BAC Information

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BAC

Clone NameB6Ng01-284H11
Chromosome19 (Build37)
Map Location 25,267,489 - 25,412,582
singlet/doubletdoublet
Overlap geneDock8, Ankrd15, LOC433233
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, LOC100042503
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284H11.bB6Ng01-284H11.g
ACCGA083160GA083161
length1,1751,123
definitionB6Ng01-284H11.b B6Ng01-284H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,411,404 - 25,412,582)(25,267,489 - 25,268,606)
sequence
gaattccacgctccaaataaaaattataccacatcaaaatgtatactaaa
tatataaatgagaatatttgttatattagtgtggcaaaatttataggtca
tttgaaaacactttgctttcttaaacaaatcaacataaactacccgctag
ccagtggcccgtggaaaattaattttgctgcagttccaaaccaagctatt
gatcaggctagcatctctttactctgagttgactccactagaatttacag
gctggagctgtaatgaaaaatccagtaaaggagagaagagagagaggcac
tgtggattaaaaggccaaatgtacgtgagtagatcaatggctgccggatg
tctttacaatggttctgtggtagctgccgattagagctaaagaatcccca
aagaattcacaaaatctatttaactgagaactcagtaggcttacagatgc
tctctcaattaaaatgttggagagccattgcaaagccgatggcgcaatta
cagggttaatagcaaggtgcactttactagttgaaggaaactgacatttg
gtcttttcctccctccctttatctttccgaagggtcaggagtcaagtttt
cttccctttggttctcagtacatgaggattttcaatgtccttacaagggc
tccagtcccagtgggcagccaggaaggagagtaggaggccggcggtgacc
cgagtgctgagaggatccgtgagtacacgcctgtgtgttatttcccatgc
taccatccaagaacaggctgtacggaggcagtgtgtatgaatgcgcccat
tatgcctatcgccctttgccttatcccactcaaggtctaacactggctta
ggtcacctcccttggatacaatctgtaccatcaactggggtggaggctgc
taaactatgagtagttggcttcatctgggtagcttctcagtgtggttcat
cagcacaccctaataactgacaacttgttcccttcagagcaagttttggg
ttctgcttatttccgtgcttcatggcctgaactgatggctgcacctcggc
ccgttgtagagctggtatattctctgtagagtcagttcacccgcttaacc
tcaaccacttgaaggttctcaatcaaaatgcattctgtactcttcctctt
acatgacttggacaactgacattgt
gaattctctgcttcaaatcatggtttacataaaatgattcatccactggg
gccaccagataagcagatagactcggacagatagaggtagccttcgcttt
agaggagccgctcacagtagcagcctttgctgccgtcacattcattacct
tgtggtatgaagggaaagctgtagggttagcattggattgagaagatgcc
cttaggccagtccgtagtctcctaaaactcttggtcctcctcgggaatcc
gtttcctgagaaattcaagacctccctaggctttttgttttagtgaaaca
agctacaaaattaaatgttcagaagtaaggagccctccccacattctctc
tctcccaagtcatttcattttcattccaactccatctcctgtttcccctc
cctccatcagggaccactggaggtggcccaagtgttcttggctgaaattc
cagctgacccaaagctctaccgacatcacaacaagctgaggttgtgcttc
aaggagttcataatgcggtaagaagggaggtggtggacactggagcgtga
ctgcatgggggcaccgctcagtactggagtgtttgcccaacacgcaagag
gccctaggtgccatccccaccactacaaaaacaaatagaatcatatccca
ggtaccacccagagctactggctcattgactctggtttaagaaccctgct
agatgcttatgatgcacacacacacactgaaccttaaggtccagggcagt
agaccaatggtgcttgtactaccactgagaaactaacacttcttgtgtag
gctgcttcatggctgccatggcactgggcctcacagtcgtgtcgtaagac
cgatatcgtcatcttcgccttacacacgagccatgggaggtttggggatg
gggagatgactttactgactggcacgcagccagttggcagccgggctgag
ttgcagcaggtcttctggttcttgggccatcctgcttctgtctgggctgg
tagtcactgaaccacttaggtcaaggctggtttgtatttatatctatgta
gggtctgcaaattatcagtgaatttcctttgaaaggcctaaacttaggat
ggttctaaaacttgggctttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25411404_25412582
seq2: B6Ng01-284H11.b_44_1218 (reverse)

seq1  ACAATG-CAGTTGTTTCAGACCATGTAAGAGGAAGAGTGTACCAGAAAGC  49
      |||||| |||||| | ||   |||||||||||||||||    ||||| ||
seq2  ACAATGTCAGTTG-TCCAAGTCATGTAAGAGGAAGAGT---ACAGAATGC  46

seq1  ATTTTGATGGAGACCTTTCAAGTGGTTGAGGTTTAGCGGGGTGAACTGGC  99
      |||||||| |||| | ||||||||||||||||| ||| |||||||||| |
seq2  ATTTTGATTGAGAACCTTCAAGTGGTTGAGGTTAAGC-GGGTGAACTGAC  95

