BAC Information

Click to search

BAC

Clone NameB6Ng01-277P19
Chromosome19 (Build37)
Map Location 24,673,071 - 24,805,879
singlet/doubletdoublet
Overlap geneE030010A14Rik, Pgm5
Upstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277P19.bB6Ng01-277P19.g
ACCGA078355GA078356
length1,1131,077
definitionB6Ng01-277P19.b B6Ng01-277P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,673,071 - 24,674,190)(24,804,794 - 24,805,879)
sequence
ggaattctttttagaaacatgattctactctcaaaatgttgatgcagttt
gtggcacaccaactccctgcttccatagacacagctctcaactgacacct
ccttttcctacagtggctcttggggttagtcaccacagaacactttcaac
actccgcacgtcaatgttctgaaactaaccccatggcagcttcttctcag
ttttcaggaaatgcttggttgagtgatatgaattttctcagttaataact
cctccccatagtgccttgaagttaattttttggattagcacacagagtac
tgggcttcatatattcatagccatcttcatctgtatgtggcatcacactc
tcttccccttgttcccctcctcactgccctcctctgcctgattccttttc
tttctccagtaaacgctctttctgcttccttgttacatgtattccattac
catatttctcccccctctcattatccccttctagttttaacagctgccaa
tatataaacatggaaacacgacaaatgcacacagagttttaagtctagat
tcttcagatgaggaaaaatatacacaatttgtccttctgagatttaattt
tttaaagatagggtctccctatgtggtcctggctgccatggaactctcta
tatagactaggtccacgtacctctgcctcctgggagcttaaagacacgtg
ccatcatgcctggctgatgatttttacgagttgtgatttcatgactgcag
gaaaatggataattagtaagaaacattggtaactgaaaaactcatatgca
tgacagaaatatattgcatgccctcttttccttgacactgcagagaactg
cacaaaatgttctattaaaatctttgtttccagaaataaacttttggatg
agcctgagtattccagcttctgtaaggtagattcaagctcttgaattcca
ccagtctccacccaaccccactgatagttaaagtaactccaggaagaaag
taaatgtgtcattatcgcatgacatctgcaagtcactgccattcagtgtt
ctgaccatgagaatgcaagaaattatcaacagaaagtttttgcagcattt
gttatccatagcg
gaattcatatttaattctcttgcctgagtctcttaactgtttcaaataca
aatacacactgctagatctggctcttatatgggttttttcccctcccaga
gtggccacctctaatgggaatcccatgtctgaacacatttgctgacagtg
ttataaggactttcttgttatcttgttcccaaagctgaggaagaaatacc
tggtgtgggaagaagaaaaggatatggtatggttccatgcccctcatttt
tggcaagggttctgatgtttattggccatctttaaaactttgaagttgat
aaaagttgtacaaatattcagggttcccgtctttcagctcactctgaata
ttgtccatgaggcaaaaacgccccaagttaaagcccaactgaaggcaaat
atttgggctcagctgcccctcctttggctccatttacaaatacccattcc
tgccatggtgtgccagctggaactggagacaaatatgtgatgtttggaga
gatgacttctttatattagtgactaagggggaaaaaaaccaaacaaacca
atgaacagatgtttttttaaaagctctgatgcctggcgttgtgccagctg
tgtggtatgcatcatcaaatttcaaactccaaaataaacaagccaagaat
aatttcgatcttttttttttttttttctcctctgattaccaccccagccc
tactattcgattcgaatagcttgtggctaggaagactttttttgaatgga
acaattgtgacatttctttcaagttctccagagattttttatagtgagct
cagttcccttttctccctcttttctgtccctctcgctcccccattgcttc
cccaccccaggctgatcacatagctccagaaaacagcccaagaatgagag
agctaaaggcctgtgccttcttagactcacatctgaagagtgggcaaggc
aggttggaaatcaacaacaggagacaatgcagaagaaaatgtgcagtgtg
acagccaagaaagggaagccactcagttagatggatggttgcaaggctgt
acttccagaagaacagaacaagcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24673071_24674190
seq2: B6Ng01-277P19.b_49_1160

seq1  GAATTCTTTTTAGAAACATGATTCTACTCTCAAAATGTTGATGCAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGAAACATGATTCTACTCTCAAAATGTTGATGCAGTTTG  50

seq1  TGGCACACCAACTCCCTGCTTCCATAGACACAGCTCTCAACTGACACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACCAACTCCCTGCTTCCATAGACACAGCTCTCAACTGACACCTC  100

seq1  CTTTTCCTACAGTGGCTCTTGGGGTTAGTCACCACAGAACACTTTCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTACAGTGGCTCTTGGGGTTAGTCACCACAGAACACTTTCAACA  150

seq1  CTCCGCACGTCAATGTTCTGAAACTAACCCCATGGCAGCTTCTTCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCACGTCAATGTTCTGAAACTAACCCCATGGCAGCTTCTTCTCAGT  200

