BAC Information

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BAC

Clone NameB6Ng01-275L11
Chromosome19 (Build37)
Map Location 17,821,145 - 17,822,335
singlet/doubletsinglet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L11.bB6Ng01-275L11.g
ACCGA076679GA076680
length1,195857
definitionB6Ng01-275L11.b B6Ng01-275L11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggtctatgaaactggtgcttctagatgtttgatgaagagtt
ttcttaaccttacagtcttgacggtcaaactaaacttccttcatagtgtt
aaaattgtccactacctcagccagataagttaaaaccaattctactacat
gggtctgaatctccatggcttttctacctggtaagttttgtcatcttgag
aggatagcttagcaaggttaatatgaagagatgttttcattgaacttgaa
attcaactgattgaaaatatcccttgcttagctatcttctaattgaaact
gctgtgagaaaaagcaaacgtaaactgacccagtatgctttaaaatactt
attccatctgataactgggatacaaataaggtatgctcttacaaccttgt
attcaagataaggctgcacaggtggttgttcacagagacttctggacaac
agcatctcgtcagcagggaacttataaggaatgcaatgtctcagacaatg
cagtggggaaaggcgggatggattggcaatagtcagtctcagaccctcca
ggtgactccactgacagtttatgaaccacagatgcagagagaagccggat
ccttggtgctgcaggtgcagagattggctggaacaccgagctctgcccct
gctcagtaggtgaccttcagcaagttacttaacatttataggttttaata
tcctcatccataaagtagctatgataataatgcctaactcactgtaacac
tggcgataatctactacataagagagttagcaaaagacttggtgtaacgt
ggggaaatcattaaatgcaggcaattattttctctgctacagagtgatag
caagtttgctcattcatatatgcaatttgtatttattcagcatttgccac
acatgcccattagaacaaccccactgcccaagtccactccatactaaaat
agagggcatagctgcctgatgggtgggggcccagactctcaaagattcaa
atctgcaaacaaaactatacccactgcctgagaccagtggctgcattgtc
tgtaagtgactgtcggaagctctgaacagaagagcactaccctcagccct
gtaatgtcatatccaggtctttcctgcctttactgaatcttctaggaaat
atagatccatggtgtaatttatctacatatagtcagtgctatgtg

gaattcatccttcagctattttcaaataagagctgggaattttagagaat
tgtttaacctgaggtcatataagcaaaaggcattctaatttcttggacaa
ttggttttcacatctcctttgtttcttcatggattatatataacatttca
cccagtttttgcttatgttagaagacagtcttaagtgattgacatgtaca
aaattgcctgtgggcttctgatgtttatcatttacccatgttaaaactat
atctcatgatgctgtctctcaaccatccattcatccatacatccatacat
ccatccagcaaactcataattgtccagtagattcaaaccaaatgccaatg
aaacatgatgtttccttgaagatgaagatttggtcatgatctttcttttc
ttttctcttcttttctcttcttttctcttcttttcttctcttctcttctc
ttctcttctcttctcttttctcttcttttcttttcttcttcttttttttt
ttttaagacagggttcctctgtgtagccatggctgttctggaactcactt
tgtagaccaggctggccttgaaatcagaaatctgcctgcctctgtctccc
aagtgttgggattaaagacgtgagccaccaccacctggcactttcgctct
ctctctctctctctctctctctctctctctctctctctgtgttttatggg
cgattttctttatttacattggaaatgttaatcgcctttccaggtaatcc
tctctgaaaacccccctatctgatacccccctctcccaccttttaagaag
gtgttcccccaccaaacacccacctcttgcttccctattcgggcattccc
tacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17821145_17822335
seq2: B6Ng01-275L11.b_44_1238

seq1  GAATTCTCTGGTCTATGAAACTGGTGCTTCTAGATGTTTGATGAAGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTCTATGAAACTGGTGCTTCTAGATGTTTGATGAAGAGTT  50

seq1  TTCTTAACCTTACAGTCTTGACGGTCAAACTAAACTTCCTTCATAGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACCTTACAGTCTTGACGGTCAAACTAAACTTCCTTCATAGTGTT  100

seq1  AAAATTGTCCACTACCTCAGCCAGATAAGTTAAAACCAATTCTACTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTCCACTACCTCAGCCAGATAAGTTAAAACCAATTCTACTACAT  150

seq1  GGGTCTGAATCTCCATGGCTTTTCTACCTGGTAAGTTTTGTCATCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGAATCTCCATGGCTTTTCTACCTGGTAAGTTTTGTCATCTTGAG  200

seq1  AGGATAGCTTAGCAAGGTTAATATGAAGAGATGTTTTCATTGAACTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCTTAGCAAGGTTAATATGAAGAGATGTTTTCATTGAACTTGAA  250