seq1  TCTACAGAG-ATATACAGCCTCTTACACGGGCGGA-GTGCAGCCATCAG-  146
      ||||||||| ||||||   ||||   |||||| || ||||||||||||| 
seq2  TCTACAGAGAATATACCAGCTCTACAACGGGCCGAGGTGCAGCCATCAGT  145

seq1  TCAGGCCATGAAGCCAACGG-AATAAGCAGAACCCAAAACTTGCTCTTGA  195
      ||||||||||||||  |||| ||||||||||||||||||||||||| |||
seq2  TCAGGCCATGAAGC--ACGGAAATAAGCAGAACCCAAAACTTGCTC-TGA  192

seq1  AGGGAACAAGTTGTCAGTTATTAGGGTGTGCCTGATGAACCACACCTGAG  245
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AGGGAACAAGTTGTCAGTTATTAGGGTGTG-CTGATGAACCACA-CTGAG  240

seq1  AAGCTACCCAGATGAAGCCAACTACTCATAGTTTAGCAGCCTCCACCCCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCCAGATGAAGCCAACTACTCATAGTTTAGCAGCCTCCACCCCA  290

seq1  GTTGATGGTACAGATTGTATCCAAGGGAGGTGACCTAAGCCAGTGTTAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGTACAGATTGTATCCAAGGGAGGTGACCTAAGCCAGTGTTAGA  340

seq1  CCTTGAGTGGGATAAGGC-AAGGGCGATAGGCATAATGGGCGCATTCATA  394
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTTGAGTGGGATAAGGCAAAGGGCGATAGGCATAATGGGCGCATTCATA  390

seq1  CACACTGCCTCCGTACAGCCTGTTCTTGGATGGTAGCATGGGAAATAACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCCTCCGTACAGCCTGTTCTTGGATGGTAGCATGGGAAATAACA  440

seq1  CACAGGCGTGTACTCACGGATCCTCTCAGCACTCGGGTCACCGCCGGCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCGTGTACTCACGGATCCTCTCAGCACTCGGGTCACCGCCGGCCT  490

seq1  CCTACTCTCCTTCCTGGCTGCCCACTGGGACTGGAGCCCTTGTAAGGACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTCCTTCCTGGCTGCCCACTGGGACTGGAGCCCTTGTAAGGACA  540

seq1  TTGAAAATCCTCATGTACTGAGAACCAAAGGGAAGAAAACTTGACTCCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCCTCATGTACTGAGAACCAAAGGGAAGAAAACTTGACTCCTG  590

seq1  ACCCTTCGGAAAGATAAAGGGAGGGAGGAAAAGACCAAATGTCAGTTTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCGGAAAGATAAAGGGAGGGAGGAAAAGACCAAATGTCAGTTTCC  640

seq1  TTCAACTAGTAAAGTGCACCTTGCTATTAACCCTGTAATTGCGCCATCGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAGTAAAGTGCACCTTGCTATTAACCCTGTAATTGCGCCATCGG  690

seq1  CTTTGCAATGGCTCTCCAACATTTTAATTGAGAGAGCATCTGTAAGCCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAATGGCTCTCCAACATTTTAATTGAGAGAGCATCTGTAAGCCTA  740

seq1  CTGAGTTCTCAGTTAAATAGATTTTGTGAATTCTTTGGGGATTCTTTAGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTCAGTTAAATAGATTTTGTGAATTCTTTGGGGATTCTTTAGC  790

seq1  TCTAATCGGCAGCTACCACAGAACCATTGTAAAGACATCCGGCAGCCATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCGGCAGCTACCACAGAACCATTGTAAAGACATCCGGCAGCCATT  840

seq1  GATCTACTCACGTACATTTGGCCTTTTAATCCACAGTGCCTCTCTCTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTCACGTACATTTGGCCTTTTAATCCACAGTGCCTCTCTCTCTT  890

seq1  CTCTCCTTTACTGGATTTTTCATTACAGCTCCAGCCTGTAAATTCTAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTACTGGATTTTTCATTACAGCTCCAGCCTGTAAATTCTAGTG  940

seq1  GAGTCAACTCAGAGTAAAGAGATGCTAGCCTGATCAATAGCTTGGTTTGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTCAGAGTAAAGAGATGCTAGCCTGATCAATAGCTTGGTTTGG  990

seq1  AACTGCAGCAAAATTAATTTTCCACGGGCCACTGGCTAGCGGGTAGTTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAGCAAAATTAATTTTCCACGGGCCACTGGCTAGCGGGTAGTTTA  1040

seq1  TGTTGATTTGTTTAAGAAAGCAAAGTGTTTTCAAATGACCTATAAATTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTTGTTTAAGAAAGCAAAGTGTTTTCAAATGACCTATAAATTTT  1090

seq1  GCCACACTAATATAACAAATATTCTCATTTATATATTTAGTATACATTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTAATATAACAAATATTCTCATTTATATATTTAGTATACATTTT  1140

seq1  GATGTGGTATAATTTTTATTTGGAGCGTGGAATTC  1179
      |||||||||||||||||||||||||||||||||||
seq2  GATGTGGTATAATTTTTATTTGGAGCGTGGAATTC  1175

