BAC Information

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BAC

Clone NameB6Ng01-246M24
ChromosomeX (Build37)19 (Build37)
Map Location 99,057,675 - 99,058,86045,008,781 - 45,009,108
singlet/doubletsingletsinglet
Overlap geneEG621083
Upstream geneTex11, LOC668271, LOC100042392, Slc7a3, Snx12, Mllt7, Gm614, Il2rg, Med12, Nlgn3, LOC100042407, Gjb1, Zmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1
Downstream geneRgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246M24.bB6Ng01-246M24.g
ACCGA055322GA055323
length1,090867
definitionB6Ng01-246M24.b B6Ng01-246M24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,057,675 - 99,058,860)(45,008,781 - 45,009,108)
sequence
gaattccaggtgccaataggggctgctagcatatgtggcagataggtgtc
ccctgtgggtagaggggtggcaaaaacagtgcctcttctaggtgggcaag
ttagggagacattcctttagagataactattaaacgatggatcagcatct
tggcggacccaagcttaaaagctgtcttctccattacaactaaagaaaag
tacccttcttccatgggcagtcagacagacaggacaaccaacttcactga
actgtggccacaatttgaaactccttttcaggagccccctccctatagaa
caacactgccaggttctctgaagcaccagggacagagattggtcagatag
accccgtttgaggaatttccaagcttgcccctccaactcctatcttattg
aactagcctgatcttctgccagttctcctgctgcccatccttccaggcac
agtcatttggtggtagtagactggctatccctcagatgcccaggtgccag
ctacagtttgagggaggcatcagccattcctctgtctgtggctctactct
agaatgaacaaccagggctacttgttaactgtgactaaaacactgctttg
agatcctggatgggaaaatgccactatcatttcttccttcacaatggttt
aaaaacttgactgtgttctcttgaaatgagcttcaaagttgggagtttag
agtctcgtgtggtggtgacttaccatgcaatcttagcacttgggaaggct
gaagcaagaggatcaagagttccagacccaggcctggactctataacaag
acactgtcttttaaaatggctgagtttgggcatagctgagatatttccct
ttttcatgttcttgtcccttaataaagaaaagcagtttatctctaatcct
ggtgatttagagttgggctccaaaaactaaattccttaccccgatcgtca
cactaaggcttgtgctgggcttctgttgccagaatatttgctggatacgt
attccttaagattgccctttaacttcttggagtcttaactctcagggaga
tagtgcagaaagcagtgttacttgcagcatcccagttctt
gaattcactgctcagcaatagaaacaatggaaacacctcaataaggtgaa
aggagaggattgagtcccaaaagttgtcttctgaactccatatgtgcacc
acaatatgtatgtacctacctacttacctactcacccctctctctctaag
taaactcacactttaggatggggtgttgagatggagaccttggaaccacc
aggctttattctttttaaaaatatatttatagctgggcatggtggcacac
gcctttaatcccagcactgggaggcagaggaagctggatctctatgagtt
caaggtcagcctggagtacagagcaagctccaggtcagccaaggctacat
agtgagatggtgtcttataaaacaaaacctcaaagaattaaaatgaaaag
gagggctgtactggctggttttgtgtgtcaatttgacacaagctggagtt
atcacagagaaaggagcttcagatgaggaaatgcctccatgagatccaga
tataagacattttctcaatcagtgatcaagcagggagggcccattgtgga
tggtgccatccctgggctcttgggttctataagaaggcaaactgaggggc
tggagagatggctcaacagttaagagcactgactgctcttccaaaggtcc
tgagttcaaatcccagcaaccccatgctgactcacaaccatctgtaatga
tatctgatgccctcttctggttttgtctgaagacagcaacatgtactcat
atacataaataaatgaatcttttaaaaaatctgtatatttgaaagctaca
aaacttgaaaaagttaacaatgagagcaagaagaaagatattccattctt
atggattagaaatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99057675_99058860
seq2: B6Ng01-246M24.b_46_1135

seq1  GAATTCCAGGTGCCAATAGGGGCTGCTAGCATATGTGGCAGATAGGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCCAATAGGGGCTGCTAGCATATGTGGCAGATAGGTGTC  50

seq1  CCCTGTGGGTAGAGGGGTGGCAAAAACAGTGCCTCTTCTAGGTGGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGGTAGAGGGGTGGCAAAAACAGTGCCTCTTCTAGGTGGGCAAG  100

seq1  TTAGGGAGACATTCCTTTAGAGATAACTATTAAACGATGGATCAGCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGACATTCCTTTAGAGATAACTATTAAACGATGGATCAGCATCT  150

seq1  TGGCGGACCCAAGCTTAAAAGCTGTCTTCTCCATTACAACTAAAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGACCCAAGCTTAAAAGCTGTCTTCTCCATTACAACTAAAGAAAAG  200

seq1  TACCCTTCTTCCATGGGCAGTCAGACAGACAGGACAACCAACTTCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTCTTCCATGGGCAGTCAGACAGACAGGACAACCAACTTCACTGA  250

seq1  ACTGTGGCCACAATTTGAAACTCCTTTTCAGGAGCCCCCTCCCTATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCCACAATTTGAAACTCCTTTTCAGGAGCCCCCTCCCTATAGAA  300

seq1  CAACACTGCCAGGTTCTCTGAAGCACCAGGGACAGAGATTGGTCAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGCCAGGTTCTCTGAAGCACCAGGGACAGAGATTGGTCAGATAG  350

seq1  ACCCCGTTTGAGGAATTTCCAAGCTTGCCCCTCCAACTCCTATCTTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTTTGAGGAATTTCCAAGCTTGCCCCTCCAACTCCTATCTTATTG  400

