BAC Information

Click to search

BAC

Clone NameB6Ng01-261L08
Chromosome19 (Build37)
Map Location 39,146,764 - 39,252,253
singlet/doubletdoublet
Overlap geneCyp2c65, LOC668278, Cyp2c66
Upstream geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507
Downstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261L08.bB6Ng01-261L08.g
ACCGA066309GA066310
length1,1591,151
definitionB6Ng01-261L08.b B6Ng01-261L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,146,764 - 39,147,933)(39,251,108 - 39,252,253)
sequence
gaattccttaccttcttagacatcttaaatgaaaatgtggagattctgag
ttccccttggattcaggtgagttcaagtttctttctttaaaaaccaaacc
aaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacc
aaaccaacaaaaccaaaacaaccaaaccaaaacaaaagaaaacccaacaa
ccacttagagatataggctccatgaaatttcaaaaaattctcaagagaaa
tgaaggcttaactgtgtgctgttagaacactgttcactggttttctatta
attctcaaatcactttctctataaatcttcagatcaatgcttagaagatg
cctacataactcagtggacatttatttcgttgttaaaatctgttagccac
aaggcttatgctccattaaatattttagagacctggtcatcaaaacactt
accagaaacatcataatatgcaataagaatattttcttcaagtagagaca
gtgtttgggatcgaaactgctaggaaccctggagtacagcattgatattt
aatcaacagttgacatcttatagttggcattggagtgacaaaatatttga
gtggtgtgtgtatcctgtcaaaattttcctgtgctgagttggcatatctt
acattttatctaaagactgcttgtatgatcttgaagaaatcatctagctg
gtctgcacaggttcacagttgtaattcaagaacccttgagactttatctg
ttaaatttcttatttcattctcccataggcatttttacaagcaaaaagaa
tttgtatacaaaccatatattcactcaagatggatagcatatattgttta
tatttgtatttactcttcctggccaaggtttactataaaggtacacatac
acacattctgtgttttaagcgtctatcattttcttttgtagatttgcaat
aattttcctgctgtcattgattatctaccaggaagacacagaaaattaca
ttaaaattttgcctttgcagaacattacttttgtcaagtaaaacagcatc
aagagtccactggatattacatcctcggactttattgattgtttcctgat
ccaaattgacagtaaatgttataaaacttcattagtatttgactgcttga
acatttttt
gaattccagtaagggccatcactttacttgagtataaacattgaaatttt
gaaattgaccagataattcacaaaaatggatattcataaggtgtcaatga
gccataccatagattttattaattaggaaaagggtagaaccttaagacaa
gaagtagccatatccactagcagcatagttaacatgcttcagcccacctt
acaacaagtgacccctgtgagatctacattgtccatttttatgccacagt
tataactgggagcaaactattagaggacactgacatataaaccaaccctg
aaacagagaacattatatgaactggaatatttaataggttaatatatgaa
ttatgataaatgtgccaatgtacttcttagcattctggtaaaatactaga
agggccttttcaaagactaacaatatgaacttttaattttatttgaaagt
aaaaacagccaagagaaaatgtgaaaggtctacagtgtcacaaaccaaga
tgtgatctaaaaatttataagcttttattggaaatagcataaaatgtatc
caggttccatatttaaagtgtttacatttttcttatattgtagggacaaa
aaaattgccaccaaccactcagtaaattcttaagaaggtaaaaaaaattt
aaataaagagaaggaatatataaaaaaaagaaggtaaacaatatacactg
agtatctctatgttatttgaaataaaggaaaagtaaattactcagataaa
gacatgtttagtattgctggaaagttatgaagaattttcaataattttca
ataaagacctctaattacttctaaaacaaaaattctagtacagcctggtt
ttgaatatactgtgtgtggtttggttggcttaatctcctaatttctctga
aggttttgcataactttctctttaattattggtaatctggaaattgcaag
actcagtatcttggggcaagtgatctagtttcactcactctaatttggag
aatcaagagcatttagccacaagtgtagaaagaacgacgcttacccttgg
ggatgagattactctctgaattttcacgttcaacggtcacgccattgggg
aaggcctggtggtaaggaaatcaatgatctcttggattcatgtgcatcag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39146764_39147933
seq2: B6Ng01-261L08.b_48_1206

seq1  GAATTCCTTACCTTCTTAGACATCTTAAATGAAAATGTGGAGATTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCTTCTTAGACATCTTAAATGAAAATGTGGAGATTCTGAG  50

seq1  TTCCCCTTGGATTCAGGTGAGTTCAAGTTTCTTTCTTTAAAAACCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTGGATTCAGGTGAGTTCAAGTTTCTTTCTTTAAAAACCAAACC  100

seq1  AAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAACC  150

seq1  AAACCAACAAAACCAAAACAACCAAACCAAAACAAAAGAAAACCCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACAAAACCAAAACAACCAAACCAAAACAAAAGAAAACCCAACAA  200

