BAC Information

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BAC

Clone NameB6Ng01-286M17
Chromosome19 (Build37)
Map Location 36,915,885 - 37,042,397
singlet/doubletdoublet
Overlap geneTnks2, Fgfbp3, Btaf1
Upstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c
Downstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286M17.bB6Ng01-286M17.g
ACCGA084897GA084898
length1,1061,153
definitionB6Ng01-286M17.b B6Ng01-286M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,041,251 - 37,042,397)(36,915,885 - 36,917,032)
sequence
gaattccacctataatcataataaaatgttctcctggagcctcttataca
ctgtaataaactttttataaagtaaaaatacatatgaaaattccaaaatt
agacccaattctttgtacagtaacaaaaaattaatttaaaagttataaaa
acaaaagagaactgcttctcaagagctgagtcagtttactgtcagaagac
caacaaaaaataaaatttttaaaaattagttttacaagacaaataacttt
ttttttttttggtttttggtttttttaaagacagggtttctctgtgtagc
cttggctgtcctggaactcactctgtagaccaggctggcctcgaactcca
ggatgaagcctgacaatggaacaagcactggattataaaacactctgtta
aaaaaagaaaagatgtcatgtggttttgacttttggtacagccttaaaca
aggcttctaactttttagaacttgttttcctatgtgaaaataataaggct
accttatcctgcttttctcaggcttcttataaaatataaacaaagaaaaa
cattggtgaataatataaaaagtacatgactgtatagactgcctgctttg
atccgtgctgtatgtttcctgtctatatcatctgaatatgtatctcctgt
ataacttatctcacatcctaagaccatgtattcaatatttaaatgagttc
aaacaattaaagaactatgaaatacactgaatgagttgcaacaatgtaaa
taaccatctttggacttctctgtaaaatctatgaacatcgccaattttgt
gacactttctcaagaaagcaagcttgagcctggcatgatgacatacacaa
tcttagaatccacgaggaaaagaaaagcagagcagaaaatctctgcaatt
ctgagtatagcaagttccagctagctggagataatagggaaatcataaac
aagacaacagcgatcagcatacccatcccacatcacaacaaacagacatc
aagaaaatccctttcaaactgagtagttactgacgactgcaagcaattta
ttcccagaggacacattctacttcccactgttcttggtcatatcagcaga
catcca
gaattctctaatagagataaatggtagaggttgatggaggacagggagag
cagaggtcttgagaaagtgagaagggacttagatatatttcccaaaatat
aataggatatcagtgttctctaattagcttcattaatattcatgtctggc
ttcatagtactccagagtaactatctccagcttggaccagtttcctgagt
tttggatccacagaacctactacttaactgctacttaactgggcatttat
cccatgagcgtgtctctctctctctctttttttaaggtttatttattgtt
atatgtaagtacactgtagctgtcttcagacactccagaagagtgcatca
gatctcattatggatggttgtgagccaccatgtggttgctgggatttaaa
ctcagggtcttcagaagagcactcagtgctcttacctgctgagccatctc
caaccccccatgagcacttctaactaagcatttccagaaccagatcttac
ctactgtttcagttagggttattactgtgataaaacaccatgaccaaaag
cagtttgggaaggaaagggtttatttttgtttacacttctactgcacagt
tgattgctgaagaaagtcaggacagaaattcaaacagcaggaatctggag
gcaggatcagaagcagtgtgcttactggtttcctcagcttgctttgctac
agcacccagaactttgagctcaggtaagtggtactacctccaacggactg
ggccctcccacatccatccatcactgagaatctgccctaaaactgcctgc
ggccagatcttactgaggcagttcctctgttgacattcctcctttcagat
ggttctagcttttgtcaaggtgacaaaacagcaacaacaaaaacaaatag
ctagcacatgccaaccctgttcattctgtatcagattagccagtgggatc
tattgacttactcttccttctcttctttatttatagtgttgtgtgcaata
gtaaaaaagattggaagcttgggcggtgggtgcgcacggcttttattcca
ggctctctcgggaggcagaggccaggcgattttctggagttgaggccagc
ttggtctatcaaattacaagaaaccttgtggtctaaaaccaaaaaaagat
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37041251_37042397
seq2: B6Ng01-286M17.b_45_1150 (reverse)

seq1  TGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACAT  50
      ||||||| ||||||| |    |||| |||||||||||||||| |||| ||
seq2  TGGATGT-CTGCTGATA----TGAC-CAAGAACAGTGGGAAG-TAGA-AT  42

seq1  GGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAGGTAACTAA  100
      |   ||| ||||||||||||   |||||  |||| |||||| |||||| |
seq2  G--TGTCCTCTGGGAATAAA--TTGCTT--GCAG-TCGTCA-GTAACT-A  83

seq1  CTCAGTTTTTGAAAGGGATTTTTCCCTTTTGGATGTCTTGTTTGTTGTGA  150
      |||||  |||||||||||||||   |||   |||||| ||||||||||||
seq2  CTCAG--TTTGAAAGGGATTTT---CTT---GATGTC-TGTTTGTTGTGA  124