seq1  AACTAGCCTGATCTTCTGCCAGTTCTCCTGCTGCCCATCCTTCCAGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCTGATCTTCTGCCAGTTCTCCTGCTGCCCATCCTTCCAGGCAC  450

seq1  AGTCATTTGGTGGTAGTAGACTGGCTATCCCTCAGATGCCCAGGTGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTGGTGGTAGTAGACTGGCTATCCCTCAGATGCCCAGGTGCCAG  500

seq1  CTACAGTTTGAGGGAGGCATCAGCCATTCCTCTGTCTGTGGCTCTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTTGAGGGAGGCATCAGCCATTCCTCTGTCTGTGGCTCTACTCT  550

seq1  AGAATGAACAACCAGGGCTACTTGTTAACTGTGACTAAAACACTGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAACAACCAGGGCTACTTGTTAACTGTGACTAAAACACTGCTTTG  600

seq1  AGATCCTGGATGGGAAAATGCCACTATCATTTCTTCCTTCACAATGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGGATGGGAAAATGCCACTATCATTTCTTCCTTCACAATGGTTT  650

seq1  AAAAACTTGACTGTGTTCTCTTGAAATGAGCTTCAAAG-TGGGAGTTTAG  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAACTTGACTGTGTTCTCTTGAAATGAGCTTCAAAGTTGGGAGTTTAG  700

seq1  AGTCTCGTGTGGTGGTGACTTACCATGCAATCTTAGCACTTGGGAAGGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGTGTGGTGGTGACTTACCATGCAATCTTAGCACTTGGGAAGGCT  750

seq1  GAAGCAAGAGGATCAAGAGTTCCAGA-CCAGGCCTGGACTCTATAACAAG  798
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGCAAGAGGATCAAGAGTTCCAGACCCAGGCCTGGACTCTATAACAAG  800

seq1  ACACTGTC-TTTAAAATGGCTGAGTTTGGGCATAGCTGAGATATTTTCCC  847
      |||||||| ||||||||||||||||||||||||||||||||||||| || 
seq2  ACACTGTCTTTTAAAATGGCTGAGTTTGGGCATAGCTGAGATATTTCCCT  850

seq1  TTTTCATGTTCTTGTCCCTTAATAAAAGAAAGCAGTTTATCTCTAAT-CT  896
      ||||||||||||||||||||||||||  ||||||||||||||||||| ||
seq2  TTTTCATGTTCTTGTCCCTTAATAAAGAAAAGCAGTTTATCTCTAATCCT  900

seq1  GGTGATTTAGAGTT-GGCTCCAAAAACT-AATTCC-TACCCCGATCGTCA  943
      |||||||||||||| ||||||||||||| |||||| ||||||||||||||
seq2  GGTGATTTAGAGTTGGGCTCCAAAAACTAAATTCCTTACCCCGATCGTCA  950

seq1  CACTAA-GCCTGTGCT-GGCCTCTG-TGCCAG-ATA-TTGCT-GATACGT  987
      |||||| || |||||| ||| |||| |||||| ||| ||||| |||||||
seq2  CACTAAGGCTTGTGCTGGGCTTCTGTTGCCAGAATATTTGCTGGATACGT  1000

seq1  AATTCTTAAGAGTTGCCTTTAACT--CTGGAGTCTTAACTCTCAGGGAGA  1035
      | | ||||||| |  |||||||||   |||||||||||||||||||||||
seq2  ATTCCTTAAGATTGCCCTTTAACTTCTTGGAGTCTTAACTCTCAGGGAGA  1050

seq1  TAGTGCAGAAAGCAGTGTTAC-TGCAGACACCCAAGTCCTGCTTGGAAAG  1084
      ||||||||||||||||||||| |||||   ||||  || |          
seq2  TAGTGCAGAAAGCAGTGTTACTTGCAGCATCCCAGTTCTT----------  1090

seq1  CACTGGGCACAGGGGCAGGGAAAGCTTCCATAGCTCTTTCCTCTTGTTCT  1134
                                                        
seq2  --------------------------------------------------  1090

seq1  CCAGAACATTTATTCATCCTTCCAGACCCACACTCAGCTCCTGCCAGTTC  1184
                                                        
seq2  --------------------------------------------------  1090

seq1  TT  1186
        
seq2  --  1090

seq1: chr19_45008781_45009108
seq2: B6Ng01-246M24.g_666_848 (reverse)

seq1  TTTTTTAAGATTTACTTTATGTATATGAGTACACACTATAGCTGTACATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTGTGAGCCTTCATCTGATTGTTGGGAATTGAATTTAGGACCTCTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCACTCCCACTCCAGTCAACCCCACCTGCTCAGTCCCTGCTCGCTTTGGC  150
                                                   ||   
seq2  ---------------------------------------------TTTTT  5

seq1  TCAAAGATTTATTTATTATTCTACATAAGTACACCGTAGCTGTCTTCAGA  200
      | ||||||| |||||||  | || || ||||||  || ||||||||||||
seq2  TAAAAGATTCATTTATTTATGTATATGAGTACA-TGTTGCTGTCTTCAGA  54

seq1  -TGCACCAGAAGAGGGCATCAGATCTCATTACGGATGGTTGTGAGCCACC  249
          |||||||||||||||||||| ||||||| |||||||||||| || |
seq2  CAAAACCAGAAGAGGGCATCAGATATCATTACAGATGGTTGTGAGTCAGC  104

seq1  ATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGT  299
      ||| ||||||||||||||||||||||||||||  ||||||||||||||| 
seq2  ATGGGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGC  154

seq1  TCTTACCTGCTGAGCCATCTCAACAGCCC  328
      ||||| ||| |||||||||||  ||||||
seq2  TCTTAACTGTTGAGCCATCTCTCCAGCCC  183