BAC Information

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BAC

Clone NameB6Ng01-263B17
Chromosome19 (Build37)
Map Location 23,974,222 - 24,122,688
singlet/doubletdoublet
Overlap geneApba1, Gm967
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263B17.bB6Ng01-263B17.g
ACCGA067358GA067359
length1,0801,127
definitionB6Ng01-263B17.b B6Ng01-263B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,121,618 - 24,122,688)(23,974,222 - 23,975,357)
sequence
gaattccaggccagcttggtctacatagaccagccgaggatacagagtga
gactctgtctctaagtaaataaatgaaatctattgtagtaaaatataaca
tggaagaccaccctacgcatttcatgtgtgcagttcagtcatctttgaag
aatttatatgattgatcttgagtcttcagaactcttacctcgaaaaactc
caaagtccaaacccattcactgccaggttccacgctctctgttggccaac
cccagtaacaacatttatgtttgaatgtgcctactggaggcacctggtgt
aggtgcaatcacataatatttgtcttttttttatgactggcttatttcat
ttaacattaaggtgattttacgcatgttgtagcacaggtaagtagtctct
cttttcattttttttaaactttgtattaataggatgaattaatgtggttc
tagaaggttccacacattcatatagtgttcacggatgaaagcattttctg
ttttcagagataaataatactccattgtgggtagacaaagatcgagttat
ccttatcaaaaatgcttagaaccagagtttcagatcttgggtttttgtga
attttggaatatctgcacatgtatactgagatactctatagattggtcct
aagtctaaacagaaattcgttcatggttcatatatactgcacatagccta
attgtaactcttatataatactttaataagtgatcttttggatgaaatga
attttcattgtgcagatatatttcttttgggggcatgtcagagactcagt
tttggatttagattttaaattttatgtctttggctccaagaccctacact
tattcccagttttctccccactcacaagcacccagtatcttccatctctg
ggctactgtgaagacttctgtcaatatggtaggtaaggactgatttggag
actcccgtttttttagtttctttgcgagaatatgcctagtggaattgctg
gatctccagaggatttctattttttaatcctcttggagggactgtgactt
tggagctttcgcactgagaggatcgtatct
gaattctctctggaaatgtgccataaggatcatatgtgtggcatcactgt
atggcatgttggctccttccggaagttagggctcactatttagggtgggg
tgggtcactggcacactgagttaatatacttgacctcagtgcttctcgct
caccttctctgctctgggttttccctttgctgtcttccaacaggcaaatc
cacaccatgccactcatcctgggccctcccttcagtttccctggttccca
gcttctgcattaggcagcaccccaccagccctttttatccaggactgctc
tagctacatcaaactagcctactagtcagtgggaacggagcatgcaccac
ctgctccaggtcacaattactttatattggcagcctgttccctcccagag
accaatgcacaaaataatttgaggcaggaggttgtttcaaccctgacatt
gctcagttagtcagaaaccagcctcctccttgctgaaagagaggcattct
caacactgtgggaagtaaaggcccaaggttagtacctgccctgatcaaca
cctgtaagctggtggaaaaaagcattgggcgatgccccggcttcacctgg
gtcttagatgtcttgatgctaccccctctctatcctgaattcagcatacg
gcccacaaggattctgatttttcttttaacggttgctaggagactgtcca
ccaaggtcagatgcacatgttaattaattaagactcattagcagcatctt
gccctgttgacctggctgctgtgttgtcaagcctccaaggacaagtaaaa
agaatcggaccactgccaagaattctatttctgtgcgggattcccgtgag
gtgctctgaaatgaggggttccctctgtggatctccgcctgctcatgaag
gttctggcctgccacaatattccaggattggatagcaagggatggagttg
aaatgggatccaaagtcaggcagacagaagtttaggatgaagatgtgtct
tgtcaagtgcctgagtggggtcagttccttgcctggggatgtgagtggta
ctctggaagagaaggacgtctatggtatctcatactgccatacatcatac
ctgaagaggactggtccagtaagcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24121618_24122688
seq2: B6Ng01-263B17.b_44_1123 (reverse)

seq1  AGATACGATCCTCTCAGTGCG-AAGCTCCAAAGTCACAGTCCCT-CAAGA  48
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  AGATACGATCCTCTCAGTGCGAAAGCTCCAAAGTCACAGTCCCTCCAAGA  50

seq1  -GATT-AAAAATAG-AATTCTCTGGAGATCCAGCAATTCCACTAGGCATA  95
       |||| |||||||| ||| |||||||||||||||||||||||||||||||
seq2  GGATTAAAAAATAGAAATCCTCTGGAGATCCAGCAATTCCACTAGGCATA  100

seq1  -TCTCGC-AAGGAACT-AAAAAACGGGAGTCTCC-AATCAGTCCTTACCT  141
       |||||| ||| |||| ||||||||||||||||| |||||||||||||||
seq2  TTCTCGCAAAGAAACTAAAAAAACGGGAGTCTCCAAATCAGTCCTTACCT  150