seq1  TGTTGGGATGGGTATGCTTGATCGCTTGTTTGTTCCTTTGTTTTATGATT  200
      || |||||||||||||| |||||||     ||||   ||| |||||||||
seq2  TG-TGGGATGGGTATGC-TGATCGC-----TGTTGTCTTG-TTTATGATT  166

seq1  TCCCTATTTATCTCCAGCTAGCCTGGAACTTGCTATACCTCAGAATTGCA  250
      |||||| |||||||||||||| ||||||||||||||| ||||||||||||
seq2  TCCCTA-TTATCTCCAGCTAG-CTGGAACTTGCTATA-CTCAGAATTGCA  213

seq1  GAGATTTTTCTGCCTCTGCCTTTTCTTTTTCCTCGTGGATTCTAAGATTG  300
      |||| ||||||| ||||| |||||| ||||||||||||||||||||||||
seq2  GAGA-TTTTCTG-CTCTG-CTTTTC-TTTTCCTCGTGGATTCTAAGATTG  259

seq1  TGTATGTCATCATGCCAGGCTCAAGCTTGCCTTCTTGAGAAAGTGTCACA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTATGTCATCATGCCAGGCTCAAGCTTGCTTTCTTGAGAAAGTGTCACA  309

seq1  AAATTGGCGATGTTCATAGATTTTACAGAGAAGTCCAAAGATGGTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCGATGTTCATAGATTTTACAGAGAAGTCCAAAGATGGTTATTT  359

seq1  ACATTGTTGCAACTCATTCAGTGTATTTCATAGTTCTTTAATTGTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTGCAACTCATTCAGTGTATTTCATAGTTCTTTAATTGTTTGAA  409

seq1  CTCATTTAAATATTGAATACATGGTCTTAGGATGTGAGATAAGTTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTAAATATTGAATACATGGTCTTAGGATGTGAGATAAGTTATACA  459

seq1  GGAGATACATATTCAGATGATATAGACAGGAAACATACAGCACGGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACATATTCAGATGATATAGACAGGAAACATACAGCACGGATCAA  509

seq1  AGCAGGCAGTCTATACAGTCATGTACTTTTTATATTATTCACCAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGTCTATACAGTCATGTACTTTTTATATTATTCACCAATGTTT  559

seq1  TTCTTTGTTTATATTTTATAAGAAGCCTGAGAAAAGCAGGATAAGGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTATATTTTATAAGAAGCCTGAGAAAAGCAGGATAAGGTAGC  609

seq1  CTTATTATTTTCACATAGGAAAACAAGTTCTAAAAAGTTAGAAGCCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTATTTTCACATAGGAAAACAAGTTCTAAAAAGTTAGAAGCCTTGT  659

seq1  TTAAGGCTGTACCAAAAGTCAAAACCACATGACATCTTTTCTTTTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTGTACCAAAAGTCAAAACCACATGACATCTTTTCTTTTTTTAA  709

seq1  CAGAGTGTTTTATAATCCAGTGCTTGTTCCATTGTCAGGCTTCATCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTTTTATAATCCAGTGCTTGTTCCATTGTCAGGCTTCATCCTGG  759

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCT  809

seq1  ACACAGAGAAACCCTGTCTTTAAAAAAACCAAAAACCAAAAAAAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTTTAAAAAAACCAAAAACCAAAAAAAAAAAAA  859

seq1  GTTATTTGTCTTGTAAAACTAATTTTTAAAAATTTTATTTTTTGTTGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGTCTTGTAAAACTAATTTTTAAAAATTTTATTTTTTGTTGGTC  909

seq1  TTCTGACAGTAAACTGACTCAGCTCTTGAGAAGCAGTTCTCTTTTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACAGTAAACTGACTCAGCTCTTGAGAAGCAGTTCTCTTTTGTTTT  959

seq1  TATAACTTTTAAATTAATTTTTTGTTACTGTACAAAGAATTGGGTCTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTTAAATTAATTTTTTGTTACTGTACAAAGAATTGGGTCTAAT  1009

seq1  TTTGGAATTTTCATATGTATTTTTACTTTATAAAAAGTTTATTACAGTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATTTTCATATGTATTTTTACTTTATAAAAAGTTTATTACAGTGT  1059

seq1  ATAAGAGGCTCCAGGAGAACATTTTATTATGATTATAGGTGGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGCTCCAGGAGAACATTTTATTATGATTATAGGTGGAATTC  1106

seq1: chr19_36915885_36917032
seq2: B6Ng01-286M17.g_70_1222

seq1  GAATTCTCTAATAGAGATAAATGGTAGAGGTTGATGGAGGACAGGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATAGAGATAAATGGTAGAGGTTGATGGAGGACAGGGAGAG  50

