BAC Information

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BAC

Clone NameB6Ng01-289E15
Chromosome19 (Build37)
Map Location 57,921,644 - 57,922,783
singlet/doubletsinglet
Overlap geneAtrnl1
Upstream geneTdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289E15.g
ACCGA086734
length1,138
definitionB6Ng01-289E15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagacgccatagttaaaggtgtaccgaacagagagacacagcaaa
gtgctgggggcatccgcctgcgtaataaagggagttagactttgctttca
gtgaaatactgaacagaaaatagaaaggcaataatgtcgagcataacgac
tattggtcaacttacacgtggagcatgaagctgacccttcccagccactg
gaagtttccccttctggcctaaccactgagagcttcctctggctttcagg
gggctgggggagacacaggtagggcatcccagaaagagtggccctcggct
gcaggaagcatctcttgtaagagtgtcttctgcacctgtgacactgttag
ctccccctctgcagctgtcaagttgccagcccttagatccttcacccaag
gctaaggctctctccatcccaaccgtccttccctgaacaattatgtcaat
aaacctaacccgacaacgaatgtggagcttttcttcttgcagtggtgttt
gctagcatgcggagcaaattctcagccaaggaaactggattatagttgta
ttcatatcgtataaaatagaatttattacaagtgtattaagtgataaaga
cagtaatcaatgagttatcttaatagacaaatatagtaagtctgaatttt
aactccccaatagcatagcttcatcatcttaagatgccaaaaattaaaat
actatcagtaaaatgtataaacgtatctctcccagtatgtgataggacag
aatttaaaacttatgaaagaactaaataattttgaatacaaaaaattact
atgatttatgagatatatgaaatcctagtccaaaataaaaaacatacatt
taaaacagtatttaccttcttttgaaatttttccaataatatacccagaa
tcctacccataactcctccccaaatcaccaaagttgttcctgttcccgtt
ttcacatgacccatagtctatagttgtatctttctacagtgagaggtcac
gtctgggctgaggttgactttccaggagccatgccttttaaactacttga
cacctcttggaagcatcaggtgtctgttagttgggtggagacccaaaccc
tggtcacctaacgagacatgggaacctttgcacatggc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_57921644_57922783
seq2: B6Ng01-289E15.g_68_1205

seq1  GAATTCAGACGCCATAGTTAAAGGTGTACCGAACAGAGAGACACAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACGCCATAGTTAAAGGTGTACCGAACAGAGAGACACAGCAAA  50

seq1  GTGCTGGGGGCATCCGCCTGCGTAATAAAGGGAGTTAGACTTTGCTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGGCATCCGCCTGCGTAATAAAGGGAGTTAGACTTTGCTTTCA  100

seq1  GTGAAATACTGAACAGAAAATAGAAAGGCAATAATGTCGAGCATAACGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATACTGAACAGAAAATAGAAAGGCAATAATGTCGAGCATAACGAC  150

seq1  TATTGGTCAACTTACACGTGGAGCATGAAGCTGACCCTTCCCAGCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCAACTTACACGTGGAGCATGAAGCTGACCCTTCCCAGCCACTG  200

seq1  GAAGTTTCCCCTTCTGGCCTAACCACTGAGAGCTTCCTCTGGCTTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCCCCTTCTGGCCTAACCACTGAGAGCTTCCTCTGGCTTTCAGG  250

seq1  GGGCTGGGGGAGACACAGGTAGGGCATCCCAGAAAGAGTGGCCCTCGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGGAGACACAGGTAGGGCATCCCAGAAAGAGTGGCCCTCGGCT  300

seq1  GCAGGAAGCATCTCTTGTAAGAGTGTCTTCTGCACCTGTGACACTGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCATCTCTTGTAAGAGTGTCTTCTGCACCTGTGACACTGTTAG  350

seq1  CTCCCCCTCTGCAGCTGTCAAGTTGCCAGCCCTTAGATCCTTCACCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCTGCAGCTGTCAAGTTGCCAGCCCTTAGATCCTTCACCCAAG  400

seq1  GCTAAGGCTCTCTCCATCCCAACCGTCCTTCCCTGAACAATTATGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCTCTCTCCATCCCAACCGTCCTTCCCTGAACAATTATGTCAAT  450

seq1  AAACCTAACCCGACAACGAATGTGGAGCTTTTCTTCTTGCAGTGGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAACCCGACAACGAATGTGGAGCTTTTCTTCTTGCAGTGGTGTTT  500

seq1  GCTAGCATGCGGAGCAAATTCTCAGCCAAGGAAACTGGATTATAGTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATGCGGAGCAAATTCTCAGCCAAGGAAACTGGATTATAGTTGTA  550

seq1  TTCATATCGTATAAAATAGAATTTATTACAAGTGTATTAAGTGATAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCGTATAAAATAGAATTTATTACAAGTGTATTAAGTGATAAAGA  600

seq1  CAGTAATCAATGAGTTATCTTAATAGACAAATATAGTAAGTCTGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCAATGAGTTATCTTAATAGACAAATATAGTAAGTCTGAATTTT  650

seq1  AACTCCCCAATAGCATAGCTTCATCATCTTAAGATGCCAAAAATTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCAATAGCATAGCTTCATCATCTTAAGATGCCAAAAATTAAAAT  700

seq1  ACTATCAGTAAAATGTATAAACGTATCTCTCCCAGTATGTGATAGGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAGTAAAATGTATAAACGTATCTCTCCCAGTATGTGATAGGACAG  750

seq1  AATTTAAAACTTATGAAAGAACTAAATAATTTTGAATACAAAAAATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACTTATGAAAGAACTAAATAATTTTGAATACAAAAAATTACT  800

seq1  ATGATTTATGAGATATATGAAATCCTAGTCCAAAATAAAAAACATACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATGAGATATATGAAATCCTAGTCCAAAATAAAAAACATACATT  850

seq1  TAAAACAGTATTTACCTTC-TTTGAAATTTTTCCAATAATATACCCAGAA  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAACAGTATTTACCTTCTTTTGAAATTTTTCCAATAATATACCCAGAA  900

seq1  TCCTACCCATAACTCCTCCCCAAATCACCAAAGTTGTTCCCTGTTCCCGT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCTACCCATAACTCCTCCCCAAATCACCAAAGTTGTT-CCTGTTCCCGT  949

seq1  TTTCACATGACCCATAGTCTATAGTTTGTATCTTTCTACAGTGAGAGGTC  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTCACATGACCCATAGTCTATAG-TTGTATCTTTCTACAGTGAGAGGTC  998

seq1  ACGTTCTGGGCTGAGGTTGACTTTCCAGGAGCCATGCCTTTTAAAACCTA  1049
      ||| |||||||||||||||||||||||||||||||||||||||||  |||
seq2  ACG-TCTGGGCTGAGGTTGACTTTCCAGGAGCCATGCCTTTTAAA--CTA  1045

seq1  CTTGACACCTCTTGGAAGCATCAGGTGTCTGTTAGT--GGTGGAGACCAA  1097
      ||||||||||||||||||||||||||||||||||||  |||||||||| |
seq2  CTTGACACCTCTTGGAAGCATCAGGTGTCTGTTAGTTGGGTGGAGACCCA  1095

seq1  AACCCTGG-CAACCACAGAG-CATGGAAACTTTTTGGCACATGGC  1140
      |||||||| || | |  ||| ||||| ||| |||  |||||||||
seq2  AACCCTGGTCACCTAACGAGACATGGGAACCTTT--GCACATGGC  1138