BAC Information

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BAC

Clone NameB6Ng01-293N23
Chromosome19 (Build37)
Map Location 20,540,896 - 20,690,843
singlet/doubletdoublet
Overlap geneE030003E18Rik, EG626549, Aldh1a1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneAldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293N23.bB6Ng01-293N23.g
ACCGA090146GA090147
length718679
definitionB6Ng01-293N23.b B6Ng01-293N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,540,896 - 20,541,610)(20,690,165 - 20,690,843)
sequence
gaattcatagaccaacctcactgaatatatactagtaaagaaactctcaa
accattttaagcaaaagcctaaaatagcacaattcaaatgcattatgttt
ttgttagtggggttgccagacattggaaaggtacccatgctactgtaaac
aacctaacgaagcccttccagactctctctctctctctctctctctctct
ctctctctctcacacacacacacacacacacacacacacacacacacaca
cacacacacacactagcaggaggagtagacaagaggaagacaatcagtgg
gagaggagggagcaaaacatggtaaagtgagataaatatgagccgaaggc
actattatttacatggaaatgtcttattatgtatcattaatacacattga
taaaaatttgaacataaatctaacccacaaaataattttaatgaaattat
actcagaatatgaaaaaatgcatcagttctttatttcagaacaagtaaaa
aaaatggcaaaaaaaagagatttggtataaaagatatgaagtgaatgctg
acagcagacagacagctcttccccaaggaagaccataccaattggttatc
caataccaaatgatcagatgagcgatcctatggatataagtattatacaa
actgagtaggttatattggagaacatatacatatacttattatgcatata
atagcaattaattttttt
gaattcagtatgctgtggtggctcagtcataggattgtgtggctaaggaa
gagccctaccagcatcccaggtaaaaggacacttggataatgaagaagga
caacagctgatttttttttttttctagtttcaactctgtcatggtctttt
gcattggataaatccacaaaaaatatactgttgattgtgaaagtgtaaaa
ccccaagggaagtttgtgacttcagaatggcccttctaaatatgtggaac
ttcagtgagatgcatagtttgggacctggcaagtttttatttgagtggct
tacttaatccagctgtgcactgtttttctttgtgatttcatcacaataaa
gtgatttaagagagagggcctttatgctctaggcacaaaggcaggatctt
tatagccccattgttactattacaattaagcattaggtaccttgatttgt
aggtgagtagtttatgcttgtgaagcacagcaaaaagcagaggcaaattt
tgattctaggaatgacctccatagctgcttctatctcagcaagacagtct
aacaaagcttctttgggtattagagtcactattctctgaattacagactg
taagacttcttgctattcttttgtttttgttttggttttggtttttggtt
tttagtttttggtttttagtttttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20540896_20541610
seq2: B6Ng01-293N23.b_48_762

seq1  GAATTCATAGACCAACCTCACTGAATATATACTAGTAAAGAAACTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGACCAACCTCACTGAATATATACTAGTAAAGAAACTCTCAA  50

seq1  ACCATTTTAAGCAAAAGCCTAAAATAGCACAATTCAAATGCATTATGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTAAGCAAAAGCCTAAAATAGCACAATTCAAATGCATTATGTTT  100

seq1  TTGTTAGTGGGGTTGCCAGACATTGGAAAGGTACCCATGCTACTGTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTGGGGTTGCCAGACATTGGAAAGGTACCCATGCTACTGTAAAC  150

seq1  AACCTAACGAAGCCCTTCCAGACTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAACGAAGCCCTTCCAGACTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCACACACACACACACACACACACACACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCACACACACACACACACACACACACACACACACACACACA  250

seq1  CACACACACACACTAGCAGGAGGAGTAGACAAGAGGAAGACAATCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTAGCAGGAGGAGTAGACAAGAGGAAGACAATCAGTGG  300

seq1  GAGAGGAGGGAGCAAAACATGGTAAAGTGAGATAAATATGAGCCGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGGAGCAAAACATGGTAAAGTGAGATAAATATGAGCCGAAGGC  350

seq1  ACTATTATTTACATGGAAATGTCTTATTATGTATCATTAATACACATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATTTACATGGAAATGTCTTATTATGTATCATTAATACACATTGA  400

seq1  TAAAAATTTGAACATAAATCTAACCCACAAAATAATTTTAATGAAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTGAACATAAATCTAACCCACAAAATAATTTTAATGAAATTAT  450

