BAC Information

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BAC

Clone NameB6Ng01-260F14
Chromosome19 (Build37)
Map Location 46,318,820 - 46,320,083
singlet/doubletsinglet
Overlap geneGbf1
Upstream geneBtrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, LOC668094
Downstream geneNfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260F14.bB6Ng01-260F14.g
ACCGA065294GA065295
length969214
definitionB6Ng01-260F14.b B6Ng01-260F14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccttgtcagctaggagcccccccacacacacacacacacacac
acacacacacaggagttagagactttttttacccaggtgctggaggtctg
aacccaggcccacgttcttatgcagcaagcaccttactcagccattcccc
ggtctcatggtacatttcttaatgagcctttaaaaagtgttatgtatttc
acccttcctaactgtattctctctaccttaatgtctgttaacacacatgt
gcatgctctcacacacgcacacatttctctttattttttttctgtaagtc
atcaatctctaggtggatccagtggggaatgagaagcaggttttgtacag
ctgatgtgatcactatacagacagccttggaaaatactacccaatctgcc
agttaattaaagcgttaatctgggaagcagccggcccagaaaatgtttac
tcagagaggaggaaaggtagggactgagtagggagtgccctacatttgca
tgaaaatgaagcgctcgctcacgcactcagccctacagccctactttccc
tcccctcagtctctaaggtgggatagccttgatcatatccctgaaagatt
ctggcctgtttgggaaaactcaaaaggaaactagctctgaaaactcaaac
cacagtagagtagaaagaagcaatttaactgtcagcaaagtcaggtaggc
aggaagtccagagtagtgtgtcttaccctggactgagatctgctacagta
gacatatgtgctggcagtgaggtagggtagatgtgtggtttgggaattgt
aaaaccatgtaaatctcagctcctgcttattgtgtgattcaaggccaatc
atgatcttatctaaaaccatacttttttctcaaagactgtgatgcttcct
tcattctcaggacagttagcttacttgtgtgccttggggaaagagggggg
gaaagagggagggataagg
acttcctgactttgcctcccaagttctggaaataaaggcatatgccacca
tatccagctgctcctgctgctccagctgcttctgctgctccagctgctcc
tgctgctccagctgctccagctgctcctgctgctccagctgctccagctg
ctcctgctgcttcctattctttccttcctccttcctccttcctcctcctc
ctcctcctccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46318820_46320083
seq2: B6Ng01-260F14.b_45_1013

seq1  GAATTCACCTTGTCAGCTAGGAGCCCCCCCACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGTCAGCTAGGAGCCCCCCCACACACACACACACACACAC  50

seq1  ACACACACACAGGAGTTAGAGACTTTTTTTACCCAGGTGCTGGAGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGGAGTTAGAGACTTTTTTTACCCAGGTGCTGGAGGTCTG  100

seq1  AACCCAGGCCCACGTTCTTATGCAGCAAGCACCTTACTCAGCCATTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGCCCACGTTCTTATGCAGCAAGCACCTTACTCAGCCATTCCCC  150

seq1  GGTCTCATGGTACATTTCTTAATGAGCCTTTAAAAAGTGTTATGTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATGGTACATTTCTTAATGAGCCTTTAAAAAGTGTTATGTATTTC  200

seq1  ACCCTTCCTAACTGTATTCTCTCTACCTTAATGTCTGTTAACACACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCTAACTGTATTCTCTCTACCTTAATGTCTGTTAACACACATGT  250

seq1  GCATGCTCTCACACACGCACACATTTCTCTTTATTTTTTTTCTGTAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCTCACACACGCACACATTTCTCTTTATTTTTTTTCTGTAAGTC  300

seq1  ATCAATCTCTAGGTGGATCCAGTGGGGAATGAGAAGCAGGTTTTGTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTCTAGGTGGATCCAGTGGGGAATGAGAAGCAGGTTTTGTACAG  350

seq1  CTGATGTGATCACTATACAGACAGCCTTGGAAAATACTACCCAATCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGATCACTATACAGACAGCCTTGGAAAATACTACCCAATCTGCC  400

