BAC Information

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BAC

Clone NameB6Ng01-238J09
Chromosome19 (Build37)
Map Location 39,316,163 - 39,317,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
Downstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238J09.bB6Ng01-238J09.g
ACCGA049241GA049242
length1,0861,197
definitionB6Ng01-238J09.b B6Ng01-238J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacactcatgaccttgaagaatttgggcatggggaaaaggaacat
tgaggaccgtgttcaagaggaagcacagtgtcttgtggaagaactgagga
aaaccaatggtgagcaaagctttgtgttttgacttttccattctgtcata
ggttagagtacaaaagatctactggtgttattctagctgaagtgtttttc
tgttgcttttgaatcctatatcatgaacacagattttattataattttta
atgagttaaatccttagaaaaagtataccttatttactgctgatcatttt
tgagagaataattgcttttgacaatggtggtatggacttcatctatattt
atagattctaaaccagataatatttgttttcattttgttgaactactttg
gtctccccaacttcactgatgtatcaatgtgtctttaatgctcattttcc
acagtcctgggtgtttatgagtcaaagtatatttatcattccttagctgt
gtgtaatagaattttttcatgatttgaaaaagtctttcaatgtgattttc
ctgttttaagaaattacacatagcagcgttaatctgcaaaatgcacaaat
ttaacaaagtgacttgcttaactaaacttgaactatttttattatcacta
tcttatatttctctaagtatattatagatctgtcttctgttctgtaaaca
attttttctctacagtcactgttttgccttaaaacatgagcagatcttaa
tttgtggcattgtgaatgctacttatccagaaagtacttgtcaaatactc
aggttatctacttaaattctgaagaaccttgtcttttttttttccatttt
ttattaggtatttagctcatttacatttccaatgctataccaaaagtccc
ccatacccgaccacccccactcccctaccaccactcccccttttggccct
gggcattccctgtactggggcatacaaagtttgcgtgtccaatgggcctc
ttctttccagtgatggccgactagagtcaagagctccggggtactgctaa
gttcataaattgttgccactataggtttgcgaatcc
gaattcactcaggacaaccggaatcttctgtggcaaaaagctttattgct
tacttctcaggaggaagaccacgaacccagaaaatggcactgcttatata
gcccgcagcatgacgtttcagcaactgatgtggcatgacatctcctgatt
cattcctcgcccatcaccccattactatgccccgagatggacagtgacta
ggcgtgaattcactcttgcacttgcccataaggcttgtttactagttagg
tgcagtggaagccagcgccatcttataatggtgattgctcacggcacggc
tctccacaaattagggaaacaacacccttcacactactcacaaataatat
aaaataccttggcgtgactctaacaaaggaagtgaaagatccatatgata
agaacttccagactctgaaaaaagatattaaagaagatctcataagatgg
aaagatctcccatgctcatggaatggcaggatcaatatagtaaaaatggc
tatcttgccaaaagcaatctacatattaaatgcaatccccatcaaaattc
caactcaattcgtcaacaaattggaaagggcaataaccaaattcatctgg
aataacaaaaaaaaaaaaaaaaaaaaaaaaaaaacctagaatagcaaaaa
ctcttctcaaggattaaagaacctctggtggaatcaccatgcctgaccta
aagctttactacagagcaatttgtgataaaaagctgcatggtactggtat
agtgacagacaagtagaccaatggaacagaattgaagacacagaaatgaa
cccacacacctatggtcactcgatctttgacaagaaagctaattactatc
cagtggaaaaaaagacagcatttttcaacaaaattgtgatggcacaactg
gcagttatcatgtagaagaatggaactgatccatttttttctcttgtaca
aagcctcaagtcttaaggtgaatcaaggacctcccacataaaccaggaaa
acatggtgaaacttataaatggagaaagtgaggagagcctcaaagaatat
ggccacaggtgaaaacattccttgaaatagaacagcaatgctggtgctgg
taagatccaagaatcgacatgggctgtaataaattgcaaaaatcgcctga
taatttgcaagctttcgtgccaaggcataggaacatcgatccatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39316163_39317251
seq2: B6Ng01-238J09.b_48_1133

seq1  GAATTCACACTCATGACCTTGAAGAATTTGGGCATGGGGAAAAGGAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCATGACCTTGAAGAATTTGGGCATGGGGAAAAGGAACAT  50

