BAC Information

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BAC

Clone NameB6Ng01-269M07
Chromosome19 (Build37)
Map Location 18,947,655 - 19,065,330
singlet/doubletdoublet
Overlap geneTrpm6, Rorb
Upstream genePcsk5, Eef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269M07.bB6Ng01-269M07.g
ACCGA072277GA072278
length1,1581,089
definitionB6Ng01-269M07.b B6Ng01-269M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,064,175 - 19,065,330)(18,947,655 - 18,948,742)
sequence
gaattctttgtcttacaaaaaaaaattgtgtctgtagtgtatttaatttt
gaaaaagttaacatgttaccctaaagccaaggattatattcattgtataa
agcaataacaaaagatggcgatgcttcgctcttatttgtcttgtgtattt
acgagtggaatgctatagaagtgtatgcaagtgtcaactttatgtatgaa
gcattttgaaggatattttgcataattattttaaattgggagaggaaata
gcagatcttcttagtgtgaataattttaacaactctttagaggactatca
aacacaggaattcctgaattctaaataacttcccatgaggacaaaactgt
ccttctaagacattctacattcaggtgtctgtaaaacgccccatgaaagc
acatgtgtcccggtcccacaccacatcatactccacaaatatcttcattg
ctgttccaaggccaaggctcacatctagctctcatgcatgctagacaagc
gctctctctcaccccaccccacctggcaacatccttgtccctactgtctc
catctctatcagcttatcactttgccttgcttccaaggtgaggcagatag
agatcttccaattcttcatcagcttcggtcttccttacttttcagcattt
actcccacgtctgcctctgaagcatttttgttcatgtttctgggccacct
tttttcccggagctgatacctctttctgccattgcctaacacccgtgtca
ggagtaacttttcgttgatctgcatttttcttctggttagcctcccaagc
gataaggatctcccttcacgtctcacgtagcttgtgaagtggtttacact
gtgcaagcactctaacacagggttacatcccagccttgtcctaaccactt
atttgctctttgttttattcattccttgtggcaaacaagatcaagtgaaa
actccccctgcctaactccagtggctccttaagtcttgtgtcacactttg
gtgtgtccacatgacccaaattttccgtaagctaactactctgtatatta
tcagcctcagtcatacctagacctcctaacctatttcattcatgacgcta
gcccttctctctttagccaagcgaattccatacatttataaaatggaaac
tgtcttcc

gaattctcctctgtggtgaataatggatctgtggattcctgcctcctcag
tctaggctcctatgactgactcctctagctcagcagtaatctattatttt
gactctaactgccagctgtagagagtctctagcgaggaatactgtaactt
gcacagactctgatctgttaggctatgcctcttggcaggaaaatgcagat
cactcgcttctaattaaaattagtgttccatcctctctgggaaaaagaag
gcaaactccacaaaaccaacagtagatgtccccacagaccactgtgcact
gagtttgcttcggaaaaaggaaactagagaatgtggaacatagattaaaa
accatttataagaaagaatcatacattatttgaattagtgtctcatttgt
tattgggagagaaaagagatagccccttcatagaccatgttatataacct
catataaaagttttctaagactaagatatccttttgatttaaggtgcact
ttatatttaaaactattatatataatagtttttgctagtgggaaaaaata
aaggatgcttgaaatgaaatattctggaattcatgtgtattcttgtgtgt
gtggctttctgtaggtttaattgttgatacagtcctaaagtagtcaatct
gtttttgtttgcagccattgaaaggaataatttaatgagactgtctcaga
ccataccgtttacaccaatccagctgttcagtgagtaacatctccctcct
ctcgaggctaggcaagggtagactgaatgtcagcgtgcaacagaaaagac
accatgtgcctcgtttgactcacaaattttattttgtccacgttgtagat
taaggagattcacttcccaaagtagagattgttaactactgtgggcagca
tttagggtcagaagctgagcctgtggggctgggacctccatggggtcagc
ggttgggaagcaagcgttgatcctgcaccttggcattcaatgatttgagg
ccggaccaccacgcatcggaagaaagacaaaccacctttattatatgaac
acaggagatgccacgcatgtcagtatgctggaggctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19064175_19065330
seq2: B6Ng01-269M07.b_47_1204 (reverse)

seq1  GGAAGACAGTT--CATTTTATAAAATGTATGGGATTTGGTTTGGCTAA--  46
      |||||||||||  |||||||| |||||||| ||| || | ||||||||  
seq2  GGAAGACAGTTTCCATTTTAT-AAATGTAT-GGAATTCGCTTGGCTAAAG  48

seq1  AGAGAAAGGCTAGCGTCATTGAATGAAAATAGGTTA-GAGGTCTA-GTAT  94
      |||||| ||||||||||| |||||| |||||||||| |||||||| ||||
seq2  AGAGAAGGGCTAGCGTCA-TGAATG-AAATAGGTTAGGAGGTCTAGGTAT  96