seq1  CAGAGGTCTTGAGAAAGTGAGAAGGGACTTAGATATATTTCCCAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCTTGAGAAAGTGAGAAGGGACTTAGATATATTTCCCAAAATAT  100

seq1  AATAGGATATCAGTGTTCTCTAATTAGCTTCATTAATATTCATGTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATATCAGTGTTCTCTAATTAGCTTCATTAATATTCATGTCTGGC  150

seq1  TTCATAGTACTCCAGAGTAACTATCTCCAGCTTGGACCAGTTTCCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTACTCCAGAGTAACTATCTCCAGCTTGGACCAGTTTCCTGAGT  200

seq1  TTTGGATCCACAGAACCTACTACTTAACTGCTACTTAACTGGGCATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCCACAGAACCTACTACTTAACTGCTACTTAACTGGGCATTTAT  250

seq1  CCCATGAGCGTGTCTCTCTCTCTCTCTTTTTTTAAGGTTTATTTATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGCGTGTCTCTCTCTCTCTCTTTTTTTAAGGTTTATTTATTGTT  300

seq1  ATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGTGCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGTGCATCA  350

seq1  GATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTAAA  400

seq1  CTCAGGGTCTTCAGAAGAGCACTCAGTGCTCTTACCTGCTGAGCCATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTCTTCAGAAGAGCACTCAGTGCTCTTACCTGCTGAGCCATCTC  450

seq1  CAACCCCCCATGAGCACTTCTAACTAAGCATTTCCAGAACCAGATCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCCATGAGCACTTCTAACTAAGCATTTCCAGAACCAGATCTTAC  500

seq1  CTACTGTTTCAGTTAGGGTTATTACTGTGATAAAACACCATGACCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTTCAGTTAGGGTTATTACTGTGATAAAACACCATGACCAAAAG  550

seq1  CAGTTTGGGAAGGAAAGGGTTTATTTTTGTTTACACTTCTACTGCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGGAAGGAAAGGGTTTATTTTTGTTTACACTTCTACTGCACAGT  600

seq1  TGATTGCTGAAGAAAGTCAGGACAGAAATTCAAACAGCAGGAATCTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTGAAGAAAGTCAGGACAGAAATTCAAACAGCAGGAATCTGGAG  650

seq1  GCAGGATCAGAAGCAGTGTGCTTACTGGTTTCCTCAGCTTGCTTTGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCAGAAGCAGTGTGCTTACTGGTTTCCTCAGCTTGCTTTGCTAC  700

seq1  AGCACCCAGAACTTTGAGCTCAGGTAAGTGGTACTACCTCCAACGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAGAACTTTGAGCTCAGGTAAGTGGTACTACCTCCAACGGACTG  750

seq1  GGCCCTCCCACATCCATCCATCACTGAGAATCTGCCCTAAAACTGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCCACATCCATCCATCACTGAGAATCTGCCCTAAAACTGCCTGC  800

seq1  GGCCAGATCTTACTGAGGCAGTTCCTCTGTTGACATTTCCTCCTTTCAGA  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCCAGATCTTACTGAGGCAGTTCCTCTGTTGACA-TTCCTCCTTTCAGA  849

seq1  TGGTTCTAGCTTTTGTCAAGGTGACAAAACAGCAACAACAAAAACAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTAGCTTTTGTCAAGGTGACAAAACAGCAACAACAAAAACAAATA  899

seq1  GCTAGCACATGCCAACCCTGTTCATTCTGTATCAGATTAGCCAGTGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCACATGCCAACCCTGTTCATTCTGTATCAGATTAGCCAGTGGGAT  949

seq1  CTATTGACTTACTCTTCCTTCTC-TCTTTATTTATAGTGTTGTGTGCAAT  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTATTGACTTACTCTTCCTTCTCTTCTTTATTTATAGTGTTGTGTGCAAT  999

seq1  AGT-AAAAAGATTGGGAAGC-TGGGC-GTGGTGGCGCACGCCTTTAATCC  1046
      ||| ||||||||| |||||| ||||| ||||  ||||||| |||| || |
seq2  AGTAAAAAAGATT-GGAAGCTTGGGCGGTGGGTGCGCACGGCTTTTATTC  1048

seq1  CAG---CTCTCGGGAGGCAGAGG-CAGGCGGATTTCTGAGTTTGAGGCCA  1092
      |||   ||||||||||||||||| ||||||  ||||||   |||||||||
seq2  CAGGCTCTCTCGGGAGGCAGAGGCCAGGCGATTTTCTGGAGTTGAGGCCA  1098

seq1  GCCTGGTCTA-CAA--TACAGAGAAACCCTGT-GTCAAAAAAACCAAAAA  1138
      || ||||||| |||  |||| ||||||| ||| |||   ||||||  |||
seq2  GCTTGGTCTATCAAATTACA-AGAAACCTTGTGGTC--TAAAACC--AAA  1143

seq1  AAAAGATTGG  1148
      ||||||||||
seq2  AAAAGATTGG  1153