BAC Information

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BAC

Clone NameB6Ng01-285N23
Chromosome19 (Build37)4 (Build37)
Map Location 18,010,004 - 18,010,05682,259,774 - 82,260,698
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285N23.bB6Ng01-285N23.g
ACCGA084211GA084212
length292928
definitionB6Ng01-285N23.b B6Ng01-285N23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,010,004 - 18,010,056)(82,259,774 - 82,260,698)
sequence
agggggtcccctatggagtagttggagaagggactgaaggagctgagggg
ctttgcagtcccatggaaggagcaacagtgtcatcaggccagaccccatc
cctggaactccaggggactgaaccaccaaccaaagaatatacatggaggg
acccatggctctggccacatatgtggcagaggatggccttgtgggacatc
aatgagaggagaggcccttgggcctgagggcgttcgattccccaatgtag
gggaatgccagggcaggaagacaggattgggtgggtgggtgg

gaattcttgggaaaagcagaaagcacaaatgaccaggccccagcttgaag
gcagctgcagccatgagttccggtcaaaatccctcctgttttggatttgg
tgatccgtgtgttcacaaaatgacaaagaagaaaagaggaagcaagggat
gcagtgacgacgtagaaatgggaacaggagaaagtgagagaggctcccag
ctgtctgatttgtgtggtgtgatccctgccatggctccggctcggcagga
tttatgtggcttcattaatcacactttcttttgaaatggaattttctgcc
ttggagcctttgaacattgacatccaaacacaatatattcctttaaaatc
acctctggataaagacaacctgtggaggtaatttccccagctcctaggtg
gggtctgtttgattctcagatcttgatgtaatgtgtgaaattggcccctc
cctgcccagaacagaaaggagttccttgtctctgaccaacaacaagcagt
gccatctagtggcaatttgtttttattttggttaataagaaaggggcctc
ccaggccagctagtgttctcagaatttggggaaaaaaacaaaacaaacaa
acagacaaacaaaaaaaccgctcttgtcatgcagttaaatgacagagaca
agagtgtcgtagaactgccgccaatcaaagtggccgagtccagggtaggc
cttttgttgaggggttgtcagcttttgaggtctgggaagtcgacacaaac
cacacagaacaaagagttccctgggagggggaggaaggcaagaaagaaca
cccttgccaactacacagcaccatgtctaactctaaaactggtctctcag
ttggctggatgagcaaaccagaatgaggtcacgttggaacccaagccttg
gaaagtgacagagttggggctaacccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_18010004_18010056
seq2: B6Ng01-285N23.b_290_342 (reverse)

seq1  CCACCTACCCACCCACTCCTGTCTTCCTGCCCTGGCATTTCCCTACACTG  50
      ||||| ||||||||| ||||||||||||||||||||||| ||||||| ||
seq2  CCACCCACCCACCCAATCCTGTCTTCCTGCCCTGGCATTCCCCTACATTG  50

seq1  GGG  53
      |||
seq2  GGG  53


seq1: chr4_82259774_82260698
seq2: B6Ng01-285N23.g_68_995

seq1  GAATTCTTGGGAAAAGCAGAAAGCACAAATGACCAGGCCCCAGCTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGAAAAGCAGAAAGCACAAATGACCAGGCCCCAGCTTGAAG  50

seq1  GCAGCTGCAGCCATGAGTTCCGGTCAAAATCCCTCCTGTTTTGGATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCAGCCATGAGTTCCGGTCAAAATCCCTCCTGTTTTGGATTTGG  100

seq1  TGATCCGTGTGTTCACAAAATGACAAAGAAGAAAAGAGGAAGCAAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCGTGTGTTCACAAAATGACAAAGAAGAAAAGAGGAAGCAAGGGAT  150

seq1  GCAGTGACGACGTAGAAATGGGAACAGGAGAAAGTGAGAGAGGCTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACGACGTAGAAATGGGAACAGGAGAAAGTGAGAGAGGCTCCCAG  200

seq1  CTGTCTGATTTGTGTGGTGTGATCCCTGCCATGGCTCCGGCTCGGCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATTTGTGTGGTGTGATCCCTGCCATGGCTCCGGCTCGGCAGGA  250

seq1  TTTATGTGGCTTCATTAATCACACTTTCTTTTGAAATGGAATTTTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGGCTTCATTAATCACACTTTCTTTTGAAATGGAATTTTCTGCC  300

seq1  TTGGAGCCTTTGAACATTGACATCCAAACACAATATATTCCTTTAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCCTTTGAACATTGACATCCAAACACAATATATTCCTTTAAAATC  350

seq1  ACCTCTGGATAAAGACAACCTGTGGAGGTAATTTCCCCAGCTCCTAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGATAAAGACAACCTGTGGAGGTAATTTCCCCAGCTCCTAGGTG  400

seq1  GGGTCTGTTTGATTCTCAGATCTTGATGTAATGTGTGAAATTGGCCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTTTGATTCTCAGATCTTGATGTAATGTGTGAAATTGGCCCCTC  450

seq1  CCTGCCCAGAACAGAAAGGAGTTCCTTGTCTCTGACCAACAACAAGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCAGAACAGAAAGGAGTTCCTTGTCTCTGACCAACAACAAGCAGT  500

seq1  GCCATCTAGTGGCAATTTGTTTTTATTTTGGTTAATAAGAAAGGGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTAGTGGCAATTTGTTTTTATTTTGGTTAATAAGAAAGGGGCCTC  550

seq1  CCAGGCCAGCTAGTGTTCTCAGAATTTGGGGAAAAAAACAAAACAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAGCTAGTGTTCTCAGAATTTGGGGAAAAAAACAAAACAAACAA  600

seq1  ACAGACAAACAAAAAAACCGCTCTTGTCATGCAGTTAAATGACAGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAACAAAAAAACCGCTCTTGTCATGCAGTTAAATGACAGAGACA  650

seq1  AGAGTGTCGTAGAACTGCCGCCAATCAAAGTGGCCGAGTCCAGGGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTCGTAGAACTGCCGCCAATCAAAGTGGCCGAGTCCAGGGTAGGC  700

seq1  CTTTTGTTGAGGGGTTGTCAGCTTTTGAGGTCTGGGAAGTCGACACAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGAGGGGTTGTCAGCTTTTGAGGTCTGGGAAGTCGACACAAAC  750

seq1  CACACAGAACAAAGAGTTCCCTGGGAGGGGGAGGAAGGCAAGAGAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACACAGAACAAAGAGTTCCCTGGGAGGGGGAGGAAGGCAAGAAAGAACA  800

seq1  CCCTTGCCAACTACACAGCACCATGTCTAACTCTAAAACT-GTC-CCCAG  848
      |||||||||||||||||||||||||||||||||||||||| ||| | |||
seq2  CCCTTGCCAACTACACAGCACCATGTCTAACTCTAAAACTGGTCTCTCAG  850

seq1  TTTGCT-GATGAGCAAAACCAGAAAGAGGTCACGCTGGAAGCCAAGCCGT  897
      || ||| ||||||| ||||||||| ||||||||| ||||| ||||||| |
seq2  TTGGCTGGATGAGC-AAACCAGAATGAGGTCACGTTGGAACCCAAGCCTT  899

seq1  GG-AAGTGACAGAGGTGGGGCTAACCCCA  925
      || ||||||||||| ||||||||||||||
seq2  GGAAAGTGACAGAGTTGGGGCTAACCCCA  928


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