seq1  ACCATATTGACAGAAGTCTTTCACAGTAGCCCAGAGATGGAAGATACTGG  191
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCATATTGACAGAAGTC-TTCACAGTAGCCCAGAGATGGAAGATACTGG  199

seq1  GTGCTTGTGAGTGGGGAGAAAACTGGGAATAAGTGTAGGGTCTTGGAGCC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTGAGTGGGGAGAAAACTGGGAATAAGTGTAGGGTCTTGGAGCC  249

seq1  AAAGACATAAAATTTAAAATCTAAATCCAAAACTGAGTCTCTGACATGCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATAAAATTTAAAATCTAAATCCAAAACTGAGTCTCTGACATGCC  299

seq1  CCCAAAAGAAATATATCTGCACAATG-AAATTCATTTCATCCAAAAGATC  340
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCAAAAGAAATATATCTGCACAATGAAAATTCATTTCATCCAAAAGATC  349

seq1  ACTTATTAAAGTATTATATAAGAGTTACAATTAGGCTATGTGCAGTATAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTAAAGTATTATATAAGAGTTACAATTAGGCTATGTGCAGTATAT  399

seq1  ATGAACCATGAACGAATTTCTGTTTAGACTTAGGACCAATCTATAGAGTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCATGAACGAATTTCTGTTTAGACTTAGGACCAATCTATAGAGTA  449

seq1  TCTCAGTATACATGTGCAGATATTCCAAAATTCACAAAAACCCAAGATCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTATACATGTGCAGATATTCCAAAATTCACAAAAACCCAAGATCT  499

seq1  GAAACTCTGGTTCTAAGCATTTTTGATAAGGATAACTCGATCTTTGTCTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTGGTTCTAAGCATTTTTGATAAGGATAACTCGATCTTTGTCTA  549

seq1  CCCACAATGGAGTATTATTTATCTCTGAAAACAGAAAATGCTTTCATCCG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATGGAGTATTATTTATCTCTGAAAACAGAAAATGCTTTCATCCG  599

seq1  TGAACACTATATGAATGTGTGGAACCTTCTAGAACCACATTAATTCATCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTATATGAATGTGTGGAACCTTCTAGAACCACATTAATTCATCC  649

seq1  TATTAATACAAAGTTTAAAAAAAATGAAAAGAGAGACTACTTACCTGTGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACAAAGTTTAAAAAAAATGAAAAGAGAGACTACTTACCTGTGC  699

seq1  TACAACATGCGTAAAATCACCTTAATGTTAAATGAAATAAGCCAGTCATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATGCGTAAAATCACCTTAATGTTAAATGAAATAAGCCAGTCATA  749

seq1  AAAAAAAGACAAATATTATGTGATTGCACCTACACCAGGTGCCTCCAGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACAAATATTATGTGATTGCACCTACACCAGGTGCCTCCAGTA  799

seq1  GGCACATTCAAACATAAATGTTGTTACTGGGGTTGGCCAACAGAGAGCGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTCAAACATAAATGTTGTTACTGGGGTTGGCCAACAGAGAGCGT  849

seq1  GGAACCTGGCAGTGAATGGGTTTGGACTTTGGAGTTTTTCGAGGTAAGAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGGCAGTGAATGGGTTTGGACTTTGGAGTTTTTCGAGGTAAGAG  899

seq1  TTCTGAAGACTCAAGATCAATCATATAAATTCTTCAAAGATGACTGAACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGACTCAAGATCAATCATATAAATTCTTCAAAGATGACTGAACT  949

seq1  GCACACATGAAATGCGTAGGGTGGTCTTCCATGTTATATTTTACTACAAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATGAAATGCGTAGGGTGGTCTTCCATGTTATATTTTACTACAAT  999

seq1  AGATTTCATTTATTTACTTAGAGACAGAGTCTCACTCTGTATCCTCGGCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTTATTTACTTAGAGACAGAGTCTCACTCTGTATCCTCGGCT  1049

seq1  GGTCTATGTAGACCAAGCTGGCCTGGAATTC  1071
      |||||||||||||||||||||||||||||||
seq2  GGTCTATGTAGACCAAGCTGGCCTGGAATTC  1080

seq1: chr19_23974222_23975357
seq2: B6Ng01-263B17.g_69_1195

seq1  GAATTCTCTCTGGAAATGTGCCATAAGGATCATATGTGTGGCATCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGGAAATGTGCCATAAGGATCATATGTGTGGCATCACTGT  50

seq1  ATGGCATGTTGGCTCCTTCCGGAAGTTAGGGCTCACTATTTAGGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGTTGGCTCCTTCCGGAAGTTAGGGCTCACTATTTAGGGTGGGG  100

seq1  TGGGTCACTGGCACACTGAGTTAATATACTTGACCTCAGTGCTTCTCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACTGGCACACTGAGTTAATATACTTGACCTCAGTGCTTCTCGCT  150

