BAC Information

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BAC

Clone NameB6Ng01-273D05
Chromosome19 (Build37)
Map Location 26,118,796 - 26,224,563
singlet/doubletdoublet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273D05.bB6Ng01-273D05.g
ACCGA074833GA074834
length1,1531,111
definitionB6Ng01-273D05.b B6Ng01-273D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,223,408 - 26,224,563)(26,118,796 - 26,119,910)
sequence
gaattccaggggcagccctcactctcacacagtgcaccatagtaacactg
ttgctcttagtaaagtcctgatatagcagtgctagtggagagggatggtt
ctagtctatgccaatactatataaaaaattaagagtccaggaaatttttg
ctacagaggtttctcgagcaagtcttattttaatccaatgtctatattga
gcagaattaaagtctgctgaagatctcaatgttccctatgttaatcatat
aactaattctatgtagttacattcaaacaattccaactgttatttgagga
gaatatacatccccttgcctacctgtgctcagttcatgcagtgtgggcag
atactttagcaagaaccaggtagtagtttccaacagtaacattttcattg
tattctaccagatagcttcatttttcttgcatacatcctatgagatatga
agatgtttatttttaaaatactaaatggttttactgtgtccttgtggtgt
aatttattaaggtatggtattatataacatgccgtagatatttcaaatgt
gcacttgggagagacaccaaagaaaccatcactgtagtaaaggtagcgaa
cacttccattgagcaacagaaagtgttcccttgggccctgattcactttg
tcaagtctactctaatcccgggagacactgatttgttttcatcagcaggg
ctgagttcacattttctagactcttacgtaaatggaattttcacaagcat
ttcattttaggtgggtaggcttgtcttttttttttttctctgaagagaat
gtatggtgtgtctatgtttttttcccatataactctaattcttttaaata
tcttttaactatggagaactgtattgtttagatatactctaaatatgttt
tttatgtttatgccctgctgacaaacaattgctctcaagctaaagctata
gagactcatagatctttgtgtcttttgaatatacataggcattactaaag
agaagtgagagcctagggtcagatttatgattgatatagaggggggcata
ttttttattttctgacggaatatcctagacttttttaccatttgctgtat
gttttatgtactcatacaatgtttctctagttcaggatctcccatttttt
gac

gaattcagcactggcctggccagtgggggatctgtatgtctgggacttct
tcaagcattatcaccccggcactactgtgggatgctcttcaggaagcctc
ccttgttgtccacatgctcaggaataggagagggagaactggatagaaat
agtggctgtggctgaagaaaggcttcgtgttgggcctggaaagcactgag
agaccttgaggaagcttctcttctcttctgagtacagtgacagcgaaaac
aggcagctggaactattgtaacatgaatacccagttccctttcgtgagcc
taatttttaataataaaacacatcttggtggggagtgtggtctgtattac
cattagcatttttcaggtaaccagttggctagaaatgcattctggggtca
ggctatagaatcaatagccccaaacaaatttcattactgtatttgtaatt
aattttgtttgaggggggaaggtaacaaagaaggtgaacgcagacttgca
tagcgtttttgcttttgattagatttgcatttgactttatttcttaagga
cttttcaaatgatggaacaaatcattctaataatatgctgtgttggtgat
atgaatgccatgccaaaatgtaactgttagttaaaatgtgtttagtttaa
aaaactattcctatctgttcatttttcaaactgtgtaattgttagaataa
aatcagagagcacatgcgagtatctaccacaatgaagcccatataattag
tagttcactatgtctaggtaccataaaagacattgctttatatttctaat
acaggcaggatctcaggagagggcaggcattgtgctcttaacatgaaaac
ctttggataagatttgggtgacagtgtctggctatacaggaaactctgga
tgtctggtacaaataaatgcactgtgctgaatttggaggccatgtatcta
agggcccttctaccataagaccgttcgttctcagaaactgctcccactta
tgacctttgatgatgggaaaggccagagccctgctaatccatgactcatt
ctcgtgtttatagaagactgatgaggaatgggtcatatggactgaattgg
ttcatcattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26223408_26224563
seq2: B6Ng01-273D05.b_47_1199 (reverse)

seq1  GTCAAAAAGTGGAGAATCTTGAACTATGAG-AACATTGTTATTGAGTACA  49
      |||||||| |||   ||| ||||||| ||| ||||||||   ||||||||
seq2  GTCAAAAAATGGGAGATCCTGAACTA-GAGAAACATTGT--ATGAGTACA  47

seq1  TAAAAACATTACAGCAAATTGTTAAAAAGTCTAGGATATTCCCTTCAGAA  99
      | |||||| |||||||||| || ||||||||||||||||| || ||||||
seq2  T-AAAACA-TACAGCAAATGGTAAAAAAGTCTAGGATATT-CCGTCAGAA  94

