BAC Information

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BAC

Clone NameB6Ng01-287A16
Chromosome19 (Build37)
Map Location 16,131,284 - 16,249,261
singlet/doubletdoublet
Overlap geneGnaq, E030024N20Rik
Upstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287A16.bB6Ng01-287A16.g
ACCGA085075GA085076
length1,1611,134
definitionB6Ng01-287A16.b B6Ng01-287A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,248,105 - 16,249,261)(16,131,284 - 16,132,417)
sequence
gaattccaatgcactcttttgatgacttggaaaggactaaactctgcaga
agcctctaaagcgaacaggacgtagcaccacgtcattgtgagtccctctc
agcagagtccatggctgactacagccagagtcttaaccacatcacactca
gtatcaatcgagccagcagtagttatgaagtccctagatggggccaagcc
cgtgcgtgtctaggtagtatagtggatcccactgcatttcaagaccccca
gtggatggctgaaactgtacacagcaccctacatgtgatgtgagttttcc
aataaataaatgtgtaagataaagtttaatttttgctaaaacacaatatg
agataaacagtgactgataacaaaataaaacaaacataattttacactgg
tttaaaagttatttaagacttatgagttatttagctttggaactttccat
ataatattttaaaactattgttaactgtgaataatggaaataaacatcaa
aaataaaaccttagagaaagcaaatcattgttccaggaatcgagaaatcc
ccaaaacaatggaacttctcagggaccctctagaagggagggcagaggcg
ttaggcaaataactgtgcagagaatagaaagaaaatcttagagcaggcag
tgacactcatgcgctcctcaaagagatgaaagagtcaactgacgcatggt
ggagaaagcactccaagacagacgtgtctcctaactcccagagctacaga
caggctcaggggcttagaggaacttcctaaggatggaagagaggaaagtc
caggaaggaaaaacacatggagatggcagagaagaggaagcacagcggag
cacacacgcaggcacccagctgctagcctccgagtgaaatgacgacagac
tatctctacagggacaatgagccagcactgaaaggaattcacctgctaca
acgaagacgcaagtctttctcatgttgttcattttcactgcccaggccat
ccacagaagaagccctgtaggaacaggacactctcaaagtcagtgctggt
ctgatgatcccacgagaacaacagcggaggggtggcgtggcagtctaaga
gcatcaaagacaacttctggcctggtggggagttatctggaactggctct
gcttgggatct
gaattctactttcctattctctattgacttccttattgcattcagttctt
tatattttgagtctgcatcttctttggtttctttgaacagacttatcatt
tatcaaaggtttcattgaatttattctcattggagaacttgtaaaattag
taatttttaaaaattaatttattttatgtatatgagtgctctatctgcat
ggacacctgtgcaccagaagagggcatcagaccccattacagatgattgt
gaaccatcatgtggttgctggaaactgaactcaggacctctgcaggagca
gcccattctcttaaccactgagccatctctttagccccctaaaattagca
actttatgggaactgtattgcttggctttttttcatgacttttgtgtttt
tgtattgggacttctatatcggctggtcaggtctcagggattttttttat
tttgctttgtttcaatcgctcttattttctcaatagaagtggtttcagtg
ttcatgagggaccaagtggcactgagttcaccatattgtatcacttcttg
gctgggctggtgactaggacatcaggctcagttgtagtattccactggag
atcgatttctgcctacaaaatcaatcacgttcaaagtgtaggcccactat
gagcaagactataatgcaataacaatgcgataacaaagtataagcctcta
aactctaatcatttgggggaagtaagggaacacagataatatagtgtcct
ctaagatatgagctactatagctatgagtggcatgtgggagtaaagaggg
aaatggtggttggtttcaggctgatggaaaaagtatagagaggacaagta
gatcaaatgggtacagtagagacaaggaatgggtgaggtggctttggcta
aagatctcagggttgaaaagacagaggtaaaggcagagagatccaggtct
gggaagctgagcccccagaaactgcaaagcacgttagcttgtggttcatt
tgggaaagtccatcaagtgaaatagaaaaaataaagaatgggcaaaaaaa
gaaacaagacatccatgagtgaggtcctaggaacagatagacatagcttg
cctgcaaccggtgcctggcattaataaaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16248105_16249261
seq2: B6Ng01-287A16.b_45_1205 (reverse)