seq1  CACCTTCTCTGCTCTGGGTTTTCCCTTTGCTGTCTTCCAACAGGCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTCTGCTCTGGGTTTTCCCTTTGCTGTCTTCCAACAGGCAAATC  200

seq1  CACACCATGCCACTCATCCTGGGCCCTCCCTTCAGTTTCCCTGGTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATGCCACTCATCCTGGGCCCTCCCTTCAGTTTCCCTGGTTCCCA  250

seq1  GCTTCTGCATTAGGCAGCACCCCACCAGCCCTTTTTATCCAGGACTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCATTAGGCAGCACCCCACCAGCCCTTTTTATCCAGGACTGCTC  300

seq1  TAGCTACATCAAACTAGCCTACTAGTCAGTGGGAACGGAGCATGCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACATCAAACTAGCCTACTAGTCAGTGGGAACGGAGCATGCACCAC  350

seq1  CTGCTCCAGGTCACAATTACTTTATATTGGCAGCCTGTTCCCTCCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGGTCACAATTACTTTATATTGGCAGCCTGTTCCCTCCCAGAG  400

seq1  ACCAATGCACAAAATAATTTGAGGCAGGAGGTTGTTTCAACCCTGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCACAAAATAATTTGAGGCAGGAGGTTGTTTCAACCCTGACATT  450

seq1  GCTCAGTTAGTCAGAAACCAGCCTCCTCCTTGCTGAAAGAGAGGCATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTAGTCAGAAACCAGCCTCCTCCTTGCTGAAAGAGAGGCATTCT  500

seq1  CAACACTGTGGGAAGTAAAGGCCCAAGGTTAGTACCTGCCCTGATCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTGGGAAGTAAAGGCCCAAGGTTAGTACCTGCCCTGATCAACA  550

seq1  CCTGTAAGCTGGTGGAAAAAAGCATTGGGCGATGCCCCGGCTTCACCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCTGGTGGAAAAAAGCATTGGGCGATGCCCCGGCTTCACCTGG  600

seq1  GTCTTAGATGTCTTGATGCTACCCCCTCTCTATCCTGAATTCAGCATACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGATGTCTTGATGCTACCCCCTCTCTATCCTGAATTCAGCATACG  650

seq1  GCCCACAAGGATTCTGATTTTTCTTTTAACGGTTGCTAGGAGACTGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAAGGATTCTGATTTTTCTTTTAACGGTTGCTAGGAGACTGTCCA  700

seq1  CCAAGGTCAGATGCACATGTTAATTAATTAAGACTCATTAGCAGCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCAGATGCACATGTTAATTAATTAAGACTCATTAGCAGCATCTT  750

seq1  GCCCTGTTGACCTGGCTGCTGTGTTGTCAAGCCTCCAAGGACAAGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTGACCTGGCTGCTGTGTTGTCAAGCCTCCAAGGACAAGTAAAA  800

seq1  AGAATCGGACCACTGCCAAGAATTCTATTTCTGTGCGGGATTCCCGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGGACCACTGCCAAGAATTCTATTTCTGTGCGGGATTCCCGTGAG  850

seq1  GTGCTCTGAAATGAGGGGTTCCCTCTGTGGATCTCCGCCTGCTCATG-AG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGCTCTGAAATGAGGGGTTCCCTCTGTGGATCTCCGCCTGCTCATGAAG  900

seq1  GTTCTGGCCTGCCACAATATTTCCAGGATTGGATAGCAAGGGATGGAGTT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTCTGGCCTGCCACAATA-TTCCAGGATTGGATAGCAAGGGATGGAGTT  949

seq1  GAAATGGGATCCAAAGTCAGGCAGACAG-AGTTTAGGATGAAGATGTGTT  998
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAAATGGGATCCAAAGTCAGGCAGACAGAAGTTTAGGATGAAGATGTGTC  999

seq1  CTGTC-AGTGCCTGAGTTGGGGTCAGTTCCTTG-CTGGGGATGTGAGGTG  1046
       |||| |||||||||| |||||||||||||||| |||||||||||| |||
seq2  TTGTCAAGTGCCTGAG-TGGGGTCAGTTCCTTGCCTGGGGATGTGA-GTG  1047

seq1  GTACTCTTGGGAAGAGAAAGGACGGCCTTATGGTATCTCCAATACTG-CA  1095
      |||||||  ||||||| ||||||| |  |||||||||||  |||||| ||
seq2  GTACTCT--GGAAGAG-AAGGACGTC--TATGGTATCTC--ATACTGCCA  1090

seq1  TACATTCATACCTGAAGAGGACTGGTCCCCAAGTAAGCACC  1136
      |||| |||||||||||||||||||||||   ||||||||||
seq2  TACA-TCATACCTGAAGAGGACTGGTCC---AGTAAGCACC  1127