BAC Information

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BAC

Clone NameB6Ng01-294J08
Chromosome19 (Build37)
Map Location 41,129,480 - 41,289,728
singlet/doubletdoublet
Overlap geneDntt, Tmem10, Tll2, Tm9sf3
Upstream geneCyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155
Downstream genePik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J08.bB6Ng01-294J08.g
ACCGA090674GA090675
length1,1061,100
definitionB6Ng01-294J08.b B6Ng01-294J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,288,609 - 41,289,728)(41,129,480 - 41,130,591)
sequence
gaattctctagagcagagtattttagtatttgtaactggcagactctggt
tccattgtatttgtttcaaaatgtgtttttgtttgtttgtttgtttcagg
agcaatcggttacatgggaacaagtgcctttgttcgaaaaatctatacta
atgtgaaaattgactagatatctgagacaacatggaacttcggatcagtt
tctctttcatgagggtggaacttgcacagaaaagaagaataatcgcaaga
agagatttgggcttaacactgggtactttgtgggtctcttttgtggatgg
cttcaagtaacatctatttccattgatcctaggttcttactgactgcttt
ctccagctgttcacagcagatgcttggattttatgcagtaggctttacta
cagtacatggctaatcttccccaaactagctcattaaagatgaaatagac
cagctctcttcagtgaagaggacaaatagtttatttaaagcatttgttcc
aataaaataactagagggaaacttggatgctaaaattccataagtagaaa
aatcttcctggcacttggtgtttctatgttattgaaaaatgatgttccag
aaagattactttttcttttatttttactgccattgttgatgtgttgtggg
acatttttatatattgaacctgggttcttttttgatctgttttggtcgtc
cctccattcaactgcatcttttttttttttaaaaacaaaattaaaagcta
ttcaattctgcatggaatatatctgctgtcatcttaatcttagtttggat
caacctcatttatttatcttaaaattaaccagctttctcagttccatcca
aagaagatacagtatgaaagtagaggtgcactctctataatacaatctac
tgtacagttagcaagcgaagtgttaaatggagaagatgcttgttttttat
taaacattggagatttagatattacatttaactgatgtctaagtgattat
cttccccctccctcccccagttatcttcatctttgtttttggtttcatga
aggctttacataagaaatattaacaaacagggggcaataatgttatataa
cattaa
gaattcttactgctagagggtgcgactgtcccaatgttttgcctaatccc
agggggaaagacaaagttctggacctgggaactttccaggtttctcttag
gaaaccagcagcagtatttgtgattcactgtccttgtttctagtgtttgc
tggtcacttgtcctaggcttcagatttgctccctgaaacctcaggatata
cttttgatcatgacagatgtaattccggggcaggtgactcttcacagaat
ctcagtatgagtggacatcaaagaggaaaggaccttaacgttcactccct
ccaccttgggacaaagcaaggttcagagaagctacgtagtaaggacacat
agataggcataatatctgggccaagatctccccactcctcaccctctatt
ataataatgatatttgaaacttaaaacgatttaggtcacattttcctctg
gaccaggtattattctagaaacaacgctcctactgtccatttatccactc
aacagatattcacacatcacctgccgcctgttgggcagtgattgacaagg
gtccaagccaatcagcttcttgttcacattgagtttctgttctagtacag
ggagcccagagctcagccacccgggagctttgccctgaggaagaaagtca
ccccaaaaatttatgttagagacagcagtttcaaacacccaagggctttg
gatagctctaaacaccgtgtacccgaaataatctggactagacggtaatt
tgttttaattctctttgtagcagtttgagagagacttgcggcgctatgcc
acacacgagaggaagatgatgctggacaaccacgccctgtatgacaggac
taaggtagtgttcccttctggggatgggtgactgaccttacctgtaagcc
ctccctttgaacagattttctaaaacaatattcattacacttatttattt
tttttacattggggaaaatgttgcatgtagaggtcaaggggagccagttc
tttcctatcacataggttctaggaatgaactcaggctcagttggcagcag
tactcacctgctggtccactaatccaatccctacccctaccaactgattt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41288609_41289728
seq2: B6Ng01-294J08.b_49_1154 (reverse)

seq1  TTAATGTTATATACATTTATTGCCCCCCTTGTTTTGTTTAATAATTTCTT  50
      |||||||||||||   |||||||||||  |||||   ||||| |||||||
seq2  TTAATGTTATATAACATTATTGCCCCC--TGTTT--GTTAAT-ATTTCTT  45

seq1  ATGTAAAGCCTTCATTGAAACCCAAAAACAAAGATGGAAGATTAACTTGG  100
      |||||||||||||| ||||| |||||||||||||| ||||| |||| |||
seq2  ATGTAAAGCCTTCA-TGAAA-CCAAAAACAAAGAT-GAAGA-TAAC-TGG  90

