1  CTCATTCATGTGCATGTTTAGGTTTTAATTTCTAGCCAAGATTGAATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCATGTGCATGTTTAGGTTTTAATTTCTAGCCAAGATTGAATAAG  650

seq1  GAGTTTATAGGAGGGAATGAAAGCATACAAGGTCTAGTCTTTGCTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATAGGAGGGAATGAAAGCATACAAGGTCTAGTCTTTGCTATTTT  700

seq1  ATGTCCAAAGCAGAGTATATTAATAACATACTAATAATTATTAGTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAAGCAGAGTATATTAATAACATACTAATAATTATTAGTATATT  750

seq1  AATAATAAATAAGCAGATAAATGAAACATGTAATTAGAGATTGTAGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATAAGCAGATAAATGAAACATGTAATTAGAGATTGTAGCAAT  800

seq1  ACTTATAAA-GGGAAAAGTTGTCTTGAAAAA-CATTAATGTCATC-AAAT  847
      ||||||||| ||||||||||||||||||||| ||||||||||||| ||||
seq2  ACTTATAAAGGGGAAAAGTTGTCTTGAAAAACCATTAATGTCATCAAAAT  850

seq1  TTATTGAGTTTTTTTATAGTTTTGTTTTTTATTATGTCCACCTGTATTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGTTTTTTTATAGTTTTGTTTTTTATTATGTCCACCTGTATTCA  900

seq1  ATGATCACAGCCACTCCAATTTGAATTGTGGCTTTTATAGATATC-AGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGATCACAGCCACTCCAATTTGAATTGTGGCTTTTATAGATATCAAGGC  950

seq1  AATAACTCTCAGAATGGAGTGGGCAGTTGAAGCAAAATTGAGGTTCCAGA  996
      ||||||||||||||||||||||||||||||||||||||  ||||| ||||
seq2  AATAACTCTCAGAATGGAGTGGGCAGTTGAAGCAAAATGAAGGTTTCAGA  1000

seq1  CCTCTTCCTATTTAAGATAACACAGAAATATCTTCACCTAATAATTAAAA  1046
      |||||| ||| |||||||||| |||||||||||||| ||| ||||  |||
seq2  CCTCTTTCTA-TTAAGATAAC-CAGAAATATCTTCA-CTATTAAT--AAA  1045

seq1  TTGAAAATTGAAATTTTCTTTAGACATAAAGCTCTGAAAAATAGAGGGTA  1096
      ||  |||||| ||||||| ||||||||||||||||| |||||||||||||
seq2  TTTGAAATTG-AATTTTC-TTAGACATAAAGCTCTGGAAAATAGAGGGTA  1093

seq1  G-TATGCACTGTCATTACTGGGACT  1120
      | |||||||||||||||||||||||
seq2  GTTATGCACTGTCATTACTGGGACT  1118

seq1: chr19_17954318_17954924
seq2: B6Ng01-237P23.g_67_673 (reverse)

seq1  CATAAAACCCATCCTCACTTCCTGCTCACCTCCTCTAGACTGCTGACTCT  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATAAAACCCATCCTCACTTCCTGCTCACCTCCTATAGACTGCTGACTCT  50

seq1  CTCCTACTGTTCTTTCTCCTTTCCATTAGATTGTTTTGATCTGAACAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTGTTCTTTCTCCTTTCCATTAGATTGTTTTGATCTGAACAATG  100

seq1  TCCAGTTTGAATTTGTGGTAGAGATCTTTTTTTGACTATCAAGACTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTGAATTTGTGGTAGAGATCTTTTTTTGACTATCAAGACTAACC  150

seq1  ATTTTATTTTATTTTTTTAATTTATTTTTTTATTCGATATTTTCTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTTTTAATTTATTTTTTTATTCGATATTTTCTTTATG  200

seq1  TACATTTCAAATGCTATCTGGAATGTTCCCTATACCCTCCCTCCGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGCTATCTGGAATGTTCCCTATACCCTCCCTCCGCTCTG  250

seq1  CTTCCCTACCCACCCACTCCTGCTTCTTGGCCCTGGCATTCCCCTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTACCCACCCACTCCTGCTTCTTGGCCCTGGCATTCCCCTGTATT  300

seq1  GGGGCATATAAAGTTTGCAATACCAAGGGTCCTCTCTTCCCAGTGATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATATAAAGTTTGCAATACCAAGGGTCCTCTCTTCCCAGTGATGGC  350

seq1  CGACTAGCCCATCTTCTGCTACATATGCAGCTAGAGATATGAGCTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAGCCCATCTTCTGCTACATATGCAGCTAGAGATATGAGCTCTGGG  400

seq1  GGTACTGTTTAGTTCATATTGTTGTTCCACAATCTGAAGGGTTGCAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTTTAGTTCATATTGTTGTTCCACAATCTGAAGGGTTGCAGATC  450

seq1  CCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGGTCCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATTGGGGTCCCTGTG  500

seq1  TTCTATCTTATAGATGACTGTGAGAATCCACTTCTGTATTTGCCAGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTTATAGATGACTGTGAGAATCCACTTCTGTATTTGCCAGGCAC  550

seq1  TGGCATAGCCTCATAGGAGACAGCTATAAATGGGGTTCAGAGCTAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGCCTCATAGGAGACAGCTATAAATGGGGTTCAGAGCTAAACAA  600

seq1  AGAATTC  607
      |||||||
seq2  AGAATTC  607