seq1  TTTCAGGAAATGCTTGGTTGAGTGATATGAATTTTCTCAGTTAATAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAATGCTTGGTTGAGTGATATGAATTTTCTCAGTTAATAACTC  250

seq1  CTCCCCATAGTGCCTTGAAGTTAATTTTTTGGATTAGCACACAGAGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATAGTGCCTTGAAGTTAATTTTTTGGATTAGCACACAGAGTACT  300

seq1  GGGCTTCATATATTCATAGCCATCTTCATCTGTATGTGGCATCACACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATATATTCATAGCCATCTTCATCTGTATGTGGCATCACACTCT  350

seq1  CTTCCCCTTGTTCCCCTCCTCACTGCCCTCCTCTGCCTGATTCCTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTTGTTCCCCTCCTCACTGCCCTCCTCTGCCTGATTCCTTTTCT  400

seq1  TTCTCCAGTAAACGCTCTTTCTGCTTCCTTGTTACATGTATTCCATTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGTAAACGCTCTTTCTGCTTCCTTGTTACATGTATTCCATTACC  450

seq1  ATATTTCTCCCCCCTCTCATTATCCCCTTCTAGTTTTAACAGCTGCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCCCCCCTCTCATTATCCCCTTCTAGTTTTAACAGCTGCCAAT  500

seq1  ATATAAACATGGAAACACGACAAATGCACACAGAGTTTTAAGTCTAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACATGGAAACACGACAAATGCACACAGAGTTTTAAGTCTAGATT  550

seq1  CTTCAGATGAGGAAAAATATACACAATTTGTCCTTCTGAGATTTAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATGAGGAAAAATATACACAATTTGTCCTTCTGAGATTTAATTTT  600

seq1  TTAAAGATAGGGTCTCCCTATGTGGTCCTGGCTGCCATGGAACTCTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATAGGGTCTCCCTATGTGGTCCTGGCTGCCATGGAACTCTCTAT  650

seq1  ATAGACTAGGTCCACGTACCTCTGCCTCCTGGGAGCTTAAAGACACGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTAGGTCCACGTACCTCTGCCTCCTGGGAGCTTAAAGACACGTGC  700

seq1  CATCATGCCTGGCTGATGATTTTTACGAGTTGTGATTTCATGACTGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCTGGCTGATGATTTTTACGAGTTGTGATTTCATGACTGCAGG  750

seq1  AAAATGGATAATTAGTAAGAAACATTGGTAACTGAAAAACTCATATGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATAATTAGTAAGAAACATTGGTAACTGAAAAACTCATATGCAT  800

seq1  GACAGAAATATATTGCATGCCCTCTTTTCCTTGACACTGCAGAGAACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAATATATTGCATGCCCTCTTTTCCTTGACACTGCAGAGAACTGC  850

seq1  ACAAAATGTTCTATTAAAATCTTTGTTTCCAGAAATAAACTTTTGGATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTTCTATTAAAATCTTTGTTTCCAGAAATAAACTTTTGGATGA  900

seq1  GCCTGAGTATTCCAGCTTCTGTAAGGTAGATTCAAGCTCTTGAATTCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTATTCCAGCTTCTGTAAGGTAGATTCAAGCTCTTGAATTCCAC  950

seq1  CAGTCTCCACCCAACCCCACTGATAGTTAAAGTTACTCCAGGAAGAAAGT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGTCTCCACCCAACCCCACTGATAGTTAAAGTAACTCCAGGAAGAAAGT  1000

seq1  AAATGTGTCATTATCGCATGACATTCTGCAAAGGTCACTGCCATTTCAGG  1050
      ||||||||||||||||||||||| |||||||  |||||||||| |||| |
seq2  AAATGTGTCATTATCGCATGACA-TCTGCAA--GTCACTGCCA-TTCA-G  1045

seq1  TGTTCTGACCCATGAGAAATGCAAGAAATATTCCAACAGAAAGTTTTTGC  1100
      |||||||| ||||||| |||||||||||| |  |||||||||||||||||
seq2  TGTTCTGA-CCATGAG-AATGCAAGAAAT-TATCAACAGAAAGTTTTTGC  1092

seq1  AGCATTTGTTATCAATAGCG  1120
      ||||||||||||| ||||||
seq2  AGCATTTGTTATCCATAGCG  1112

seq1: chr19_24804794_24805879
seq2: B6Ng01-277P19.g_66_1142 (reverse)

seq1  AGCTGCCTTGTCCTGTTCTTCCTGAAAGTGCCAGCCTTGCACACCCATCC  50
      ||||| ||||| |||||||| ||| ||||  ||||||||  || ||||||
seq2  AGCTG-CTTGTTCTGTTCTT-CTGGAAGT-ACAGCCTTG--CAACCATCC  45

