BAC Information

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BAC

Clone NameB6Ng01-290P20
Chromosome19 (Build37)
Map Location 50,842,426 - 50,943,859
singlet/doubletdoublet
Overlap genenone
Upstream geneSiah1-ps1, EG433251, Sorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290P20.bB6Ng01-290P20.g
ACCGA087993GA087994
length1,0741,147
definitionB6Ng01-290P20.b B6Ng01-290P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,842,426 - 50,843,504)(50,942,707 - 50,943,859)
sequence
gaattctccaattcttcaatttatataactgacaagaagctaacaagtgg
cacttagagatctattatcatcagggattaaaatgtatgatcccctctta
ttctatccattcataaataaagggcagtttccagatggctgccatataca
caaaggcatccaaaaaatgattatttctttctagaaagatgcctaggagt
aggggttaagttcaaagcatttatatcccacaaaaagcaggaatatttca
aaaatgattaaaaaaaacaatcaattttacatatttgatgccactgtttt
gagcttcttatgcatgactcagttgtgaaatctctcttcaattcccccct
tttttcccagctcagtgccaagcttgaagttcagaattcttaacagtaat
caccaaggcctgtctgcactgaccattgttccaagacaacacacgcaata
ccatccacgttcataagatagctgtactcatcaattaactatcaactctg
ggttctttaaactcttcccatcctctgcatcatcatagattataaatgtg
tttatgtgtatttctcttactgtattatttttcctaatttaatctgttag
ttgtaaaattatatctttgtttttcatatctgaaataacaattatattat
tattattgttgttgttgttgtttgtgtatgattgtgtgtgtttctgcacg
tgctagtctgtatgtatgcacatgtgtacacatgctttcgaaagcataag
gtctatgttgtttctttcataatcactctccaccctaagctttggagaga
gcgtttctttctgatcctgaatttcagtgattcacctagacatgttggtc
ttcaggaccctatatccttctatttctgctttcccagaaaagccaaaatt
ttacgtgagagtttacatcagatgagaatcaaggaagttggccagcagac
aaaattagtactgcttcctcaagatttcaacgttaaacatttaaatatag
aatctggatatactattgtgtaaaatgatataatgagtctgaaaaattta
cattctgggactgatcacagggac

gaattctcaggtttagcacattcctctccatgttattacattattctgca
gtgactttataaagtaagagtcttagctgaagaaacagagaaattataat
tttgctctagcccgcacgatggccaccgcaaaactgaattcagaatccag
aacactggcatcaagcctactttcccatatttttaatatgtctagagact
gacattcgatattgacattggaatatgaattttaaaaggtcttggataat
attgaatgtaggtcatacccccaaaagatcaattagataattgtatctaa
gttttcttacaaatggtggtaagccaaggatataggatgaacctatgata
aactaatttgcataaaccaatcatgcttctatattaccggacttttagac
tatgcatgactaccctccacgtgcagatatagtagataaagtatactgat
tttcctgatttgcttaatcacagactttaatggaattgctatgtcaatct
gaacacatttcaggaagcactaaactgatggagatttattaatatgtaaa
acagtaaagtaaagcatagagaaatggagagttacttaagatcaccttac
tagttagtgttagagaaatgaacagttacacaagatcaccttactagtta
gtgttggaaaaatgggcagttacacaagatcaccttactagttagtgttg
gagaaatggacagttacacaagatcaagttactagttagtgttagagaaa
tgaacggttactcacgatcaccttactagttagtgttagagaaatggaca
cttataaaaggtccctgcgcacagagagagatggggatgctcgctagata
atgaagtgagtaacatctgccaaaacaggtcagccacttttatagccttt
gtcatgagaatgaaaatgaaagaactgtccctaaaactaagaaataatgc
acagtacattagacagccttctgtgtctttagatatctatcacaaatagt
gaaagaagatatctgcaaccattatacatatattcttctattattaaaga
acatttagacatatgaagaatggggtgatagctggaccatcactaatggt
gattatctttctcaaatatgtgacattggaaagaaacacatttaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50842426_50843504
seq2: B6Ng01-290P20.b_50_1123

seq1  GAATTCTCCAATTCTTCAATTTATATAACTGACAAGAAGCTAACAAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAATTCTTCAATTTATATAACTGACAAGAAGCTAACAAGTGG  50

seq1  CACTTAGAGATCTATTATCATCAGGGATTAAAATGTATGATCCCCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAGATCTATTATCATCAGGGATTAAAATGTATGATCCCCTCTTA  100

seq1  TTCTATCCATTCATAAATAAAGGGCAGTTTCCAGATGGCTGCCATATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCATTCATAAATAAAGGGCAGTTTCCAGATGGCTGCCATATACA  150