seq1  CCACTTAGAGATATAGGCTCCATGAAATTTCAAAAAATTCTCAAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGAGATATAGGCTCCATGAAATTTCAAAAAATTCTCAAGAGAAA  250

seq1  TGAAGGCTTAACTGTGTGCTGTTAGAACACTGTTCACTGGTTTTCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTTAACTGTGTGCTGTTAGAACACTGTTCACTGGTTTTCTATTA  300

seq1  ATTCTCAAATCACTTTCTCTATAAATCTTCAGATCAATGCTTAGAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAATCACTTTCTCTATAAATCTTCAGATCAATGCTTAGAAGATG  350

seq1  CCTACATAACTCAGTGGACATTTATTTCGTTGTTAAAATCTGTTAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAACTCAGTGGACATTTATTTCGTTGTTAAAATCTGTTAGCCAC  400

seq1  AAGGCTTATGCTCCATTAAATATTTTAGAGACCTGGTCATCAAAACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTATGCTCCATTAAATATTTTAGAGACCTGGTCATCAAAACACTT  450

seq1  ACCAGAAACATCATAATATGCAATAAGAATATTTTCTTCAAGTAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAACATCATAATATGCAATAAGAATATTTTCTTCAAGTAGAGACA  500

seq1  GTGTTTGGGATCGAAACTGCTAGGAACCCTGGAGTACAGCATTGATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGGATCGAAACTGCTAGGAACCCTGGAGTACAGCATTGATATTT  550

seq1  AATCAACAGTTGACATCTTATAGTTGGCATTGGAGTGACAAAATATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACAGTTGACATCTTATAGTTGGCATTGGAGTGACAAAATATTTGA  600

seq1  GTGGTGTGTGTATCCTGTCAAAATTTTCCTGTGCTGAGTTGGCATATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGTGTATCCTGTCAAAATTTTCCTGTGCTGAGTTGGCATATCTT  650

seq1  ACATTTTATCTAAAGACTGCTTGTATGATCTTGAAGAAATCATCTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATCTAAAGACTGCTTGTATGATCTTGAAGAAATCATCTAGCTG  700

seq1  GTCTGCACAGGTTCACAGTTGTAATTCAAGAACCCTTGAGACTTTATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACAGGTTCACAGTTGTAATTCAAGAACCCTTGAGACTTTATCTG  750

seq1  TTAAATTTCTTATTTCATTCTCCCATAGGCATTTTTACAAGCAAAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCTTATTTCATTCTCCCATAGGCATTTTTACAAGCAAAAAGAA  800

seq1  TTTGTATACAAACCATATATTCACTCAAGATGGATAGCATATATTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATACAAACCATATATTCACTCAAGATGGATAGCATATATTGTTTA  850

seq1  TATTTGTATTTACTCTTCCTGGCCAAGGTTTACTAT-AAGGTACACATAC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTTGTATTTACTCTTCCTGGCCAAGGTTTACTATAAAGGTACACATAC  900

seq1  ACACATTCTGTGTTTTAAGCGTCTATCATTTTCTTTTGTAGATTTGCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTGTGTTTTAAGCGTCTATCATTTTCTTTTGTAGATTTGCAAT  950

seq1  AATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACA  1000

seq1  TAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGC  1049
      | |||||||||||||||||||||||||| |||||||  ||||||||||||
seq2  TTAAAATTTTGCCTTTGCAGAACATTAC-TTTTGTC--AAGTAAAACAGC  1047

seq1  ATCAAGAGT-CACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTT  1098
      ||||||||| ||||||||||||   |||||| ||||||||||||||||||
seq2  ATCAAGAGTCCACTGGATATTA--CATCCTC-GGACTTTATTGATTGTTT  1094

seq1  CCTGATCAAAATGGAACAGGTAAAATGTTAATAAAACTCCAATTTAGTTA  1148
      ||||||| |||| | ||||   ||||||| |||||||| ||  |||| ||
seq2  CCTGATCCAAATTG-ACAG--TAAATGTT-ATAAAACTTCA--TTAG-TA  1137

seq1  TTTGACTGCTTGAGCATTTTTT  1170
      ||||||||||||| ||||||||
seq2  TTTGACTGCTTGAACATTTTTT  1159

seq1: chr19_39251108_39252253
seq2: B6Ng01-261L08.g_69_1219 (reverse)

seq1  ACTGATGCTGTGTTGCATGAGATCC-AGAGATACATTGATCTCCTTCCCA  49
      ||||||||       ||||| |||| |||||| ||||||| ||||| |||
seq2  ACTGATGC------ACATGA-ATCCAAGAGAT-CATTGATTTCCTTACCA  42

seq1  CCA-GCCTTCCCC-ATGCCGTGACCCGTG-ACGTG-AAATTCAGAGAGT-  94
      ||| ||||||||| ||| |||||||  || ||||| ||||||||||||| 
seq2  CCAGGCCTTCCCCAATGGCGTGACCGTTGAACGTGAAAATTCAGAGAGTA  92