seq1  ACTCAGAATATGAAAAAATGCATCAGTTCTTTATTTCAGAACAAGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATATGAAAAAATGCATCAGTTCTTTATTTCAGAACAAGTAAAA  500

seq1  AAAATGGCAAAAAAAAGAGATTTGGTATAAAAGATATGAAGTGAATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCAAAAAAAAGAGATTTGGTATAAAAGATATGAAGTGAATGCTG  550

seq1  ACAGCAGACAGACAGCTCTTCCCCAAGGAAGACCATACCAATTGGTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGACAGACAGCTCTTCCCCAAGGAAGACCATACCAATTGGTTATC  600

seq1  CAATACCAAATGATCAGATGAGCGATCCTATGGATATAAGTATTATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAAATGATCAGATGAGCGATCCTATGGATATAAGTATTATACAA  650

seq1  ACTGAGTAGGTTATATTGGAGAACATATACATATACTTATTATGCATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTAGGTTATATTGGAGAACATATACATATACTTATTATGCATATA  700

seq1  ATAGCAATTAATTTT  715
      |||||||||||||||
seq2  ATAGCAATTAATTTT  715

seq1: chr19_20690165_20690843
seq2: B6Ng01-293N23.g_69_747 (reverse)

seq1  AAACCAAAAACTAAAAACCAAAAACTAAAAACCAAAAACCAAAACCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAACTAAAAACCAAAAACTAAAAACCAAAAACCAAAACCAAAA  50

seq1  CAAAAACAAAAGAATAGCAAGAAGTCTTACAGTCTGTAATTCAGAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAAGAATAGCAAGAAGTCTTACAGTCTGTAATTCAGAGAATA  100

seq1  GTGACTCTAATACCCAAAGAAGCTTTGTTAGACTGTCTTGCTGAGATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTAATACCCAAAGAAGCTTTGTTAGACTGTCTTGCTGAGATAGA  150

seq1  AGCAGCTATGGAGGTCATTCCTAGAATCAAAATTTGCCTCTGCTTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTATGGAGGTCATTCCTAGAATCAAAATTTGCCTCTGCTTTTTGC  200

seq1  TGTGCTTCACAAGCATAAACTACTCACCTACAAATCAAGGTACCTAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCACAAGCATAAACTACTCACCTACAAATCAAGGTACCTAATGC  250

seq1  TTAATTGTAATAGTAACAATGGGGCTATAAAGATCCTGCCTTTGTGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTAATAGTAACAATGGGGCTATAAAGATCCTGCCTTTGTGCCTA  300

seq1  GAGCATAAAGGCCCTCTCTCTTAAATCACTTTATTGTGATGAAATCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAAAGGCCCTCTCTCTTAAATCACTTTATTGTGATGAAATCACAA  350

seq1  AGAAAAACAGTGCACAGCTGGATTAAGTAAGCCACTCAAATAAAAACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACAGTGCACAGCTGGATTAAGTAAGCCACTCAAATAAAAACTTG  400

seq1  CCAGGTCCCAAACTATGCATCTCACTGAAGTTCCACATATTTAGAAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCCAAACTATGCATCTCACTGAAGTTCCACATATTTAGAAGGGC  450

seq1  CATTCTGAAGTCACAAACTTCCCTTGGGGTTTTACACTTTCACAATCAAC  500
      ||||||||||||||                 |||||||||||||||||||
seq2  CATTCTGAAGTCACNNNNNNNNNNNNNNNNNTTACACTTTCACAATCAAC  500

seq1  AGTATATTTTTTGTGGATTTATCCAATGCAAAAGACCATGACAGAGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTTTTGTGGATTTATCCAATGCAAAAGACCATGACAGAGTTGA  550

seq1  AACTAGAAAAAAAAAAAAATCAGCTGTTGTCCTTCTTCATTATCCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAAAAAAAAAAATCAGCTGTTGTCCTTCTTCATTATCCAAGTG  600

seq1  TCCTTTTACCTGGGATGCTGGTAGGGCTCTTCCTTAGCCACACAATCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTACCTGGGATGCTGGTAGGGCTCTTCCTTAGCCACACAATCCTA  650

seq1  TGACTGAGCCACCACAGCATACTGAATTC  679
      |||||||||||||||||||||||||||||
seq2  TGACTGAGCCACCACAGCATACTGAATTC  679