seq1  GACTGAGGCTGATAATTATACAGAGTAGTTAGCTTTACGGAAAATTTGGG  144
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  GACTGAGGCTGATAA-TATACAGAGTAGTTAGC-TTACGGAAAATTTGGG  144

seq1  TCATGTGGACACACCAAAGTGTGACACAAGACTT-AGGAGCCACTGGAGT  193
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCATGTGGACACACCAAAGTGTGACACAAGACTTAAGGAGCCACTGGAGT  194

seq1  TAGGCA-GGGGAGTTTTCACTTGATCTTGTTTGCCACAAGGAATGAATAA  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGGGGAGTTTTCACTTGATCTTGTTTGCCACAAGGAATGAATAA  244

seq1  AACAAAGAGCAAATAAGTGGTTAGGACAAGGCTGGGATGTAACCCTGTGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGCAAATAAGTGGTTAGGACAAGGCTGGGATGTAACCCTGTGT  294

seq1  TAGAGTGCTTGCACAGTGTAAACCACTTCACAAGCTACGTGAGACGTGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGCTTGCACAGTGTAAACCACTTCACAAGCTACGTGAGACGTGAA  344

seq1  GGGAGATCCTTATCGCTTGGGAGGCTAACCAGAAGAAAAATGCAGATCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATCCTTATCGCTTGGGAGGCTAACCAGAAGAAAAATGCAGATCAA  394

seq1  CGAAAAGTTACTCCTGACACGGGTGTTAGGCAATGGCAGAAAGAGGTATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGTTACTCCTGACACGGGTGTTAGGCAATGGCAGAAAGAGGTATC  444

seq1  AGCTCCGGGAAAAAAGGTGGCCCAGAAACATGAACAAAAATGCTTCAGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGGAAAAAAGGTGGCCCAGAAACATGAACAAAAATGCTTCAGAG  494

seq1  GCAGACGTGGGAGTAAATGCTGAAAAGTAAGGAAGACCGAAGCTGATGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGTGGGAGTAAATGCTGAAAAGTAAGGAAGACCGAAGCTGATGAA  544

seq1  GAATTGGAAGATCTCTATCTGCCTCACCTTGGAAGCAAGGCAAAGTGATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAAGATCTCTATCTGCCTCACCTTGGAAGCAAGGCAAAGTGATA  594

seq1  AGCTGATAGAGATGGAGACAGTAGGGACAAGGATGTTGCCAGGTGGGGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATAGAGATGGAGACAGTAGGGACAAGGATGTTGCCAGGTGGGGTG  644

seq1  GGGTGAGAGAGAGCGCTTGTCTAGCATGCATGAGAGCTAGATGTGAGCCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAGAGAGCGCTTGTCTAGCATGCATGAGAGCTAGATGTGAGCCT  694

seq1  TGGCCTTGGAACAGCAATGAAGATATTTGTGGAGTATGATGTGGTGTGGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGGAACAGCAATGAAGATATTTGTGGAGTATGATGTGGTGTGGG  744

seq1  ACCGGGACACATGTGCTTTCATGGGGCGTTTTACAGACACCTGAATGTAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGACACATGTGCTTTCATGGGGCGTTTTACAGACACCTGAATGTAG  794

seq1  AATGTCTTAGAAGGACAGTTTTGTCCTCATGGGAAGTTATTTAGAATTCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAGAAGGACAGTTTTGTCCTCATGGGAAGTTATTTAGAATTCA  844

seq1  GGAATTCCTGTGTTTGATAGTCCTCTAAAGAGTTGTTAAAATTATTCACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTGTGTTTGATAGTCCTCTAAAGAGTTGTTAAAATTATTCACA  894

seq1  CTAAGAAGATCTGCTATTTCCTCTCCCAATTTAAAATAATTATGCAAAAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGATCTGCTATTTCCTCTCCCAATTTAAAATAATTATGCAAAAT  944

seq1  ATCCTTCAAAATGCTTCATACATAAAGTTGACACTTGCATACACTTCTAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAAAATGCTTCATACATAAAGTTGACACTTGCATACACTTCTAT  994

seq1  AGCATTCCACTCGTAAATACACAAGACAAATAAGAGCGAAGCATCGCCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCACTCGTAAATACACAAGACAAATAAGAGCGAAGCATCGCCAT  1044

seq1  CTTTTGTTATTGCTTTATACAATGAATATAATCCTTGGCTTTAGGGTAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTATTGCTTTATACAATGAATATAATCCTTGGCTTTAGGGTAAC  1094

seq1  ATGTTAACTTTTTCAAAATTAAATACACTACAGACACAATTTTTTTTTGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACTTTTTCAAAATTAAATACACTACAGACACAATTTTTTTTTGT  1144

seq1  AAGACAAAGAATTC  1156
      ||||||||||||||
seq2  AAGACAAAGAATTC  1158


seq1: chr19_18947655_18948742
seq2: B6Ng01-269M07.g_69_1157

seq1  GAATTCTCCTCTGTGGTGAATAATGGATCTGTGGATTCCTGCCTCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTGTGGTGAATAATGGATCTGTGGATTCCTGCCTCCTCAG  50

