BAC Information

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BAC

Clone NameB6Ng01-293N03
Chromosome19 (Build37)
Map Location 61,016,926 - 61,126,581
singlet/doubletdoublet
Overlap geneGprk5, LOC671322
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3
Downstream geneBC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293N03.bB6Ng01-293N03.g
ACCGA090106GA090107
length9461,102
definitionB6Ng01-293N03.b B6Ng01-293N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,016,926 - 61,017,859)(61,125,458 - 61,126,581)
sequence
gaattctttggcttttgtattgtagagtgtttattgacaccactagtctt
actcattggattccaggaacatctttttcattattacaacccaaattgac
tgcaaatactgccaaatgtcccttggaggcaaaaaccactcagggtggga
gtcgagaacctttggcttagattttggtagttttgaatttgtgccctgtt
tggacttgtgcatttccagtcctcatccctcccatgagtgttgagccatt
tgtcttttttcactctcaccttgtcttgaaatagcgctatacctgggtaa
ctgtgccaggttaggccctagtttggcagaatgaagtgcatcatattgta
tggggaggggaggtagccagtgatctatcaggctaggttttatggcagat
atgtgggtagcaagactgtcctggggacctggggagattgtttagttagt
aaagtactttctgcattatcataaagacatgagtttgggtctccagcacc
catgtaaagcctggcatcgtgggtctgtaactgcagtgctggaaggaaag
agacaggcagatttctagagttaattggccaactagcctagtcaggtttt
tttttttttttttttttttttgagacagggtttctctgtatagccctggc
tgtcctggaactcactctgtagaccaggctggcctccaactcagaaatcc
gcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactg
cccggcgagttccaggtttaattaaaagaccctgtctcaaaaataaagtg
tatgcctgttacatgtagttcattttgcaccacacatatatgcatacaca
ccaaccactacaaagcattatcacaagactgctttagaagaccatattct
tgtaaataggaaaagcttgggcaggaatctttggtgggaattggag
gaattctaggttcaatgtagagacttggtctcaaaaaataaggtagagag
caatattagaagacacctaaaatcaacttctagaatccaatgtaccaaca
caaatatgtctcactagttctatttgttcatttgttcacacacacacaca
cacacacacacacacacacagagtaaggagtggaagggataaaaaggaga
aaggaagaaagaagtactgatgaagatataaataaatcagaactttcaag
tgatggttacatggtctaatataatttatttcattttcactttatatgta
ggagtgttttgcctgcatctatgcctgtgtaccactggtgctcacagaag
ccatgaaacgttcttctttctcttctttgggcaccaggtttcctcctcct
cctttcagatctgttttgatagcatggccttctagaagttcccctggttc
cctggctgggctcacagcttcttgagacaaacttccttgtatgatctcta
acactactgtcatcataaatatttaattgattttcaactgggctctagaa
ctttctacacagcattgacttgtatcagccaactgatcaaccaactgggc
ttcttagaatcccacattgaggcagagaagcccaacaaaagaatagatta
ctcagcactaaatcagagcaatggactggcgaggcctcaggcactggaag
gcattagaaccaaacaaatgtagacacaagggtgacagagatggagcaga
gagcagcattcttaaaatagcagggacaaagaccaatgaggctgtacatc
aacatgggtctggaaaggatggggatagcacctgagctgaaccttgaaca
aagttcaagtatgatttagtttggggggcactggctctggggctttattg
aagctatcaacctctagctcaggccctcaccagccctttgttcattctga
accaggcttctgcaacactgaaaagctctttcaggaaaggctgagagcag
ttcaaatttattgtaaggaaacactcaccaggatgctcccagtccctgaa
ctgcagcagatgcgtgttattcagaacctgaggagtactaagaaaaatgt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_61016926_61017859
seq2: B6Ng01-293N03.b_46_991

seq1  GAATTCTTTGGCTTTTGTATTGTAGAGTGTTTATTGACACCACTAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCTTTTGTATTGTAGAGTGTTTATTGACACCACTAGTCTT  50

seq1  ACTCATTGGATTCCAGGAACATCTTTTTCATTATTACAACCCAAATTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGGATTCCAGGAACATCTTTTTCATTATTACAACCCAAATTGAC  100

seq1  TGCAAATACTGCCAAATGTCCCTTGGAGGCAAAAACCACTCAGGGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATACTGCCAAATGTCCCTTGGAGGCAAAAACCACTCAGGGTGGGA  150

