BAC Information

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BAC

Clone NameB6Ng01-242O20
Chromosome19 (Build37)
Map Location 11,649,479 - 11,650,630
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454
Downstream geneMs4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242O20.bB6Ng01-242O20.g
ACCGA052445GA052446
length1,1791,128
definitionB6Ng01-242O20.b B6Ng01-242O20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggctccttgagctcat
ctagtgatgagtataggctccttctcctagagacctccgctaattgatct
tttttcttttcttttttcttttccttccttctaatctctccccaggtatt
cttacctgacctaaacttttcctcaggttcaagacccgtggaaaggcctg
tatacttattttgtgaaccatatttcctctttgctcctactctctctccc
cgctttacttctgatagattgccctgaatttcatccagaattttcagccc
tgccttaaccgcttgataacatgtgaaaaggaacaaaagggctcctaaca
ctagaaaaagttcaaggccaaacataccttgtaaagctatttcccacttt
acttctgatagactgtcttgaatttcgttagaaagttcaagaccagactt
accttgtaaagctatacttacgggtaccctgttccccagctgaagagttc
tgaattcacgtagttgaatccttctcaacagtctgtgttgtgggaacact
ttattaccaccgttccccagctgaagagttctgaattcacgcagttgaat
ccttctcaacagtctgttttacgggaacctttatgaccgtgacccgcagt
tctggttccggaatgagggatcttccttgcgccagtgatggtaaacgtcc
cgggttttctcatcccgggtttcagcaccaactcttacacgcgttctcgc
gaccggccaggaaagacgcagcaaaccggaatcttctgcggcaaaacttt
attgcttacatcttcaggagcaagagtgcaagagcgagaatggcgaaacc
ccgtccctttttaaggagaattattctccgcctaggacgtattactccct
gattggctgcagcccatcggccgagttgtcatcacggggaaggcagagca
catgtagtggaaaactacccttgggcacaatgcgcagattatttgttacc
acttagaacacaggatgtcagcgcatcttgcacggcgaaatgtgagggcg
ctcccccacaactgtaatctcttctaatcctgatctctgtctaactggtt
cataggtgttatgggctagttctcgaaaacttccagttatgtacacccta
gccccaattgtttctctaaactccccaag
gaattctatgattctgaaagtcagatgacatctttggtcagcctccactg
cctcagaatcataaccaccgagaaccagaattccacactgttaggatttg
tatcaaatggcatcactgagcagttatgctttggcagtgtgttacaccaa
tgtccacatctgttaagtttgtttactaactatatatattagctctctca
tgttgggatttctgtaggtgtggacatatgggttgaaagtcttccttcag
gcatgacacacataggattgagcagatgggttccaataagcagcctcgag
gcctggaacacatgggtgagagaaaaaagacacactagtgatgggtaaaa
tcaagttaggaatagacataatttaaaatccaaaacattgaaggcaagac
tggaggctggcacattgctgttttccttcaaaggtgcaaatttcagtccg
atagttatgagttataagtgaccccagaagtctggaaagaagaactctgg
tcataagatgatgttttcaaacatttttttttttttttactgacacagag
ttcattttattaaatatttccatcagtgattagatgagtggtttagagac
tgctgaacaaatggtagaataatcttaatcagaaatgaaaatatcagaat
acagatgtttcccagggcagagagatgagcgaaaataatgtattgaatga
acaggtcaaaaggcaggagaattaaatgtctcaatacccaaggtaaaaca
aaagaagtcttgtacaggtatatggcaggaaaattggtatttgaggcggc
gcatggagaacgagcaggaattacagctgacaagatcgttgccaagactg
acagcatgaggcggctggaaaagtcagctgacttattggctctagcagta
gggacaccgtgtctgttctaatagctggaagccactatgcggaacatctt
cagctgatgccatgtctagctgctgtccctattctgtgcatgcccagatg
tgctggctaacaacacagagctggtgacgctctctgactgcatcctggaa
ggagacgattaagtacttaatcctgcagactctcaagcagttgatctgca
tgcaatccctgaatgaatctttctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11649479_11650630
seq2: B6Ng01-242O20.g_69_1196 (reverse)

seq1  TATCAGAAAGATTCA-TGAGTATTTGCATGGCAGGGACTCAACTGGCCTC  49
      ||||||||||||||| | ||   |||||| ||||    |||||||  || 
seq2  TATCAGAAAGATTCATTCAGGGATTGCAT-GCAG---ATCAACTG--CT-  43

seq1  TGAGAGTGTCTTGCAGGAATAAGTACTCTAATCTGTCTCCTCTCCAGGGT  99
      |||||||    ||||||| |||||||| ||||| ||||||| |||||| |
seq2  TGAGAGT---CTGCAGGATTAAGTACT-TAATC-GTCTCCT-TCCAGGAT  87