seq1  AGTTAATTAAAGCGTTAATCTGGGAAGCAGCCGGCCCAGAAAATGTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTAAAGCGTTAATCTGGGAAGCAGCCGGCCCAGAAAATGTTTAC  450

seq1  TCAGAGAGGAGGAAAGGTAGGGACTGAGTAGGGAGTGCCCTACATTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGGAGGAAAGGTAGGGACTGAGTAGGGAGTGCCCTACATTTGCA  500

seq1  TGAAAATGAAGCGCTCGCTCACGCACTCAGCCCTACAGCCCTACTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAAGCGCTCGCTCACGCACTCAGCCCTACAGCCCTACTTTCCC  550

seq1  TCCCCTCAGTCTCTAAGGTGGGATAGCCTTGATCATATCCCTGAAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCAGTCTCTAAGGTGGGATAGCCTTGATCATATCCCTGAAAGATT  600

seq1  CTGGCCTGTTTGGGAAAACTCAAAAGGAAACTAGCTCTGAAAACTCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGTTTGGGAAAACTCAAAAGGAAACTAGCTCTGAAAACTCAAAC  650

seq1  CACAGTAGAGTAGAAAGAAGCAATTTAACTGTCAGCAAAGTCAGGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGAGTAGAAAGAAGCAATTTAACTGTCAGCAAAGTCAGGTAGGC  700

seq1  AGGAAGTCCAGAGTAGTGTGTCTTACCCTGGACTGAGATCTGCTACAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCCAGAGTAGTGTGTCTTACCCTGGACTGAGATCTGCTACAGTA  750

seq1  GACATATGTGCTGGCAGTGAGGTAGGGTAGATGTGTGGTTTGGGAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGTGCTGGCAGTGAGGTAGGGTAGATGTGTGGTTTGGGAATTGT  800

seq1  AAAACCATGTAAATCTCAGCT-CTGCTTATTGTGTGATTCAAGGCCAATC  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAACCATGTAAATCTCAGCTCCTGCTTATTGTGTGATTCAAGGCCAATC  850

seq1  ATGATCTTATCT-AAACCATAC-TTTTTCTCAAAGACTGTGATGC-TCCT  896
      |||||||||||| ||||||||| |||||||||||||||||||||| ||||
seq2  ATGATCTTATCTAAAACCATACTTTTTTCTCAAAGACTGTGATGCTTCCT  900

seq1  TCA-TCTCAGGACAGTTAGC-TACCTGTGTG-CTCTGGGAAAGA-GGGGG  942
      ||| |||||||||||||||| ||| |||||| ||  |||||||| |||||
seq2  TCATTCTCAGGACAGTTAGCTTACTTGTGTGCCTTGGGGAAAGAGGGGGG  950

seq1  GAAAGAGGGAGGGAAGAAGGTGGGTTAAGACCTTGCAAGATTACAAACTG  992
      ||||||||||||| | ||||                              
seq2  GAAAGAGGGAGGG-ATAAGG------------------------------  969

seq1  TCGCTATGACTGGAGGCTGCTCAGCCTTTGCTTATTCCAGGCTTCCTTTC  1042
                                                        
seq2  --------------------------------------------------  969

seq1  CATCAGGGAACTAAAATCAGGTTTCCCTCTCTCCCAGGAATGTCTTTAGT  1092
                                                        
seq2  --------------------------------------------------  969

seq1  TAACAAGGTAAAGATCACCTGTGTATCACTAAAGAAATGATGAAATGAGT  1142
                                                        
seq2  --------------------------------------------------  969

seq1  GTAGAAAATTGACTAAATAAGTATTGTTGGTTTCTTTCCTTTTTTATTTT  1192
                                                        
seq2  --------------------------------------------------  969

seq1  TGTTTGTATTTTGAAGCAAGAGTAGCCTGCTATGTAGTCCTGGTTGCCCT  1242
                                                        
seq2  --------------------------------------------------  969

seq1  GGAACTAGCTCTGTAGATAAGG  1264
                            
seq2  ----------------------  969