BAC Information

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BAC

Clone NameB6Ng01-282L02
Chromosome19 (Build37)
Map Location 48,502,502 - 48,634,753
singlet/doubletdoublet
Overlap geneSorcs3
Upstream geneSh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282L02.bB6Ng01-282L02.g
ACCGA081844GA081845
length1,095938
definitionB6Ng01-282L02.b B6Ng01-282L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,633,656 - 48,634,753)(48,502,502 - 48,503,422)
sequence
gaattctctaaaatcacgacttccggcttcctgaaaacaagcagctgcct
taaaccagaagcccagctgtcttaaaccggaagcccagaaaccagatcta
gggtgcagctggtcagctctagagctgaggtacagatatcccctatttgt
tgtgtatgagttaattaaggaaagaaaatgttgagagcaaattaaaccca
ggagcgacaacacaacagaaaacatcttccaacaagaatatataaaatca
cccccaaacctagaaacattaatgaaaacaggagtttcttgactaaataa
tcatttacattctattcttctcttctccttgctagtttttatagccgcac
aagcgtaggtataacaagaaaaagaaacccaaaaggactctacagagggt
cacaggaagaattgaaatgccaacagcgtcatagctcatgcattgtcatg
acaccccctcacccaatctgtttatcttcccacaggaaggagaagaaatt
tgataatctgagtgttgctgtcttcagctctgtaattagagaacatggga
cctgatgaattgcaaatggagtctgaaccctagcttgtgacttaatgagc
aagatgggccagtcacagacgtccacactccatattaatcaaagactgat
gatgcttccctgggaagttgtcctatgtgatgtatgatcctattaaccaa
ctattacccggtttgcctcctccacctgagacccctggatcctctagctc
tgagtctcaacaaccaggcattaagaaaagcaagagttcacaactctgaa
gatggctttagtcaagagtaaaggacatgccccagtcttagaaaagttaa
gaagaggatggaaggcaaaataagtacccagtaggagaaggcaatctgag
ttggcacaaccaataaggattccagactcagaaattgttctctgcccatc
tgtgaggtcttcaaattctatagtactgggctactctaagagagataacc
caaacaaaatggtctacatctatatactcttccatctgggtacatagcat
acttgtaagcttttctgtagttcttttactgtacaagaaagaaaa
gaattccttttcaaatttgtgaactgagactgaagaatacgagagagaga
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagtttttagaaagatatcaattctgcccattctggat
acctgctgaggtgaaagaagggagatcccaaaatgatacacaggcttgga
atgggggctgtacttgtttaggcctcttaaaccccactgagagggcatga
gtttttacccccttgcaactttttagagtcctgagtgggacatagttaac
actttaggtgaggtggcagtcctctatttccttttcttacaatgtccatg
gatgctaaatataactcagcgcccatcagcttggctggatgaagcacaca
gactttacagcctgtcaaccaaatcctagcccaaaactctgtgcccaaga
caataatattagtgtagttgtaactgtctcatgaagcttttaatggctgt
cccttggtatctataagggattagaccaagaaccttctaaagatctctaa
agtcatcaacaaagccaccattaccatctctctagtgacccttgactgtt
ggctgttgttcttctgtctctagggttttggctcattgtcagtaactgga
ggggttctcgcagtgaggtgcccctgagagtctgtctgctaggatctttg
tggaagggaaggaaataagagggtttggtgttagattgaatgtgcatcat
gataacctgacttcagtggatgataatcctcaaactccattctgggttcc
atccttcagattcgtaagactctgggttctggaagtgagaacaatgcttg
ttatatacttctgcccctcttcctctttctttctcctctagaaagaagga
tggaaatacatgaaagaaggatgaacgaagtaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48633656_48634753
seq2: B6Ng01-282L02.b_45_1139 (reverse)

seq1  TTTTCTTTC-TGTACAGTAAAAGAAACTACAG-AAAGCTTACAAGTATGC  48
      ||||||||| ||||||||||||| |||||||| |||||||||||||||||
seq2  TTTTCTTTCTTGTACAGTAAAAG-AACTACAGAAAAGCTTACAAGTATGC  49

seq1  TATGTAACCAGATGGGAGGAGGTATATAGATGTAAGAACCATTTTGTTT-  97
      |||||| |||||||| ||   |||||||||||||   |||||||||||| 
seq2  TATGTACCCAGATGGAAG--AGTATATAGATGTA--GACCATTTTGTTTG  95