seq1: chr19_25267489_25268606
seq2: B6Ng01-284H11.g_64_1186

seq1  GAATTCTCTGCTTCAAATCATGGTTTACATAAAATGATTCATCCACTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTTCAAATCATGGTTTACATAAAATGATTCATCCACTGGG  50

seq1  GCCACCAGATAAGCAGATAGACTCGGACAGATAGAGGTAGCCTTCGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGATAAGCAGATAGACTCGGACAGATAGAGGTAGCCTTCGCTTT  100

seq1  AGAGGAGCCGCTCACAGTAGCAGCCTTTGCTGCCGTCACATTCATTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCCGCTCACAGTAGCAGCCTTTGCTGCCGTCACATTCATTACCT  150

seq1  TGTGGTATGAAGGGAAAGCTGTAGGGTTAGCATTGGATTGAGAAGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATGAAGGGAAAGCTGTAGGGTTAGCATTGGATTGAGAAGATGCC  200

seq1  CTTAGGCCAGTCCGTAGTCTCCTAAAACTCTTGGTCCTCCTCGGGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCAGTCCGTAGTCTCCTAAAACTCTTGGTCCTCCTCGGGAATCC  250

seq1  GTTTCCTGAGAAATTCAAGACCTCCCTAGGCTTTTTGTTTTAGTGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGAGAAATTCAAGACCTCCCTAGGCTTTTTGTTTTAGTGAAACA  300

seq1  AGCTACAAAATTAAATGTTCAGAAGTAAGGAGCCCTCCCCACATTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAAAATTAAATGTTCAGAAGTAAGGAGCCCTCCCCACATTCTCTC  350

seq1  TCTCCCAAGTCATTTCATTTTCATTCCAACTCCATCTCCTGTTTCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAGTCATTTCATTTTCATTCCAACTCCATCTCCTGTTTCCCCTC  400

seq1  CCTCCATCAGGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCAGGGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTC  450

seq1  CAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTC  500

seq1  AAGGAGTTCATAATGCGGTAAGAAGGGAGGTGGTGGACACTGGAGCGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTCATAATGCGGTAAGAAGGGAGGTGGTGGACACTGGAGCGTGA  550

seq1  CTGCATGGGGGCACCGCTCAGTACTGGAGTGTTTGCCCAACACGCAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGGGGGCACCGCTCAGTACTGGAGTGTTTGCCCAACACGCAAGAG  600

seq1  GCCCTAGGTGCCATCCCCACCACTACAAAAACAAATAGAATCATATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGGTGCCATCCCCACCACTACAAAAACAAATAGAATCATATCCCA  650

seq1  GGTACCACCCAGAGCTACTGGCTCATTGACTCTGGTTTAAGAACCCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCACCCAGAGCTACTGGCTCATTGACTCTGGTTTAAGAACCCTGCT  700

seq1  AGATGCTTATGATGCACACACACACACTGAACCTTAAGGTCCAGGGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTATGATGCACACACACACACTGAACCTTAAGGTCCAGGGCAGT  750

seq1  AGACCAATGGTGCTTGTACTACCACTGAGAAACTAACACTTCTTGTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGTGCTTGTACTACCACTGAGAAACTAACACTTCTTGTGTAG  800

seq1  GCTGCTTCATGGCTGCCATGGCACTGGGCCTCACAGTCGTGTCGTAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCATGGCTGCCATGGCACTGGGCCTCACAGTCGTGTCGTAAGAC  850

seq1  CGATATCGTCATCTTCGCCTTACACACGAGCCATGGGAGGTTTGGGGAT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGATATCGTCATCTTCGCCTTACACACGAGCCATGGGAGGTTTGGGGATG  900

seq1  GGGAGATGACTTTACTGACGGCCACGCAGCCAGTTGGCAGCCGGGCTGAG  949
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  GGGAGATGACTTTACTGACTGGCACGCAGCCAGTTGGCAGCCGGGCTGAG  950

seq1  TTGCAGCAGGTCTTCTGGTTCTT-GGCCATCCCTGCTTCTGTCTGGGCTG  998
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TTGCAGCAGGTCTTCTGGTTCTTGGGCCAT-CCTGCTTCTGTCTGGGCTG  999

seq1  GTAGTCACTGACACACTTAAGTCAAAGCT-GTTTGTATTTATA-CTATGT  1046
      |||||||||||  |||||| ||||| ||| ||||||||||||| ||||||
seq2  GTAGTCACTGAACCACTTAGGTCAAGGCTGGTTTGTATTTATATCTATGT  1049

seq1  A-GGTTTGCAAATTATCCAGTG-ATTTCCTTT-AGAAGCCTAAAACTAGG  1093
      | ||| |||||||||| ||||| ||||||||| | | |||||||  ||||
seq2  AGGGTCTGCAAATTAT-CAGTGAATTTCCTTTGAAAGGCCTAAACTTAGG  1098

seq1  AAAGGTTCTAAAAC-TGGGCTTTGGC  1118
       | ||||||||||| |||||||||||
seq2  -ATGGTTCTAAAACTTGGGCTTTGGC  1123