seq1  A--TAAAAATATG-CCCCCTCTATATCATTCATAAATCTTGACCCTAGGC  146
      |   ||||||||| |||||||||||||| ||||||||| |||||||||||
seq2  AATAAAAAATATGCCCCCCTCTATATCAATCATAAATC-TGACCCTAGGC  143

seq1  TCTCACTTCTCTTTAGTAATTGCCTATGTATATTC-AAAGACACAAAGAT  195
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TCTCACTTCTCTTTAGTAA-TGCCTATGTATATTCAAAAGACACAAAGAT  192

seq1  CTATGAGTCTCTATAGCTTTAGCTTGAGAGCAATTGTTTGTCAGCAGGGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTCTCTATAGCTTTAGCTTGAGAGCAATTGTTTGTCAGCAGGGC  242

seq1  ATAAACATAAAAAACATATTTAGAGTATATCTAAACAATACAGTTCTCCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATAAAAAACATATTTAGAGTATATCTAAACAATACAGTTCTCCA  292

seq1  TAGTTAAAAGATATTTAAAAGAATTAGAGTTATATGGGAAAAAAACATAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAAAGATATTTAAAAGAATTAGAGTTATATGGGAAAAAAACATAG  342

seq1  ACACACCATACATTCTCTTCAGAGAAAAAAAAAAAAGACAAGCCTACCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATACATTCTCTTCAGAGAAAAAAAAAAAAGACAAGCCTACCCA  392

seq1  CCTAAAATGAAATGCTTGTGAAAATTCCATTTACGTAAGAGTCTAGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATGAAATGCTTGTGAAAATTCCATTTACGTAAGAGTCTAGAAAA  442

seq1  TGTGAACTCAGCCCTGCTGATGAAAACAAATCAGTGTCTCCCGGGATTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTCAGCCCTGCTGATGAAAACAAATCAGTGTCTCCCGGGATTAG  492

seq1  AGTAGACTTGACAAAGTGAATCAGGGCCCAAGGGAACACTTTCTGTTGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACTTGACAAAGTGAATCAGGGCCCAAGGGAACACTTTCTGTTGCT  542

seq1  CAATGGAAGTGTTCGCTACCTTTACTACAGTGATGGTTTCTTTGGTGTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGTGTTCGCTACCTTTACTACAGTGATGGTTTCTTTGGTGTCT  592

seq1  CTCCCAAGTGCACATTTGAAATATCTACGGCATGTTATATAATACCATAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCACATTTGAAATATCTACGGCATGTTATATAATACCATAC  642

seq1  CTTAATAAATTACACCACAAGGACACAGTAAAACCATTTAGTATTTTAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAAATTACACCACAAGGACACAGTAAAACCATTTAGTATTTTAAA  692

seq1  AATAAACATCTTCATATCTCATAGGATGTATGCAAGAAAAATGAAGCTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATCTTCATATCTCATAGGATGTATGCAAGAAAAATGAAGCTAT  742

seq1  CTGGTAGAATACAATGAAAATGTTACTGTTGGAAACTACTACCTGGTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAATACAATGAAAATGTTACTGTTGGAAACTACTACCTGGTTCT  792

seq1  TGCTAAAGTATCTGCCCACACTGCATGAACTGAGCACAGGTAGGCAAGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGTATCTGCCCACACTGCATGAACTGAGCACAGGTAGGCAAGGG  842

seq1  GATGTATATTCTCCTCAAATAACAGTTGGAATTGTTTGAATGTAACTACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATATTCTCCTCAAATAACAGTTGGAATTGTTTGAATGTAACTACA  892

seq1  TAGAATTAGTTATATGATTAACATAGGGAACATTGAGATCTTCAGCAGAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTAGTTATATGATTAACATAGGGAACATTGAGATCTTCAGCAGAC  942

seq1  TTTAATTCTGCTCAATATAGACATTGGATTAAAATAAGACTTGCTCGAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCTGCTCAATATAGACATTGGATTAAAATAAGACTTGCTCGAGA  992

seq1  AACCTCTGTAGCAAAAATTTCCTGGACTCTTAATTTTTTATATAGTATTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGTAGCAAAAATTTCCTGGACTCTTAATTTTTTATATAGTATTG  1042

seq1  GCATAGACTAGAACCATCCCTCTCCACTAGCACTGCTATATCAGGACTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGACTAGAACCATCCCTCTCCACTAGCACTGCTATATCAGGACTTT  1092

seq1  ACTAAGAGCAACAGTGTTACTATGGTGCACTGTGTGAGAGTGAGGGCTGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGCAACAGTGTTACTATGGTGCACTGTGTGAGAGTGAGGGCTGC  1142

seq1  CCCTGGAATTC  1156
      |||||||||||
seq2  CCCTGGAATTC  1153


seq1: chr19_26118796_26119910
seq2: B6Ng01-273D05.g_68_1178

seq1  GAATTCAGCACTGGCCTGGCCAGTGGGGGATCTGTATGTCTGGGACTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTGGCCTGGCCAGTGGGGGATCTGTATGTCTGGGACTTCT  50