seq1  GGTTATCTCTCTTAGAGTAGCCCAGTACTATAGAATTTTGAAGACCTCAC  147
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTTATCTCTCTTAGAGTAGCCCAGTACTATAGAA-TTTGAAGACCTCAC  144

seq1  AGATGGGCAGAGAACAATTTCTGAGTCTGGAATCCTTATTGGTTGTGCCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCAGAGAACAATTTCTGAGTCTGGAATCCTTATTGGTTGTGCCA  194

seq1  ACTCAGATTGCCTTCTCCTACTGGGTACTTATTTTGCCTTCCATCCTCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATTGCCTTCTCCTACTGGGTACTTATTTTGCCTTCCATCCTCTT  244

seq1  CTTAACTTTTCTAAGACTGGGGCATGTCCTTTACTCTTGACTAAAGCCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTTTCTAAGACTGGGGCATGTCCTTTACTCTTGACTAAAGCCAT  294

seq1  CTTCAGAGTTGTGAACTCTTGCTTTTCTTAATGCCTGGTTGTTGAGACTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTTGTGAACTCTTGCTTTTCTTAATGCCTGGTTGTTGAGACTC  344

seq1  AGAGCTAGAGGATCCAGGGGTCTCAGGTGGAGGAGGCAAACCGGGTAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGAGGATCCAGGGGTCTCAGGTGGAGGAGGCAAACCGGGTAATA  394

seq1  GTTGGTTAATAGGATCATACATCACATAGGACAACTTCCCAGGGAAGCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTAATAGGATCATACATCACATAGGACAACTTCCCAGGGAAGCAT  444

seq1  CATCAGTCTTTGATTAATATGGAGTGTGGACGTCTGTGACTGGCCCATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCTTTGATTAATATGGAGTGTGGACGTCTGTGACTGGCCCATCT  494

seq1  TGCTCATTAAGTCACAAGCTAGGGTTCAGACTCCATTTGCAATTCATCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTAAGTCACAAGCTAGGGTTCAGACTCCATTTGCAATTCATCAG  544

seq1  GTCCCATGTTCTCTAATTACAGAGCTGAAGACAGCAACACTCAGATTATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGTTCTCTAATTACAGAGCTGAAGACAGCAACACTCAGATTATC  594

seq1  AAATTTCTTCTCCTTCCTGTGGGAAGATAAACAGATTGGGTGAGGGGGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTCTCCTTCCTGTGGGAAGATAAACAGATTGGGTGAGGGGGTG  644

seq1  TCATGACAATGCATGAGCTATGACGCTGTTGGCATTTCAATTCTTCCTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAATGCATGAGCTATGACGCTGTTGGCATTTCAATTCTTCCTGT  694

seq1  GACCCTCTGTAGAGTCCTTTTGGGTTTCTTTTTCTTGTTATACCTACGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCTGTAGAGTCCTTTTGGGTTTCTTTTTCTTGTTATACCTACGCT  744

seq1  TGTGCGGCTATAAAAACTAGCAAGGAGAAGAGAAGAATAGAATGTAAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGCTATAAAAACTAGCAAGGAGAAGAGAAGAATAGAATGTAAATG  794

seq1  ATTATTTAGTCAAGAAACTCCTGTTTTCATTAATGTTTCTAGGTTTGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGTCAAGAAACTCCTGTTTTCATTAATGTTTCTAGGTTTGGGG  844

seq1  GTGATTTTATATATTCTTGTTGGAAGATGTTTTCTGTTGTGTTGTCGCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTATATATTCTTGTTGGAAGATGTTTTCTGTTGTGTTGTCGCTC  894

seq1  CTGGGTTTAATTTGCTCTCAACATTTTCTTTCCTTAATTAACTCATACAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTAATTTGCTCTCAACATTTTCTTTCCTTAATTAACTCATACAC  944

seq1  AACAAATAGGGGATATCTGTACCTCAGCTCTAGAGCTGACCAGCTGCACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAGGGGATATCTGTACCTCAGCTCTAGAGCTGACCAGCTGCACC  994

seq1  CTAGATCTGGTTTCTGGGCTTCCGGTTTAAGACAGCTGGGCTTCTGGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTGGTTTCTGGGCTTCCGGTTTAAGACAGCTGGGCTTCTGGTTT  1044

seq1  AAGGCAGCTGCTTGTTTTCAGGAAGCCGGAAGTCGTGATTTTAGAGAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTGCTTGTTTTCAGGAAGCCGGAAGTCGTGATTTTAGAGAATT  1094