seq1  TGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGA  100

seq1  AAACCAATGGTGAGCAAAGCTTTGTGTTTTGACTTTTCCATTCTGTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGGTGAGCAAAGCTTTGTGTTTTGACTTTTCCATTCTGTCATA  150

seq1  GGTTAGAGTACAAAAGATCTACTGGTGTTATTCTAGCTGAAGTGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGTACAAAAGATCTACTGGTGTTATTCTAGCTGAAGTGTTTTTC  200

seq1  TGTTGCTTTTGAATCCTATATCATGAACACAGATTTTATTATAATTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTTGAATCCTATATCATGAACACAGATTTTATTATAATTTTTA  250

seq1  ATGAGTTAAATCCTTAGAAAAAGTATACCTTATTTACTGCTGATCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAAATCCTTAGAAAAAGTATACCTTATTTACTGCTGATCATTTT  300

seq1  TGAGAGAATAATTGCTTTTGACAATGGTGGTATGGACTTCATCTATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATAATTGCTTTTGACAATGGTGGTATGGACTTCATCTATATTT  350

seq1  ATAGATTCTAAACCAGATAATATTTGTTTTCATTTTGTTGAACTACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTAAACCAGATAATATTTGTTTTCATTTTGTTGAACTACTTTG  400

seq1  GTCTCCCCAACTTCACTGATGTATCAATGTGTCTTTAATGCTCATTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCAACTTCACTGATGTATCAATGTGTCTTTAATGCTCATTTTCC  450

seq1  ACAGTCCTGGGTGTTTATGAGTCAAAGTATATTTATCATTCCTTAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTGGGTGTTTATGAGTCAAAGTATATTTATCATTCCTTAGCTGT  500

seq1  GTGTAATAGAATTTTTTCATGATTTGAAAAAGTCTTTCAATGTGATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATAGAATTTTTTCATGATTTGAAAAAGTCTTTCAATGTGATTTTC  550

seq1  CTGTTTTAAGAAATTACACATAGCAGCGTTAATCTGCAAAATGCACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAGAAATTACACATAGCAGCGTTAATCTGCAAAATGCACAAAT  600

seq1  TTAACAAAGTGACTTGCTTAACTAAACTTGAACTATTTTTATTATCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAGTGACTTGCTTAACTAAACTTGAACTATTTTTATTATCACTA  650

seq1  TCTTATATTTCTCTAAGTATATTATAGATCTGTCTTCTGTTCTGTAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATTTCTCTAAGTATATTATAGATCTGTCTTCTGTTCTGTAAACA  700

seq1  ATTTTTTCTCTACAGTCACTGTTTTGCCTTAAAACATGAGCAGATCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTCTACAGTCACTGTTTTGCCTTAAAACATGAGCAGATCTTAA  750

seq1  TTTGTGGCATTGTGAATGCTACTTATCCAGAAAGTACTTGTCAAATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCATTGTGAATGCTACTTATCCAGAAAGTACTTGTCAAATACTC  800

seq1  AGGTTATCTACTTAAATTCTGAAGAACCTTGTCTTTTTTTTTTCCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCTACTTAAATTCTGAAGAACCTTGTCTTTTTTTTTTCCATTTT  850

seq1  TTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  900

seq1  CCATACCCGACCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGC  950
      |||||||||||||||||||||||||||||   |||||||||| |||||||
seq2  CCATACCCGACCACCCCCACTCCCCTACC--ACCACTCCCCC-TTTTGGC  947

seq1  CCT-GGCATTCCCCTGTACTGGGGCATACAAAGTTTGCGTGTCCAATGGG  999
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCATT-CCCTGTACTGGGGCATACAAAGTTTGCGTGTCCAATGGG  996

seq1  CCTC-TCTTTCCAGTGATGGCCGACTAGAGTCAAGAGCTCCGGGGTACTG  1048
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTTCCAGTGATGGCCGACTAGAGTCAAGAGCTCCGGGGTACTG  1046

seq1  GTTAGTTCATAATATTGTTCCACCTATAGGGTTGCGGATCC  1089
       | ||||||||| |||||| |  ||||||| ||||| ||||
seq2  CTAAGTTCATAA-ATTGTTGCCACTATAGGTTTGCGAATCC  1086