seq1  GGGAGGGA-GGGGAAGATAATCACTTTAGACATTCAGTTAAAATGTAAAT  149
      |||||||| ||||||||||||||| ||||||| |||||| ||||||||  
seq2  GGGAGGGAGGGGGAAGATAATCAC-TTAGACA-TCAGTT-AAATGTAA--  135

seq1  TATCTAAATCTCCAAATGTTTAAT-AAAAACAAGCATCTTCTCCATTTAA  198
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  TATCTAAATCTCC-AATGTTTAATAAAAAACAAGCATCTTCTCCATTTAA  184

seq1  CACTTCGCTTGCTAACTGTACAGTAGATTGTATTATAGAGAGTGCACCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCGCTTGCTAACTGTACAGTAGATTGTATTATAGAGAGTGCACCTC  234

seq1  TACTTTCATACTGTATCTTCTTTGGATGGAACTGAGAAAGCTGGTTAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCATACTGTATCTTCTTTGGATGGAACTGAGAAAGCTGGTTAATT  284

seq1  TTAAGATAAATAAATGAGGTTGATCCAAACTAAGATTAAGATGACAGCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAAATAAATGAGGTTGATCCAAACTAAGATTAAGATGACAGCAG  334

seq1  ATATATTCCATGCAGAATTGAATAGCTTTTAATTTTGTTTTTAAAAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCCATGCAGAATTGAATAGCTTTTAATTTTGTTTTTAAAAAAAA  384

seq1  AAAAGATGCAGTTGAATGGAGGGACGACCAAAACAGATCAAAAAAGAACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGCAGTTGAATGGAGGGACGACCAAAACAGATCAAAAAAGAACC  434

seq1  CAGGTTCAATATATAAAAATGTCCCACAACACATCAACAATGGCAGTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAATATATAAAAATGTCCCACAACACATCAACAATGGCAGTAAA  484

seq1  AATAAAAGAAAAAGTAATCTTTCTGGAACATCATTTTTCAATAACATAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGAAAAAGTAATCTTTCTGGAACATCATTTTTCAATAACATAGA  534

seq1  AACACCAAGTGCCAGGAAGATTTTTCTACTTATGGAATTTTAGCATCCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGTGCCAGGAAGATTTTTCTACTTATGGAATTTTAGCATCCAA  584

seq1  GTTTCCCTCTAGTTATTTTATTGGAACAAATGCTTTAAATAAACTATTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTCTAGTTATTTTATTGGAACAAATGCTTTAAATAAACTATTTG  634

seq1  TCCTCTTCACTGAAGAGAGCTGGTCTATTTCATCTTTAATGAGCTAGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCACTGAAGAGAGCTGGTCTATTTCATCTTTAATGAGCTAGTTT  684

seq1  GGGGAAGATTAGCCATGTACTGTAGTAAAGCCTACTGCATAAAATCCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGATTAGCCATGTACTGTAGTAAAGCCTACTGCATAAAATCCAAG  734

seq1  CATCTGCTGTGAACAGCTGGAGAAAGCAGTCAGTAAGAACCTAGGATCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTGAACAGCTGGAGAAAGCAGTCAGTAAGAACCTAGGATCAA  784

seq1  TGGAAATAGATGTTACTTGAAGCCATCCACAAAAGAGACCCACAAAGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAGATGTTACTTGAAGCCATCCACAAAAGAGACCCACAAAGTAC  834

seq1  CCAGTGTTAAGCCCAAATCTCTTCTTGCGATTATTCTTCTTTTCTGTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTAAGCCCAAATCTCTTCTTGCGATTATTCTTCTTTTCTGTGCA  884

seq1  AGTTCCACCCTCATGAAAGAGAAACTGATCCGAAGTTCCATGTTGTCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCCTCATGAAAGAGAAACTGATCCGAAGTTCCATGTTGTCTCA  934

seq1  GATATCTAGTCAATTTTCACATTAGTATAGATTTTTCGAACAAAGGCACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAGTCAATTTTCACATTAGTATAGATTTTTCGAACAAAGGCACT  984

seq1  TGTTCCCATGTAACCGATTGCTCCTGAAACAAACAAACAAACAAAAACAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCATGTAACCGATTGCTCCTGAAACAAACAAACAAACAAAAACAC  1034

seq1  ATTTTGAAACAAATACAATGGAACCAGAGTCTGCCAGTTACAAATACTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAACAAATACAATGGAACCAGAGTCTGCCAGTTACAAATACTAA  1084

seq1  AATACTCTGCTCTAGAGAATTC  1120
      ||||||||||||||||||||||
seq2  AATACTCTGCTCTAGAGAATTC  1106

seq1: chr19_41129480_41130591
seq2: B6Ng01-294J08.g_67_1166

seq1  GAATTCTTACTGCTAGAGGGTGCGACTGTCCCAATGTTTTGCCTAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGCTAGAGGGTGCGACTGTCCCAATGTTTTGCCTAATCCC  50