seq1  CAAAGGCATCCAAAAAATGATTATTTCTTTCTAGAAAGATGCCTAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCATCCAAAAAATGATTATTTCTTTCTAGAAAGATGCCTAGGAGT  200

seq1  AGGGGTTAAGTTCAAAGCATTTATATCCCACAAAAAGCAGGAATATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTAAGTTCAAAGCATTTATATCCCACAAAAAGCAGGAATATTTCA  250

seq1  AAAATGATTAAAAAAAACAATCAATTTTACATATTTGATGCCACTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTAAAAAAAACAATCAATTTTACATATTTGATGCCACTGTTTT  300

seq1  GAGCTTCTTATGCATGACTCAGTTGTGAAATCTCTCTTCAATTCCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCTTATGCATGACTCAGTTGTGAAATCTCTCTTCAATTCCCCCCT  350

seq1  TTTTTCCCAGCTCAGTGCCAAGCTTGAAGTTCAGAATTCTTAACAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAGCTCAGTGCCAAGCTTGAAGTTCAGAATTCTTAACAGTAAT  400

seq1  CACCAAGGCCTGTCTGCACTGACCATTGTTCCAAGACAACACACGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGCCTGTCTGCACTGACCATTGTTCCAAGACAACACACGCAATA  450

seq1  CCATCCACGTTCATAAGATAGCTGTACTCATCAATTAACTATCAACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACGTTCATAAGATAGCTGTACTCATCAATTAACTATCAACTCTG  500

seq1  GGTTCTTTAAACTCTTCCCATCCTCTGCATCATCATAGATTATAAATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTAAACTCTTCCCATCCTCTGCATCATCATAGATTATAAATGTG  550

seq1  TTTATGTGTATTTCTCTTACTGTATTATTTTTCCTAATTTAATCTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTATTTCTCTTACTGTATTATTTTTCCTAATTTAATCTGTTAG  600

seq1  TTGTAAAATTATATCTTTGTTTTTCATATCTGAAATAACAATTATATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAATTATATCTTTGTTTTTCATATCTGAAATAACAATTATATTAT  650

seq1  TATTATTGTTGTTGTTGTTGTTTGTGTATGATTGTGTGTGTTTCTGCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTTGTTGTTGTTGTTTGTGTATGATTGTGTGTGTTTCTGCACG  700

seq1  TGCTAGTCTGTATGTATGCACATGTGTACACATGCTTTCGAAAGCATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTCTGTATGTATGCACATGTGTACACATGCTTTCGAAAGCATAAG  750

seq1  GTCTATGTTGTTTCTTTCATAATCACTCTCCACCCTAAGCTTTGGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTTGTTTCTTTCATAATCACTCTCCACCCTAAGCTTTGGAGAGA  800

seq1  GCGTTTCTTTCTGATCCTGAATTTCAGTGATTCACCTAGACATGTTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCTTTCTGATCCTGAATTTCAGTGATTCACCTAGACATGTTGGTC  850

seq1  TTCAGGACCCTATATCCTTCTATTTCTGCTTTCCCAGAAAAGCCAAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACCCTATATCCTTCTATTTCTGCTTTCCCAGAAAAGCCAAAATT  900

seq1  TTACGTGAGAGTTTACATCAGATGAGAATCAAGGAAGTTGGCCAGCAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGAGAGTTTACATCAGATGAGAATCAAGGAAGTTGGCCAGCAGAC  950

seq1  AAAATTAGTACTGCTTCCTCAAGATTTCAACGTTTAAACATTTAAATATA  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAATTAGTACTGCTTCCTCAAGATTTCAACG-TTAAACATTTAAATATA  999

seq1  GAAATCTGGATATACTATTGTGTAAAAATGATAATAATTGAGTCTTGAAA  1050
      | ||||||||||||||||||||| |||||||| |||| |||||| |||||
seq2  G-AATCTGGATATACTATTGTGT-AAAATGAT-ATAA-TGAGTC-TGAAA  1044

seq1  AATTAACATTCT-GGACTGATCACAGGGAC  1079
      |||| ||||||| |||||||||||||||||
seq2  AATTTACATTCTGGGACTGATCACAGGGAC  1074


seq1: chr19_50942707_50943859
seq2: B6Ng01-290P20.g_66_1212 (reverse)

seq1  AGTTAGTAATGTGTTTCTTTTCAAATGTCACATATGTGAG-AAGATAATC  49
      |||||  |||||||||| |||| |||||||||||| |||| |||||||||
seq2  AGTTA--AATGTGTTTC-TTTCCAATGTCACATATTTGAGAAAGATAATC  47

seq1  A-CATTAGTGAT-GTTCAACTATTCACCCATTCTCCATATGTCTAAATGG  97
      | |||||||||| || || ||||   |||||||| |||||||||||||| 
seq2  ACCATTAGTGATGGTCCAGCTATCACCCCATTCTTCATATGTCTAAATGT  97