seq1  C  1098
      |
seq2  C  1095

seq1: chr19_48502502_48503422
seq2: B6Ng01-282L02.g_65_1002

seq1  GAATTCCTTTTCAAATTTGTGAACTGAGACTGAAGAATACGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTCAAATTTGTGAACTGAGACTGAAGAATACGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGAGAGAGAGAGAGTTTTTAGAAAGATATCAATTCTGCCCATTCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGTTTTTAGAAAGATATCAATTCTGCCCATTCTGGAT  150

seq1  ACCTGCTGAGGTGAAAGAAGGGAGATCCCAAAATGATACACAGGCTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGAGGTGAAAGAAGGGAGATCCCAAAATGATACACAGGCTTGGA  200

seq1  ATGGGGGCTGTACTTGTTTAGGCCTCTTAAACCCCACTGAGAGGGCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCTGTACTTGTTTAGGCCTCTTAAACCCCACTGAGAGGGCATGA  250

seq1  GTTTTTACCCCCTTGCAACTTTTTAGAGTCCTGAGTGGGACATAGTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACCCCCTTGCAACTTTTTAGAGTCCTGAGTGGGACATAGTTAAC  300

seq1  ACTTTAGGTGAGGTGGCAGTCCTCTATTTCCTTTTCTTACAATGTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGTGAGGTGGCAGTCCTCTATTTCCTTTTCTTACAATGTCCATG  350

seq1  GATGCTAAATATAACTCAGCGCCCATCAGCTTGGCTGGATGAAGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAATATAACTCAGCGCCCATCAGCTTGGCTGGATGAAGCACACA  400

seq1  GACTTTACAGCCTGTCAACCAAATCCTAGCCCAAAACTCTGTGCCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACAGCCTGTCAACCAAATCCTAGCCCAAAACTCTGTGCCCAAGA  450

seq1  CAATAATATTAGTGTAGTTGTAACTGTCTCATGAAGCTTTTAATGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATTAGTGTAGTTGTAACTGTCTCATGAAGCTTTTAATGGCTGT  500

seq1  CCCTTGGTATCTATAAGGGATTAGACCAAGAACCTTCTAAAGATCTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGTATCTATAAGGGATTAGACCAAGAACCTTCTAAAGATCTCTAA  550

seq1  AGTCATCAACAAAGCCACCATTACCATCTCTCTAGTGACCCTTGACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAACAAAGCCACCATTACCATCTCTCTAGTGACCCTTGACTGTT  600

seq1  GGCTGTTGTTCTTCTGTCTCTAGGGTTTTGGCTCATTGTCAGTAACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGTTCTTCTGTCTCTAGGGTTTTGGCTCATTGTCAGTAACTGGA  650

seq1  GGGGTTCTCGCAGTGAGGTGCCCCTGAGAGTCTGTCTGCTAGGATCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTCGCAGTGAGGTGCCCCTGAGAGTCTGTCTGCTAGGATCTTTG  700

seq1  TGGAAGGGAAGGAAATAAGAGGGTTTGGTGTTAGATTGAATGTGCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGAAGGGAAGGAAATAAGAGGGTTTGGTGTTAGATTGAATGTGCATCAT  750

seq1  GATAACCTGACTTCAGTGGATGATAATCCTCAAACTCCATTCTGGGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTGACTTCAGTGGATGATAATCCTCAAACTCCATTCTGGGTTCC  800

seq1  ATCCTTCAGATTCGTAGGACTCT-GGTTCTGGAAGTTGAGAAC-ATGC-T  847
      |||||||||||||||| |||||| ||||||||||| ||||||| |||| |
seq2  ATCCTTCAGATTCGTAAGACTCTGGGTTCTGGAAG-TGAGAACAATGCTT  849

seq1  GTCATAT-CCTCTGCCCCTC-TCCTC-TTCTTTCTCCTCTAAGATAG-AG  893
      || |||| | |||||||||| ||||| ||||||||||||| ||| || ||
seq2  GTTATATACTTCTGCCCCTCTTCCTCTTTCTTTCTCCTCT-AGAAAGAAG  898

seq1  GATGGAAAT-----AAAGAAG-------GAAGGAAGGAAG  921
      |||||||||     |||||||       |||| |||||||
seq2  GATGGAAATACATGAAAGAAGGATGAACGAAGTAAGGAAG  938