seq1  AGATCCCAAGCAGAG-CAGTTTTCCAGGATAAACTCCACA----GCCAGG  45
      ||||||||||||||| |||  ||||| ||| |||||| ||    ||||| 
seq2  AGATCCCAAGCAGAGCCAG--TTCCA-GAT-AACTCCCCACCAGGCCAGA  46

seq1  AGTTGTCTTTGATGCTCTTAGAACTGCCACGGCCACCCT-CGCTGT--GT  92
      ||||||||||||||||||||| ||||||||| |  |||| ||||||   |
seq2  AGTTGTCTTTGATGCTCTTAG-ACTGCCACGCCACCCCTCCGCTGTTGTT  95

seq1  CTCGTGGGATCATTCAGACCAGCACTGACTTTGAGAGTGTCCTGTTCTTA  142
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  CTCGTGGGATCA-TCAGACCAGCACTGACTTTGAGAGTGTCCTGTTCCTA  144

seq1  CAGGGCTTCTTCTGTGGATGG-CTTGGCAGTGAAAATGAAC-ACATGAGA  190
      ||||||||||||||||||||| || |||||||||||||||| ||||||||
seq2  CAGGGCTTCTTCTGTGGATGGCCTGGGCAGTGAAAATGAACAACATGAGA  194

seq1  AAGACTTGCGTCTTCGTTGTAGCAGGTGAATTCCTTTCAGTGCTGGCTCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGCGTCTTCGTTGTAGCAGGTGAATTCCTTTCAGTGCTGGCTCA  244

seq1  TTGTCCCTGTAGAGATAGTCTGTCGTCATTTCACTCGGAGGCTAGCAGCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTGTAGAGATAGTCTGTCGTCATTTCACTCGGAGGCTAGCAGCT  294

seq1  GGGTGCCTGCGTGTGTGCTCCGCTGTGCTTCCTCTTCTCTGCCATCTCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTGCGTGTGTGCTCCGCTGTGCTTCCTCTTCTCTGCCATCTCCA  344

seq1  TGTGTTTTTCCTTCCTGGACTTTCCTCTCTTCCATCCTTAGGAAGTTCCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTCCTTCCTGGACTTTCCTCTCTTCCATCCTTAGGAAGTTCCT  394

seq1  CTAAGCCCCTGAGCCTGTCTGTAGCTCTGGGAGTTAGGAGACACGTCTGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCCCTGAGCCTGTCTGTAGCTCTGGGAGTTAGGAGACACGTCTGT  444

seq1  CTTGGAGTGCTTTCTCCACCATGCGTCAGTTGACTCTTTCATCTCTTTGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTGCTTTCTCCACCATGCGTCAGTTGACTCTTTCATCTCTTTGA  494

seq1  GGAGCGCATGAGTGTCACTGCCTGCTCTAAGATTTTCTTTCTATTCTCTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCATGAGTGTCACTGCCTGCTCTAAGATTTTCTTTCTATTCTCTG  544

seq1  CACAGTTATTTGCCTAACGCCTCTGCCCTCCCTTCTAGAGGGTCCCTGAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTATTTGCCTAACGCCTCTGCCCTCCCTTCTAGAGGGTCCCTGAG  594

seq1  AAGTTCCATTGTTTTGGGGATTTCTCGATTCCTGGAACAATGATTTGCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCATTGTTTTGGGGATTTCTCGATTCCTGGAACAATGATTTGCTT  644