seq1  TCTTTAAT-ATAGAAGATATTATTGTTATAATGGTTTGCAGATATCCTTC  146
      |||||||| |||||||  | |||   |||||||| |||||||||| ||||
seq2  TCTTTAATAATAGAAG--AATATATGTATAATGG-TTGCAGATAT-CTTC  143

seq1  TTTCACCTATTTGTGATAGATATCTAAAGACACAAGAAGGCTGTCTAATG  196
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCA-CTATTTGTGATAGATATCTAAAGACAC-AGAAGGCTGTCTAATG  191

seq1  TACTGTGCATTATTTCTTAGTTTTAGGGACAGTTTCTTTCATTTTCATTC  246
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTGTGCATTATTTCTTAGTTTTAGGGACAG-TTCTTTCATTTTCATTC  240

seq1  TCATGACAAAGGCTATAAAAGTGGCTGACCTGTTTTGGCAGATGTTACTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAAAGGCTATAAAAGTGGCTGACCTGTTTTGGCAGATGTTACTC  290

seq1  ACTTCATTATCTAGCGAGCATCCCCATCTCTCTCTGTGCGCAGGGACCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTATCTAGCGAGCATCCCCATCTCTCTCTGTGCGCAGGGACCTT  340

seq1  TTATAAGTGTCCATTTCTCTAACACTAACTAGTAAGGTGATCGTGAGTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGTCCATTTCTCTAACACTAACTAGTAAGGTGATCGTGAGTAA  390

seq1  CCGTTCATTTCTCTAACACTAACTAGTAACTTGATCTTGTGTAACTGTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCATTTCTCTAACACTAACTAGTAACTTGATCTTGTGTAACTGTCC  440

seq1  ATTTCTCCAACACTAACTAGTAAGGTGATCTTGTGTAACTGCCCATTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAACACTAACTAGTAAGGTGATCTTGTGTAACTGCCCATTTTT  490

seq1  CCAACACTAACTAGTAAGGTGATCTTGTGTAACTGTTCATTTCTCTAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTAACTAGTAAGGTGATCTTGTGTAACTGTTCATTTCTCTAACA  540

seq1  CTAACTAGTAAGGTGATCTTAAGTAACTCTCCATTTCTCTATGCTTTACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAGTAAGGTGATCTTAAGTAACTCTCCATTTCTCTATGCTTTACT  590

seq1  TTACTGTTTTACATATTAATAAATCTCCATCAGTTTAGTGCTTCCTGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTTTACATATTAATAAATCTCCATCAGTTTAGTGCTTCCTGAAA  640

seq1  TGTGTTCAGATTGACATAGCAATTCCATTAAAGTCTGTGATTAAGCAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGATTGACATAGCAATTCCATTAAAGTCTGTGATTAAGCAAAT  690

seq1  CAGGAAAATCAGTATACTTTATCTACTATATCTGCACGTGGAGGGTAGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATCAGTATACTTTATCTACTATATCTGCACGTGGAGGGTAGTC  740

seq1  ATGCATAGTCTAAAAGTCCGGTAATATAGAAGCATGATTGGTTTATGCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGTCTAAAAGTCCGGTAATATAGAAGCATGATTGGTTTATGCAA  790

seq1  ATTAGTTTATCATAGGTTCATCCTATATCCTTGGCTTACCACCATTTGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTATCATAGGTTCATCCTATATCCTTGGCTTACCACCATTTGTA  840

seq1  AGAAAACTTAGATACAATTATCTAATTGATCTTTTGGGGGTATGACCTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTAGATACAATTATCTAATTGATCTTTTGGGGGTATGACCTAC  890

seq1  ATTCAATATTATCCAAGACCTTTTAAAATTCATATTCCAATGTCAATATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATTATCCAAGACCTTTTAAAATTCATATTCCAATGTCAATATC  940

seq1  GAATGTCAGTCTCTAGACATATTAAAAATATGGGAAAGTAGGCTTGATGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCAGTCTCTAGACATATTAAAAATATGGGAAAGTAGGCTTGATGC  990

seq1  CAGTGTTCTGGATTCTGAATTCAGTTTTGCGGTGGCCATCGTGCGGGCTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCTGGATTCTGAATTCAGTTTTGCGGTGGCCATCGTGCGGGCTA  1040

seq1  GAGCAAAATTATAATTTCTCTGTTTCTTCAGCTAAGACTCTTACTTTATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATTATAATTTCTCTGTTTCTTCAGCTAAGACTCTTACTTTATA  1090

seq1  AAGTCACTGCAGAATAATGTAATAACATGGAGAGGAATGTGCTAAACCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTGCAGAATAATGTAATAACATGGAGAGGAATGTGCTAAACCTG  1140

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1147


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