seq1  TGGCAGTCAGAGAGCGCTCACCAGCTCTGTGTTGTTAGGCCAGCACCATC  149
        |||||||||||||| |||||||||||||||||||| ||||||| ||||
seq2  --GCAGTCAGAGAGCG-TCACCAGCTCTGTGTTGTTA-GCCAGCA-CATC  132

seq1  TGGGGCATGGCACAGAATAGGGACAGCAGCTTAAGAACATGGGCATCAGC  199
      | |||||| ||||||||||||||||||||||  || |||| |||||||||
seq2  T-GGGCAT-GCACAGAATAGGGACAGCAGCT--AG-ACAT-GGCATCAGC  176

seq1  TGAAGATGTTCCGCATAGTTGGCTTCCAGCTATTAGAACAGACACGGTGT  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAAGATGTTCCGCATAG-TGGCTTCCAGCTATTAGAACAGACACGGTGT  225

seq1  CCCTACTGCTAGAGCCAATAAGTCAGCTGACTTTTCCAGCCGCCTCATGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTGCTAGAGCCAATAAGTCAGCTGACTTTTCCAGCCGCCTCATGC  275

seq1  TGTCAGTCTTGGCAACGATCTTGTCAGCTGTAATTCCTGCTCGTTCTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCTTGGCAACGATCTTGTCAGCTGTAATTCCTGCTCGTTCTCCA  325

seq1  TGCGCCGCCTCAAATACCAATTTTCCTGCCATATACCTGTACAAGACTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCGCCTCAAATACCAATTTTCCTGCCATATACCTGTACAAGACTTC  375

seq1  TTTTGTTTTACCTTGGGTATTGAGACATTTAATTCTCCTGCCTTTTGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTACCTTGGGTATTGAGACATTTAATTCTCCTGCCTTTTGACC  425

seq1  TGTTCATTCAATACATTATTTTCGCTCATCTCTCTGCCCTGGGAAACATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTCAATACATTATTTTCGCTCATCTCTCTGCCCTGGGAAACATC  475

seq1  TGTATTCTGATATTTTCATTTCTGATTAAGATTATTCTACCATTTGTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGATATTTTCATTTCTGATTAAGATTATTCTACCATTTGTTCA  525

seq1  GCAGTCTCTAAACCACTCATCTAATCACTGATGGAAATATTTAATAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTAAACCACTCATCTAATCACTGATGGAAATATTTAATAAAAT  575

seq1  GAACTCTGTGTCAGTAAAAAAAAAAAAAAATGTTTGAAAACATCATCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGTGTCAGTAAAAAAAAAAAAAAATGTTTGAAAACATCATCTTA  625

seq1  TGACCAGAGTTCTTCTTTCCAGACTTCTGGGGTCACTTATAACTCATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGAGTTCTTCTTTCCAGACTTCTGGGGTCACTTATAACTCATAAC  675

seq1  TATCGGACTGAAATTTGCACCTTTGAAGGAAAACAGCAATGTGCCAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGACTGAAATTTGCACCTTTGAAGGAAAACAGCAATGTGCCAGCCT  725

seq1  CCAGTCTTGCCTTCAATGTTTTGGATTTTAAATTATGTCTATTCCTAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTGCCTTCAATGTTTTGGATTTTAAATTATGTCTATTCCTAACT  775

seq1  TGATTTTACCCATCACTAGTGTGTCTTTTTTCTCTCACCCATGTGTTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTACCCATCACTAGTGTGTCTTTTTTCTCTCACCCATGTGTTCCA  825

seq1  GGCCTCGAGGCTGCTTATTGGAACCCATCTGCTCAATCCTATGTGTGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAGGCTGCTTATTGGAACCCATCTGCTCAATCCTATGTGTGTCA  875

seq1  TGCCTGAAGGAAGACTTTCAACCCATATGTCCACACCTACAGAAATCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAAGGAAGACTTTCAACCCATATGTCCACACCTACAGAAATCCCA  925

seq1  ACATGAGAGAGCTAATATATATAGTTAGTAAACAAACTTAACAGATGTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAGAGCTAATATATATAGTTAGTAAACAAACTTAACAGATGTGG  975

seq1  ACATTGGTGTAACACACTGCCAAAGCATAACTGCTCAGTGATGCCATTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTGTAACACACTGCCAAAGCATAACTGCTCAGTGATGCCATTTG  1025

seq1  ATACAAATCCTAACAGTGTGGAATTCTGGTTCTCGGTGGTTATGATTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATCCTAACAGTGTGGAATTCTGGTTCTCGGTGGTTATGATTCTG  1075

seq1  AGGCAGTGGAGGCTGACCAAAGATGTCATCTGACTTTCAGAATCATAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGGAGGCTGACCAAAGATGTCATCTGACTTTCAGAATCATAGAA  1125

seq1  TTC  1152
      |||
seq2  TTC  1128