seq1  TCTCTAAGGTTTTATTTTTGATGTTTATTTCCATTATTCACAGTTAACAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGTTTTATTTTTGATGTTTATTTCCATTATTCACAGTTAACAA  694

seq1  TAGTTTTAAAATATTATATGGAAAGTTCCAAAGCTAAATAACTCATAAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAAAATATTATATGGAAAGTTCCAAAGCTAAATAACTCATAAGT  744

seq1  CTTAAATAACTTTTAAACCAGTGTAAAATTATGTTTGTTTTATTTTGTTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAACTTTTAAACCAGTGTAAAATTATGTTTGTTTTATTTTGTTA  794

seq1  TCAGTCACTGTTTATCTCATATTGTGTTTTAGCAAAAATTAAACTTTATC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTGTTTATCTCATATTGTGTTTTAGCAAAAATTAAACTTTATC  844

seq1  TTACACATTTATTTATTGGAAAACTCACATCACATGTAGGGTGCTGTGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTTATTTATTGGAAAACTCACATCACATGTAGGGTGCTGTGTA  894

seq1  CAGTTTCAGCCATCCACTGGGGGTCTTGAAATGCAGTGGGATCCACTATA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAGCCATCCACTGGGGGTCTTGAAATGCAGTGGGATCCACTATA  944

seq1  CTACCTAGACACGCACGGGCTTGGCCCCATCTAGGGACTTCATAACTACT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGACACGCACGGGCTTGGCCCCATCTAGGGACTTCATAACTACT  994

seq1  GCTGGCTCGATTGATACTGAGTGTGATGTGGTTAAGACTCTGGCTGTAGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCGATTGATACTGAGTGTGATGTGGTTAAGACTCTGGCTGTAGT  1044

seq1  CAGCCATGGACTCTGCTGAGAGGGACTCACAATGACGTGGTGCTACGTCC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGGACTCTGCTGAGAGGGACTCACAATGACGTGGTGCTACGTCC  1094

seq1  TGTTCGCTTTAGAGGCTTCTGCAGAGTTTAGTCCTTTCCAAGTCATCAAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGCTTTAGAGGCTTCTGCAGAGTTTAGTCCTTTCCAAGTCATCAAA  1144

seq1  AGAGTGCATTGGAATTC  1157
      |||||||||||||||||
seq2  AGAGTGCATTGGAATTC  1161

seq1: chr19_16131284_16132417
seq2: B6Ng01-287A16.g_69_1202

seq1  GAATTCTACTTTCCTATTCTCTATTGACTTCCTTATTGCATTCAGTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTCCTATTCTCTATTGACTTCCTTATTGCATTCAGTTCTT  50

seq1  TATATTTTGAGTCTGCATCTTCTTTGGTTTCTTTGAACAGACTTATCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGAGTCTGCATCTTCTTTGGTTTCTTTGAACAGACTTATCATT  100

seq1  TATCAAAGGTTTCATTGAATTTATTCTCATTGGAGAACTTGTAAAATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGGTTTCATTGAATTTATTCTCATTGGAGAACTTGTAAAATTAG  150

seq1  TAATTTTTAAAAATTAATTTATTTTATGTATATGAGTGCTCTATCTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAAAATTAATTTATTTTATGTATATGAGTGCTCTATCTGCAT  200

seq1  GGACACCTGTGCACCAGAAGAGGGCATCAGACCCCATTACAGATGATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTGTGCACCAGAAGAGGGCATCAGACCCCATTACAGATGATTGT  250

seq1  GAACCATCATGTGGTTGCTGGAAACTGAACTCAGGACCTCTGCAGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCATGTGGTTGCTGGAAACTGAACTCAGGACCTCTGCAGGAGCA  300

seq1  GCCCATTCTCTTAACCACTGAGCCATCTCTTTAGCCCCCTAAAATTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTCTCTTAACCACTGAGCCATCTCTTTAGCCCCCTAAAATTAGCA  350