seq1  GTCGAGAACCTTTGGCTTAGATTTTGGTAGTTTTGAATTTGTGCCCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGAACCTTTGGCTTAGATTTTGGTAGTTTTGAATTTGTGCCCTGTT  200

seq1  TGGACTTGTGCATTTCCAGTCCTCATCCCTCCCATGAGTGTTGAGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGTGCATTTCCAGTCCTCATCCCTCCCATGAGTGTTGAGCCATT  250

seq1  TGTCTTTTTTCACTCTCACCTTGTCTTGAAATAGCGCTATACCTGGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTCACTCTCACCTTGTCTTGAAATAGCGCTATACCTGGGTAA  300

seq1  CTGTGCCAGGTTAGGCCCTAGTTTGGCAGAATGAAGTGCATCATATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAGGTTAGGCCCTAGTTTGGCAGAATGAAGTGCATCATATTGTA  350

seq1  TGGGGAGGGGAGGTAGCCAGTGATCTATCAGGCTAGGTTTTATGGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGGAGGTAGCCAGTGATCTATCAGGCTAGGTTTTATGGCAGAT  400

seq1  ATGTGGGTAGCAAGACTGTCCTGGGGACCTGGGGAGATTGTTTAGTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTAGCAAGACTGTCCTGGGGACCTGGGGAGATTGTTTAGTTAGT  450

seq1  AAAGTACTTTCTGCATTATCATAAAGACATGAGTTTGGGTCTCCAGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTTCTGCATTATCATAAAGACATGAGTTTGGGTCTCCAGCACC  500

seq1  CATGTAAAGCCTGGCATCGTGGGTCTGTAACTGCAGTGCTGGAAGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAGCCTGGCATCGTGGGTCTGTAACTGCAGTGCTGGAAGGAAAG  550

seq1  AGACAGGCAGATTTCTAGAGTTAATTGGCCAACTAGCCTAGTCAGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAGATTTCTAGAGTTAATTGGCCAACTAGCCTAGTCAGGTTTT  600

seq1  TTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGC  650

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCCAACTCAGAAATCC  700

seq1  GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTG  750

seq1  CCCGGCGAGTTCCAGGTTTAATTAAGAGACCCTGTCTCAAAAATAAAGTG  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCGGCGAGTTCCAGGTTTAATTAAAAGACCCTGTCTCAAAAATAAAGTG  800

seq1  TATGCCTG-TACATGTAGTTCA-TTTGCA-CACACATATATGCATACACA  847
      |||||||| ||||||||||||| |||||| ||||||||||||||||||||
seq2  TATGCCTGTTACATGTAGTTCATTTTGCACCACACATATATGCATACACA  850

seq1  -CAACCAC-AC-AAGCA-TATCACAAGACTGCTTTAG-AGACCATA-TCT  891
       ||||||| || ||||| ||||||||||||||||||| |||||||| |||
seq2  CCAACCACTACAAAGCATTATCACAAGACTGCTTTAGAAGACCATATTCT  900

seq1  TGTAA--AGGAAAGGCTTGGGGCAGG-ATCTTTGGTGGG-AGTGGAG  934
      |||||  |||||| |||| ||||||| |||||||||||| | |||||
seq2  TGTAAATAGGAAAAGCTT-GGGCAGGAATCTTTGGTGGGAATTGGAG  946

seq1: chr19_61125458_61126581
seq2: B6Ng01-293N03.g_67_1168 (reverse)

seq1  CAACATTTTTTCCTTAAGTACTCCTCAGTTTCTGAAATTTAAACCACACC  50
      ||||||||||  ||| |||||||||||| |||||||   |||  |||  |
seq2  CAACATTTTT--CTT-AGTACTCCTCAGGTTCTGAA---TAA--CAC-GC  41

seq1  ATCTGCTGCAGTTCAGGGACCTGGGGAGGCCATCCCCTGGGTTGAGTGTT  100
      ||||||||||||||||||||   |||||  |||  |||||  ||||||||
seq2  ATCTGCTGCAGTTCAGGGAC--TGGGAG--CAT--CCTGG--TGAGTGTT  83

seq1  TTCCTACAATAAATTTTGAACTGCCTTCTCAGCCTTTCCTGAAGGAGCTT  150
      | | ||||||||| ||||||||||  ||||||||||||||||| |||| |
seq2  TCCTTACAATAAA-TTTGAACTGC--TCTCAGCCTTTCCTGAAAGAGC-T  129