seq1  AGGGGGAAAGACAAAGTTCTGGACCTGGGAACTTTCCAGGTTTCTCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAAGACAAAGTTCTGGACCTGGGAACTTTCCAGGTTTCTCTTAG  100

seq1  GAAACCAGCAGCAGTATTTGTGATTCACTGTCCTTGTTTCTAGTGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGCAGCAGTATTTGTGATTCACTGTCCTTGTTTCTAGTGTTTGC  150

seq1  TGGTCACTTGTCCTAGGCTTCAGATTTGCTCCCTGAAACCTCAGGATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTTGTCCTAGGCTTCAGATTTGCTCCCTGAAACCTCAGGATATA  200

seq1  CTTTTGATCATGACAGATGTAATTCCGGGGCAGGTGACTCTTCACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATCATGACAGATGTAATTCCGGGGCAGGTGACTCTTCACAGAAT  250

seq1  CTCAGTATGAGTGGACATCAAAGAGGAAAGGACCTTAACGTTCACTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATGAGTGGACATCAAAGAGGAAAGGACCTTAACGTTCACTCCCT  300

seq1  CCACCTTGGGACAAAGCAAGGTTCAGAGAAGCTACGTAGTAAGGACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGGGACAAAGCAAGGTTCAGAGAAGCTACGTAGTAAGGACACAT  350

seq1  AGATAGGCATAATATCTGGGCCAAGATCTCCCCACTCCTCACCCTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCATAATATCTGGGCCAAGATCTCCCCACTCCTCACCCTCTATT  400

seq1  ATAATAATGATATTTGAAACTTAAAACGATTTAGGTCACATTTTCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGATATTTGAAACTTAAAACGATTTAGGTCACATTTTCCTCTG  450

seq1  GACCAGGTATTATTCTAGAAACAACGCTCCTACTGTCCATTTATCCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTATTATTCTAGAAACAACGCTCCTACTGTCCATTTATCCACTC  500

seq1  AACAGATATTCACACATCACCTGCCGCCTGTTGGGCAGTGATTGACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATATTCACACATCACCTGCCGCCTGTTGGGCAGTGATTGACAAGG  550

seq1  GTCCAAGCCAATCAGCTTCTTGTTCACATTGAGTTTCTGTTCTAGTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCCAATCAGCTTCTTGTTCACATTGAGTTTCTGTTCTAGTACAG  600

seq1  GGAGCCCAGAGCTCAGCCACCCGGGAGCTTTGCCCTGAGGAAGAAAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGAGCTCAGCCACCCGGGAGCTTTGCCCTGAGGAAGAAAGTCA  650

seq1  CCCCAAAAATTTATGTTAGAGACAGCAGTTTCAAACACCCAAGGGCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAATTTATGTTAGAGACAGCAGTTTCAAACACCCAAGGGCTTTG  700

seq1  GATAGCTCTAAACACCGTGTACCCGAAATAATCTGGACTAGACGGTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCTAAACACCGTGTACCCGAAATAATCTGGACTAGACGGTAATT  750

seq1  TGTTTTAATTCTCTTTGTAGCAGTTTGAGAGAGACTTGCGGCGCTATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATTCTCTTTGTAGCAGTTTGAGAGAGACTTGCGGCGCTATGCC  800

seq1  ACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGAC  850

seq1  TAAGGTAGTGTTCCCTTCTGGGGATGGGTGACTGACCTTACCTGTAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGTGTTCCCTTCTGGGGATGGGTGACTGACCTTACCTGTAAGCC  900

seq1  CTCCCTTTGAACAGATTTTCTAAAACAATATTCATTACACTTATTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTGAACAGATTTTCTAAAACAATATTCATTACACTTATTTATTT  950

seq1  TTTTTACATTGGGGAAAATGGTTGCATGTAGAGGTC-AGGGGAGCCAGTT  999
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TTTTTACATTGGGGAAAAT-GTTGCATGTAGAGGTCAAGGGGAGCCAGTT  999

seq1  CTTTCCTATCACATAGGTTCTAGGGATGGAACTCCGGGCCTCAGGTTTGG  1049
      |||||||||||||||||||||||| || |||||| ||  |||||  ||||
seq2  CTTTCCTATCACATAGGTTCTAGGAAT-GAACTCAGG--CTCAG--TTGG  1044

seq1  CAGCAAGTACCTTCACCTGCTGGTCCCACTTATCCCATCCCTACCCCCAA  1099
      |||| |||||  |||||||||||| ||||| |||| ||||||||||| | 
seq2  CAGC-AGTAC--TCACCTGCTGGT-CCACTAATCCAATCCCTACCCCTA-  1089

seq1  CCCAAACTGATTT  1112
        | |||||||||
seq2  --CCAACTGATTT  1100