seq1  TCAAGCATTATCACCCCGGCACTACTGTGGGATGCTCTTCAGGAAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATTATCACCCCGGCACTACTGTGGGATGCTCTTCAGGAAGCCTC  100

seq1  CCTTGTTGTCCACATGCTCAGGAATAGGAGAGGGAGAACTGGATAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGTCCACATGCTCAGGAATAGGAGAGGGAGAACTGGATAGAAAT  150

seq1  AGTGGCTGTGGCTGAAGAAAGGCTTCGTGTTGGGCCTGGAAAGCACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGTGGCTGAAGAAAGGCTTCGTGTTGGGCCTGGAAAGCACTGAG  200

seq1  AGACCTTGAGGAAGCTTCTCTTCTCTTCTGAGTACAGTGACAGCGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGAGGAAGCTTCTCTTCTCTTCTGAGTACAGTGACAGCGAAAAC  250

seq1  AGGCAGCTGGAACTATTGTAACATGAATACCCAGTTCCCTTTCGTGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTGGAACTATTGTAACATGAATACCCAGTTCCCTTTCGTGAGCC  300

seq1  TAATTTTTAATAATAAAACACATCTTGGTGGGGAGTGTGGTCTGTATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAATAATAAAACACATCTTGGTGGGGAGTGTGGTCTGTATTAC  350

seq1  CATTAGCATTTTTCAGGTAACCAGTTGGCTAGAAATGCATTCTGGGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCATTTTTCAGGTAACCAGTTGGCTAGAAATGCATTCTGGGGTCA  400

seq1  GGCTATAGAATCAATAGCCCCAAACAAATTTCATTACTGTATTTGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGAATCAATAGCCCCAAACAAATTTCATTACTGTATTTGTAATT  450

seq1  AATTTTGTTTGAGGGGGGAAGGTAACAAAGAAGGTGAACGCAGACTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTTGAGGGGGGAAGGTAACAAAGAAGGTGAACGCAGACTTGCA  500

seq1  TAGCGTTTTTGCTTTTGATTAGATTTGCATTTGACTTTATTTCTTAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTTTTTGCTTTTGATTAGATTTGCATTTGACTTTATTTCTTAAGGA  550

seq1  CTTTTCAAATGATGGAACAAATCATTCTAATAATATGCTGTGTTGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATGATGGAACAAATCATTCTAATAATATGCTGTGTTGGTGAT  600

seq1  ATGAATGCCATGCCAAAATGTAACTGTTAGTTAAAATGTGTTTAGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCCATGCCAAAATGTAACTGTTAGTTAAAATGTGTTTAGTTTAA  650

seq1  AAAACTATTCCTATCTGTTCATTTTTCAAACTGTGTAATTGTTAGAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTCCTATCTGTTCATTTTTCAAACTGTGTAATTGTTAGAATAA  700

seq1  AATCAGAGAGCACATGCGAGTATCTACCACAATGAAGCCCATATAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGAGCACATGCGAGTATCTACCACAATGAAGCCCATATAATTAG  750

seq1  TAGTTCACTATGTCTAGGTACCATAAAAGACATTGCTTTATATTTCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCACTATGTCTAGGTACCATAAAAGACATTGCTTTATATTTCTAAT  800

seq1  ACAGGCAGGATCTCAGGAGAGGGCAGGCATTGTGCTCTTAACATGAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGATCTCAGGAGAGGGCAGGCATTGTGCTCTTAACATGAAAAC  850

seq1  CTTT-GATAAGATTTGGGTGACAGTGTCTGGCTATACAGGAAACTCTGGA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATAAGATTTGGGTGACAGTGTCTGGCTATACAGGAAACTCTGGA  900

seq1  TGTCTGGTACAAATAAATGCACTGTGCTGAATTTGGAGGCCATGTATCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTACAAATAAATGCACTGTGCTGAATTTGGAGGCCATGTATCTA  950

seq1  AGGGCCTTTCTACCATAAGACCGTTCGTTCTTCAGAAACTGCTCCCACTT  999
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGCCCTTCTACCATAAGACCGTTCGTTC-TCAGAAACTGCTCCCACTT  999

seq1  ATGACCTTTGATGAT-GGAAAGGCCCAAGAAGCCCTGCTTATTCCATGAC  1048
      ||||||||||||||| |||||||||  || |||||||| || ||||||||
seq2  ATGACCTTTGATGATGGGAAAGGCC--AG-AGCCCTGC-TAATCCATGAC  1045

seq1  TCATTCTCGTGTTTATAGAAGACTTGATGAGGAAT-GGTCATAT-GACTG  1096
      ||||||||||||||||||||||| ||||||||||| |||||||| |||||
seq2  TCATTCTCGTGTTTATAGAAGAC-TGATGAGGAATGGGTCATATGGACTG  1094

seq1  AAATTGGGTCAATCATTCC  1115
       |||||| || ||||||||
seq2  -AATTGGTTC-ATCATTCC  1111


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