seq1  ATTCAACTGATTGAAAATATCCCTTGCTTAGCTATCTTCTAATTGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTGATTGAAAATATCCCTTGCTTAGCTATCTTCTAATTGAAACT  300

seq1  GCTGTGAGAAAAAGCAAACGTAAACTGACCCAGTATGCTTTAAAATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGAAAAAGCAAACGTAAACTGACCCAGTATGCTTTAAAATACTT  350

seq1  ATTCCATCTGATAACTGGGATACAAATAAGGTATGCTCTTACAACCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTGATAACTGGGATACAAATAAGGTATGCTCTTACAACCTTGT  400

seq1  ATTCAAGATAAGGCTGCACAGGTGGTTGTTCACAGAGACTTCTGGACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGATAAGGCTGCACAGGTGGTTGTTCACAGAGACTTCTGGACAAC  450

seq1  AGCATCTCGTCAGCAGGGAACTTATAAGGAATGCAATGTCTCAGACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCGTCAGCAGGGAACTTATAAGGAATGCAATGTCTCAGACAATG  500

seq1  CAGTGGGGAAAGGCGGGATGGATTGGCAATAGTCAGTCTCAGACCCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGAAAGGCGGGATGGATTGGCAATAGTCAGTCTCAGACCCTCCA  550

seq1  GGTGACTCCACTGACAGTTTATGAACCACAGATGCAGAGAGAAGCCGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCCACTGACAGTTTATGAACCACAGATGCAGAGAGAAGCCGGAT  600

seq1  CCTTGGTGCTGCAGGTGCAGAGATTGGCTGGAACACCGAGCTCTGCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGCTGCAGGTGCAGAGATTGGCTGGAACACCGAGCTCTGCCCCT  650

seq1  GCTCAGTAGGTGACCTTCAGCAAGTTACTTAACATTTATAGGTTTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTAGGTGACCTTCAGCAAGTTACTTAACATTTATAGGTTTTAATA  700

seq1  TCCTCATCCATAAAGTAGCTATGATAATAATGCCTAACTCACTGTAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCCATAAAGTAGCTATGATAATAATGCCTAACTCACTGTAACAC  750

seq1  TGGCGATAATCTACTACATAAGAGAGTTAGCAAAAGACTTGGTGTAACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGATAATCTACTACATAAGAGAGTTAGCAAAAGACTTGGTGTAACGT  800

seq1  GGGGAAATCATTAAATGCAGGCAATTATTTTCTCTGCTACAGAGTGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATCATTAAATGCAGGCAATTATTTTCTCTGCTACAGAGTGATAG  850

seq1  CAAGTTTGCTCATTCATATATGCAATTTGTATTTATTCAGCATTTGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGCTCATTCATATATGCAATTTGTATTTATTCAGCATTTGCCAC  900

seq1  ACATGCCCATTAGAACAACCCCACTGCCCAAGGTCCACTCCATACTAAAA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACATGCCCATTAGAACAACCCCACTGCCCAA-GTCCACTCCATACTAAAA  949

seq1  TAGAGGGCATAGCTGCCTGATGG--TGGGGCCAAGACTCTCAAAGAATCA  998
      |||||||||||||||||||||||   |||||| ||||||||||||| |||
seq2  TAGAGGGCATAGCTGCCTGATGGGTGGGGGCCCAGACTCTCAAAGATTCA  999

seq1  AATCTGCAAACAAAACTATACCCACTGCCTGAGGACCAGTGGCTGCA-TG  1047
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AATCTGCAAACAAAACTATACCCACTGCCTGA-GACCAGTGGCTGCATTG  1048

seq1  TCTGTAAGTGACTGTCGGGAAGCTCTG-ACAGAAGAGCCACTTACCCTCA  1096
      |||||||||||||||| |||||||||| ||||||||| ||| ||||||| 
seq2  TCTGTAAGTGACTGTC-GGAAGCTCTGAACAGAAGAG-CAC-TACCCTC-  1094

seq1  AGCCCTGTTATGTTCATATCAAGTCCTTTTCTG-CTTTACTG-ATCTTCT  1144
      |||||||| ||| ||||||| ||  |||| ||| |||||||| |||||| 
seq2  AGCCCTGTAATG-TCATATCCAGGTCTTTCCTGCCTTTACTGAATCTTC-  1142

seq1  TAGGAAATATAGAT-CAT-GTGT-ATTTATCTAC--ATAGTCAGTGC-AT  1188
      |||||||||||||| ||| |||| ||||||||||  ||||||||||| ||
seq2  TAGGAAATATAGATCCATGGTGTAATTTATCTACATATAGTCAGTGCTAT  1192

seq1  GTG  1191
      |||
seq2  GTG  1195


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