seq1  ATCTACCTGGGTGGCTTCCCTTTCCTTGCCTGTCACCACTGCACATTTTT  100
      ||||| ||| ||||||||||||| |||| |||||| ||||||||| ||||
seq2  ATCTAACTGAGTGGCTTCCCTTT-CTTGGCTGTCA-CACTGCACA-TTTT  92

seq1  CTTCTGCATTGTCTCCCTGTTTGTTGATTTCCAACCTGCCTTTGCCCACT  150
      |||||||||||||| |||| |||||||||||||||||||| |||||||||
seq2  CTTCTGCATTGTCT-CCTG-TTGTTGATTTCCAACCTGCC-TTGCCCACT  139

seq1  CTTCAGAATGTGAGTCTAAGAAGGCACAGGCC-TTAGCTCTCTCATTCTT  199
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTCAG-ATGTGAGTCTAAGAAGGCACAGGCCTTTAGCTCTCTCATTCTT  188

seq1  -GGCTG-TTTCTGGAGCTATGTGATCAGCCTGGGGTGGGGAAGCAATGGG  247
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTTTCTGGAGCTATGTGATCAGCCTGGGGTGGGGAAGCAATGGG  238

seq1  GGAGCGAGAGGGACAGAAAAGAGGGAGAAAAGGGAACTGAGCTCACTATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGAGAGGGACAGAAAAGAGGGAGAAAAGGGAACTGAGCTCACTATA  288

seq1  AAAAATCTCTGGAGAACTTGAAAGAAATGTCACAATTGTTCCATTCAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCTGGAGAACTTGAAAGAAATGTCACAATTGTTCCATTCAAAA  338

seq1  AAAGTCTTCCTAGCCACAAGCTATTCGAATCGAATAGTAGGGCTGGGGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCCTAGCCACAAGCTATTCGAATCGAATAGTAGGGCTGGGGTG  388

seq1  GTAATCAGAGGAGAAAAAAAAAAAAAAAAGATCGAAATTATTCTTGGCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAGAGGAGAAAAAAAAAAAAAAAAGATCGAAATTATTCTTGGCTT  438

seq1  GTTTATTTTGGAGTTTGAAATTTGATGATGCATACCACACAGCTGGCACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTGGAGTTTGAAATTTGATGATGCATACCACACAGCTGGCACA  488

seq1  ACGCCAGGCATCAGAGCTTTTAAAAAAACATCTGTTCATTGGTTTGTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGGCATCAGAGCTTTTAAAAAAACATCTGTTCATTGGTTTGTTTG  538

seq1  GTTTTTTTCCCCCTTAGTCACTAATATAAAGAAGTCATCTCTCCAAACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTCCCCCTTAGTCACTAATATAAAGAAGTCATCTCTCCAAACAT  588

seq1  CACATATTTGTCTCCAGTTCCAGCTGGCACACCATGGCAGGAATGGGTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTGTCTCCAGTTCCAGCTGGCACACCATGGCAGGAATGGGTAT  638

seq1  TTGTAAATGGAGCCAAAGGAGGGGCAGCTGAGCCCAAATATTTGCCTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGGAGCCAAAGGAGGGGCAGCTGAGCCCAAATATTTGCCTTCA  688

seq1  GTTGGGCTTTAACTTGGGGCGTTTTTGCCTCATGGACAATATTCAGAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTTAACTTGGGGCGTTTTTGCCTCATGGACAATATTCAGAGTG  738

seq1  AGCTGAAAGACGGGAACCCTGAATATTTGTACAACTTTTATCAACTTCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGACGGGAACCCTGAATATTTGTACAACTTTTATCAACTTCAA  788

seq1  AGTTTTAAAGATGGCCAATAAACATCAGAACCCTTGCCAAAAATGAGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAGATGGCCAATAAACATCAGAACCCTTGCCAAAAATGAGGGG  838

seq1  CATGGAACCATACCATATCCTTTTCTTCTTCCCACACCAGGTATTTCTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACCATACCATATCCTTTTCTTCTTCCCACACCAGGTATTTCTTC  888

seq1  CTCAGCTTTGGGAACAAGATAACAAGAAAGTCCTTATAACACTGTCAGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTTGGGAACAAGATAACAAGAAAGTCCTTATAACACTGTCAGCA  938

seq1  AATGTGTTCAGACATGGGATTCCCATTAGAGGTGGCCACTCTGGGAGGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTCAGACATGGGATTCCCATTAGAGGTGGCCACTCTGGGAGGGG  988

seq1  AAAAAACCCATATAAGAGCCAGATCTAGCAGTGTGTATTTGTATTTGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCATATAAGAGCCAGATCTAGCAGTGTGTATTTGTATTTGAAA  1038

seq1  CAGTTAAGAGACTCAGGCAAGAGAATTAAATATGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAGACTCAGGCAAGAGAATTAAATATGAATTC  1077