seq1  ACTTTATGGGAACTGTATTGCTTGGCTTTTTTTCATGACTTTTGTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGGGAACTGTATTGCTTGGCTTTTTTTCATGACTTTTGTGTTTT  400

seq1  TGTATTGGGACTTCTATATCGGCTGGTCAGGTCTCAGGGATTTTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGGGACTTCTATATCGGCTGGTCAGGTCTCAGGGATTTTTTTTAT  450

seq1  TTTGCTTTGTTTCAATCGCTCTTATTTTCTCAATAGAAGTGGTTTCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGTTTCAATCGCTCTTATTTTCTCAATAGAAGTGGTTTCAGTG  500

seq1  TTCATGAGGGACCAAGTGGCACTGAGTTCACCATATTGTATCACTTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGGGACCAAGTGGCACTGAGTTCACCATATTGTATCACTTCTTG  550

seq1  GCTGGGCTGGTGACTAGGACATCAGGCTCAGTTGTAGTATTCCACTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTGGTGACTAGGACATCAGGCTCAGTTGTAGTATTCCACTGGAG  600

seq1  ATCGATTTCTGCCTACAAAATCAATCACGTTCAAAGTGTAGGCCCACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATTTCTGCCTACAAAATCAATCACGTTCAAAGTGTAGGCCCACTAT  650

seq1  GAGCAAGACTATAATGCAATAACAATGCGATAACAAAGTATAAGCCTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGACTATAATGCAATAACAATGCGATAACAAAGTATAAGCCTCTA  700

seq1  AACTCTAATCATTTGGGGGAAGTAAGGGAACACAGATAATATAGTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAATCATTTGGGGGAAGTAAGGGAACACAGATAATATAGTGTCCT  750

seq1  CTAAGATATGAGCTACTATAGCTATGAGTGGCATGTGGGAGTAAAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATATGAGCTACTATAGCTATGAGTGGCATGTGGGAGTAAAGAGGG  800

seq1  AAATGGTGGTTGGTTTCAGGCTGATGGAAAAAGTATAGAGAGGACAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGGTTGGTTTCAGGCTGATGGAAAAAGTATAGAGAGGACAAGTA  850

seq1  GATCAAATGGGTACAGTAGAGACAAGGAATGGGTGAGGTGGCTTTGGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATGGGTACAGTAGAGACAAGGAATGGGTGAGGTGGCTTTGGCTA  900

seq1  AAGATCTCAGGG-TGAAAAGACAGAGGTAAAGGCAGAGAGATCCAGGTCT  949
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  AAGATCTCAGGGTTGAAAAGACAGAGGTAAAGGCAGAGAGATCCAGGTC-  949

seq1  TGGGAAGCTGAG-CCCCAGAAACTGCAAAGCACGTTAGCTTGT-GTTCAT  997
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TGGGAAGCTGAGCCCCCAGAAACTGCAAAGCACGTTAGCTTGTGGTTCAT  999

seq1  TT-GGAAAGTCCATCAAAGTGGAAATAAGAAAAATAAAG-ATGGCAAAAA  1045
      || |||||||||||| |||| ||||||  |||||||||| ||||  ||||
seq2  TTGGGAAAGTCCATC-AAGT-GAAATAGAAAAAATAAAGAATGGGCAAAA  1047

seq1  AAGGAAACAAGACAT-CATGAAGTGAGGTCCTAGG-ACAGAGTAGGACAT  1093
      || |||||||||||| |||| |||||||||||||| ||||| || |||||
seq2  AAAGAAACAAGACATCCATG-AGTGAGGTCCTAGGAACAGA-TA-GACAT  1094

seq1  AGC-TGCCTGCAACCGTGGCCCTGGGTATAAATAAAGGAAGA  1134
      ||| ||||||||||||  |||   || || ||||||||||||
seq2  AGCTTGCCTGCAACCGGTGCC--TGGCATTAATAAAGGAAGA  1134