seq1  TCTAGGCTCCTATGACTGACTCCTCTAGCTCAGCAGTAATCTATTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTCCTATGACTGACTCCTCTAGCTCAGCAGTAATCTATTATTTT  100

seq1  GACTCTAACTGCCAGCTGTAGAGAGTCTCTAGCGAGGAATACTGTAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAACTGCCAGCTGTAGAGAGTCTCTAGCGAGGAATACTGTAACTT  150

seq1  GCACAGACTCTGATCTGTTAGGCTATGCCTCTTGGCAGGAAAATGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTCTGATCTGTTAGGCTATGCCTCTTGGCAGGAAAATGCAGAT  200

seq1  CACTCGCTTCTAATTAAAATTAGTGTTCCATCCTCTCTGGGAAAAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTTCTAATTAAAATTAGTGTTCCATCCTCTCTGGGAAAAAGAAG  250

seq1  GCAAACTCCACAAAACCAACAGTAGATGTCCCCACAGACCACTGTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCCACAAAACCAACAGTAGATGTCCCCACAGACCACTGTGCACT  300

seq1  GAGTTTGCTTCGGAAAAAGGAAACTAGAGAATGTGGAACATAGATTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCTTCGGAAAAAGGAAACTAGAGAATGTGGAACATAGATTAAAA  350

seq1  ACCATTTATAAGAAAGAATCATACATTATTTGAATTAGTGTCTCATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTATAAGAAAGAATCATACATTATTTGAATTAGTGTCTCATTTGT  400

seq1  TATTGGGAGAGAAAAGAGATAGCCCCTTCATAGACCATGTTATATAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGAGAGAAAAGAGATAGCCCCTTCATAGACCATGTTATATAACCT  450

seq1  CATATAAAAGTTTTCTAAGACTAAGATATCCTTTTGATTTAAGGTGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAAGTTTTCTAAGACTAAGATATCCTTTTGATTTAAGGTGCACT  500

seq1  TTATATTTAAAACTATTATATATAATAGTTTTTGCTAGTGGGAAAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTAAAACTATTATATATAATAGTTTTTGCTAGTGGGAAAAAATA  550

seq1  AAGGATGCTTGAAATGAAATATTCTGGAATTCATGTGTATTCTTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGCTTGAAATGAAATATTCTGGAATTCATGTGTATTCTTGTGTGT  600

seq1  GTGGCTTTCTGTAGGTTTAATTGTTGATACAGTCCTAAAGTAGTCAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCTGTAGGTTTAATTGTTGATACAGTCCTAAAGTAGTCAATCT  650

seq1  GTTTTTGTTTGCAGCCATTGAAAGGAATAATTTAATGAGACTGTCTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTGCAGCCATTGAAAGGAATAATTTAATGAGACTGTCTCAGA  700

seq1  CCATACCGTTTACACCAATCCAGCTGTTCAGTGAGTAACATCTCCCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCGTTTACACCAATCCAGCTGTTCAGTGAGTAACATCTCCCTCCT  750

seq1  CTCGAGGCTAGGCAAGGGTAGACTGAATGTCAGCGTGCAACAGAAAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGCTAGGCAAGGGTAGACTGAATGTCAGCGTGCAACAGAAAAGAC  800

seq1  ACCATGTGCCTCGTTTGACTCACAAATTTTATTTTGTCCACGTTGTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGCCTCGTTTGACTCACAAATTTTATTTTGTCCACGTTGTAGAT  850

seq1  TAAGGAGATTCACTTCCCAAAGTAGAGATTGTTAACTACTGTGGGCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGATTCACTTCCCAAAGTAGAGATTGTTAACTACTGTGGGCAGCA  900

seq1  TTTAGGGTCAGAAGCTGAGCCTGTGGGGCTGGGACCTCCAT-GGGTCAGC  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTAGGGTCAGAAGCTGAGCCTGTGGGGCTGGGACCTCCATGGGGTCAGC  950

seq1  GGTTGGGAAGCAAGCG-TGATCCTGCACC-TGGCATTCAATGATTTGAGG  997
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  GGTTGGGAAGCAAGCGTTGATCCTGCACCTTGGCATTCAATGATTTGAGG  1000

seq1  CCGGAC--ACACGCATCGGGAAGAAAAGAACAAACCAACCTTATATAATG  1045
      ||||||   |||||||| ||||||||   |||||||| | ||||   |||
seq2  CCGGACCACCACGCATC-GGAAGAAA--GACAAACCACCTTTATTATATG  1047

seq1  AACACAGAAGAAAGCACGGCATGTCAGTATGCTGAAAGCTGAC  1088
      ||||||| |||   ||| |||||||||||||||| | ||||||
seq2  AACACAGGAGATGCCAC-GCATGTCAGTATGCTGGAGGCTGAC  1089


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