seq1  TTTCAGTGGTGCAGAAGCCCTGGTTCAGAATGAACAAAGGGCTGGGTGAG  200
      |||||||| |||||||| ||||||||||||||||||||||||| ||||||
seq2  TTTCAGTGTTGCAGAAG-CCTGGTTCAGAATGAACAAAGGGCT-GGTGAG  177

seq1  GGCCTGAGCTAGAGGTTGATAGCTTCAATAAAGCCCCAGAGCCAGTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGCTAGAGGTTGATAGCTTCAATAAAGCCCCAGAGCCAGTGCCC  227

seq1  CCCAAACTAAATCATACTTGAACTTTGTTCAAGGTTCAGCTCAGGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTAAATCATACTTGAACTTTGTTCAAGGTTCAGCTCAGGTGCTA  277

seq1  TCCCCATCCTTTCCAGACCCATGTTGATGTACAGCCTCATTGGTCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCTTTCCAGACCCATGTTGATGTACAGCCTCATTGGTCTTTGT  327

seq1  CCCTGCTATTTTAAGAATGCTGCTCTCTGCTCCATCTCTGTCACCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTATTTTAAGAATGCTGCTCTCTGCTCCATCTCTGTCACCCTTGT  377

seq1  GTCTACATTTGTTTGGTTCTAATGCCTTCCAGTGCCTGAGGCCTCGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATTTGTTTGGTTCTAATGCCTTCCAGTGCCTGAGGCCTCGCCAG  427

seq1  TCCATTGCTCTGATTTAGTGCTGAGTAATCTATTCTTTTGTTGGGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCTCTGATTTAGTGCTGAGTAATCTATTCTTTTGTTGGGCTTCT  477

seq1  CTGCCTCAATGTGGGATTCTAAGAAGCCCAGTTGGTTGATCAGTTGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAATGTGGGATTCTAAGAAGCCCAGTTGGTTGATCAGTTGGCTG  527

seq1  ATACAAGTCAATGCTGTGTAGAAAGTTCTAGAGCCCAGTTGAAAATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTCAATGCTGTGTAGAAAGTTCTAGAGCCCAGTTGAAAATCAAT  577

seq1  TAAATATTTATGATGACAGTAGTGTTAGAGATCATACAAGGAAGTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTATGATGACAGTAGTGTTAGAGATCATACAAGGAAGTTTGTC  627

seq1  TCAAGAAGCTGTGAGCCCAGCCAGGGAACCAGGGGAACTTCTAGAAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGCTGTGAGCCCAGCCAGGGAACCAGGGGAACTTCTAGAAGGCC  677

seq1  ATGCTATCAAAACAGATCTGAAAGGAGGAGGAGGAAACCTGGTGCCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCAAAACAGATCTGAAAGGAGGAGGAGGAAACCTGGTGCCCAAA  727

seq1  GAAGAGAAAGAAGAACGTTTCATGGCTTCTGTGAGCACCAGTGGTACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAGAAGAACGTTTCATGGCTTCTGTGAGCACCAGTGGTACACA  777

seq1  GGCATAGATGCAGGCAAAACACTCCTACATATAAAGTGAAAATGAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGATGCAGGCAAAACACTCCTACATATAAAGTGAAAATGAAATAA  827

seq1  ATTATATTAGACCATGTAACCATCACTTGAAAGTTCTGATTTATTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTAGACCATGTAACCATCACTTGAAAGTTCTGATTTATTTATAT  877

seq1  CTTCATCAGTACTTCTTTCTTCCTTTCTCCTTTTTATCCCTTCCACTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCAGTACTTCTTTCTTCCTTTCTCCTTTTTATCCCTTCCACTCCT  927

seq1  TACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACAAATGAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACAAATGAAC  977

seq1  AAATAGAACTAGTGAGACATATTTGTGTTGGTACATTGGATTCTAGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAACTAGTGAGACATATTTGTGTTGGTACATTGGATTCTAGAAGT  1027

seq1  TGATTTTAGGTGTCTTCTAATATTGCTCTCTACCTTATTTTTTGAGACCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGGTGTCTTCTAATATTGCTCTCTACCTTATTTTTTGAGACCA  1077

seq1  AGTCTCT-CATTGAACCTAGAATTC  1124
      ||||||| |||||||||||||||||
seq2  AGTCTCTACATTGAACCTAGAATTC  1102