seq1  ATCTCATTCCCAA-GGTAAGCGTCCTTC-TTCTACAC-TGTGCCTTAATG  141
      ||||||| ||||| |||||||||| ||| |||||||| |||| || ||||
seq2  ATCTCATCCCCAAGGGTAAGCGTCGTTCTTTCTACACTTGTGGCTAAATG  142

seq1  CTCTTGA-TCT-CAAATTAGAGTGAGTGAAACTAGATCACTTG-CCCAAG  188
      ||||||| ||| ||||||||||||||||||||||||||||||| ||||||
seq2  CTCTTGATTCTCCAAATTAGAGTGAGTGAAACTAGATCACTTGCCCCAAG  192

seq1  ATACTGAGTCTTGCAATTTCCAGATTACCAAT-ATTAAAGAGAAAGTTAT  237
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATACTGAGTCTTGCAATTTCCAGATTACCAATAATTAAAGAGAAAGTTAT  242

seq1  GCAAAACCTTCAGAGAAATTAGGAGATTAAGCCAACCAAACCACACACAG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCTTCAGAGAAATTAGGAGATTAAGCCAACCAAACCACACACAG  292

seq1  TATATTCAAAACCAGGCTGTACTAGAATTTTTGTTTTAGAAGTAATTAGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAAAACCAGGCTGTACTAGAATTTTTGTTTTAGAAGTAATTAGA  342

seq1  GGTCTTTATTGAAAATTATTGAAAATTCTTCATAACTTTCCAGCAATACT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTATTGAAAATTATTGAAAATTCTTCATAACTTTCCAGCAATACT  392

seq1  AAACATGTCTTTATCTGAGTAATTTACTTTTCCTTTATTTCAAATAACAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTCTTTATCTGAGTAATTTACTTTTCCTTTATTTCAAATAACAT  442

seq1  AGAGATACTCAGTGTATATTGTTTACCTTCTTTTTTTTATATATTCCTTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACTCAGTGTATATTGTTTACCTTCTTTTTTTTATATATTCCTTC  492

seq1  TCTTTATTTAAATTTTTTTTACCTTCTTAAGAATTTACTGAGTGGTTGGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTAAATTTTTTTTACCTTCTTAAGAATTTACTGAGTGGTTGGT  542

seq1  GGCAATTTTTTTGTCCCTACAATATAAGAAAAATGTAAACACTTTAAATA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTTTTTGTCCCTACAATATAAGAAAAATGTAAACACTTTAAATA  592

seq1  TGGAACCTGGATACATTTTATGCTATTTCCAATAAAAGCTTATAAATTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTGGATACATTTTATGCTATTTCCAATAAAAGCTTATAAATTTT  642

seq1  TAGATCACATCTTGGTTTGTGACACTGTAGACCTTTCACATTTTCTCTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACATCTTGGTTTGTGACACTGTAGACCTTTCACATTTTCTCTTG  692

seq1  GCTGTTTTTACTTTCAAATAAAATTAAAAGTTCATATTGTTAGTCTTTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTTACTTTCAAATAAAATTAAAAGTTCATATTGTTAGTCTTTGA  742

seq1  AAAGGCCCTTCTAGTATTTTACCAGAATGCTAAGAAGTACATTGGCACAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCTTCTAGTATTTTACCAGAATGCTAAGAAGTACATTGGCACAT  792

seq1  TTATCATAATTCATATATTAACCTATTAAATATTCCAGTTCATATAATGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAATTCATATATTAACCTATTAAATATTCCAGTTCATATAATGT  842

seq1  TCTCTGTTTCAGGGTTGGTTTATATGTCAGTGTCCTCTAATAGTTTGCTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTCAGGGTTGGTTTATATGTCAGTGTCCTCTAATAGTTTGCTC  892

seq1  CCAGTTATAACTGTGGCATAAAAATGGACAATGTAGATCTCACAGGGGTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATAACTGTGGCATAAAAATGGACAATGTAGATCTCACAGGGGTC  942

seq1  ACTTGTTGTAAGGTGGGCTGAAGCATGTTAACTATGCTGCTAGTGGATAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGTAAGGTGGGCTGAAGCATGTTAACTATGCTGCTAGTGGATAT  992

seq1  GGCTACTTCTTGTCTTAAGGTTCTACCCTTTTCCTAATTAATAAAATCTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTCTTGTCTTAAGGTTCTACCCTTTTCCTAATTAATAAAATCTA  1042

seq1  TGGTATGGCTCATTGACACCTTATGAATATCCATTTTTGTGAATTATCTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGCTCATTGACACCTTATGAATATCCATTTTTGTGAATTATCTG  1092

seq1  GTCAATTTCAAAATTTCAATGTTTATACTCAAGTAAAGTGATGGCCCTTA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTCAAAATTTCAATGTTTATACTCAAGTAAAGTGATGGCCCTTA  1142

seq1  CTGGAATTC  1146
      |||||||||
seq2  CTGGAATTC  1151