BAC Information

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BAC

Clone NameB6Ng01-297I20
Chromosome19 (Build37)8 (Build37)
Map Location 38,430,228 - 38,431,3333,469,139 - 3,469,633
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
Downstream geneTmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297I20.bB6Ng01-297I20.g
ACCGA092882GA092883
length1,088967
definitionB6Ng01-297I20.b B6Ng01-297I20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,430,228 - 38,431,333)(3,469,139 - 3,469,633)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aaaaccaaaaccaaaccaaaccaaaccaaacaaaacaaaacaaaacaaaa
acaaaaataatcaacattttagccttgttaagtgaatagttctttggcat
caagttctttcaccatccaattctagaacgttcccatcttcctttactgg
actttgacccatcacacactaagccctcatcctagcctcttaccaggctt
ggcaactgtctgataaaataaataaggcttcctactccttatttccctgc
atcctggcccacagggacctgggtttaccacccttgtttcttggggtttt
agagccatctcctaggttatatttccttctgtataattttcacaggatca
ctttgttttgtgctgttcagaggaataagcttgggtaacctggaaatgtt
ataggctgtcccctgtctatggatggatccatccattcacggatggaccc
atcattgatggacagtgagctgcatgcctgtagctctgtgagccaggccg
accctctgtaaggatgccaaagaaggaggtacgcttcatcatgggacatt
ctcacctcttctcccacgagctctcttctgactgatgattccctgatccg
tgaaaggaaaattggatcaaggactacaaactgttttcattgaaaacagg
ttggttaagctattgagccagtctgcccagacatgagtcaccggcagtta
aagccaggttaaaggtaataatattgctggaatacagccttttagggcaa
gcgttcaacaaaagcagggctaattaacaaagggtggtggtgatgctggg
tggtgggacctcaagcaatgggagacctggaggccaaactcagtccagac
agatcttattgggacctgtgtgaggtattttaaatatgattagctggtga
atttgaaatcaatttctgggtttgggttgaaatgttggcacactcctaga
atcctgctggtaaagaataggtttcccactcgtattcctacagctgccca
cagaccaggtttgcactctgtttctgggggtttagagc
gaattcaacattagccgagtattggatattgcaggacacagggcatcttc
aacacttttcagagttaactgatattttgcttttctagcagttaatgctg
agaattgtgctacacacacatatacatacactcacactcatacacacaca
tgagcacatgcatgcacacacataaacacatgaacacatacacacattaa
cacatgtactcacacatatacacatactcacacacacacacaggcacatg
tgtacacgcatatacatatatacatatactcacacacatgctcacacaca
ctaacacatgtatgcacgcactcacacacatacacacactcaaacacaaa
cacacacacacatatatatatatgtatatatatatcggcagaagtttatt
tagagacatttcagaaattgtgggaaattttatgctgatctcaagccaaa
attcatttaactttttcttagtgaaccgcaagttggcaattcaaacagca
ttatgtaaaatcataatacaagccaaaggtaaactaatttgatgtgtgca
tactgaagggtggcagtaggaaaatactgaaatttttttcttttctttaa
acaatatttctatcagagcagtaaatcttgtatgtgcagtaaaaacataa
caatctatgacattttgagttctacctgagttgatacagttgactggtgg
tgtgtggagtgaggacgtatcctgtgtaaggtacctatgctgtgtgtgct
ggcctaagactatggtgaggttatgcaatgcaacatagtaaacgctgcca
gaaacaccttagattgattattaatttgactttgaattaaattgttgtgg
ttcagtgttcgggaaccttttattgtggtgaccttttttgtttttcttaa
tctcagttatgtgacccccatatgaggtcatgactcacagtttaagaagc
cacgggctagacgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38430228_38431333
seq2: B6Ng01-297I20.b_47_1134

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AAAACCAAAACCAAACCAAACCAAACCAAACAAAACAAAACAAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACCAAACCAAACCAAACCAAACAAAACAAAACAAAACAAAA  100

seq1  ACAAAAATAATCAACATTTTAGCCTTGTTAAGTGAATAGTTCTTTGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAATCAACATTTTAGCCTTGTTAAGTGAATAGTTCTTTGGCAT  150

seq1  CAAGTTCTTTCACCATCCAATTCTAGAACGTTCCCATCTTCCTTTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTTTCACCATCCAATTCTAGAACGTTCCCATCTTCCTTTACTGG  200

seq1  ACTTTGACCCATCACACACTAAGCCCTCATCCTAGCCTCTTACCAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACCCATCACACACTAAGCCCTCATCCTAGCCTCTTACCAGGCTT  250

seq1  GGCAACTGTCTGATAAAATAAATAAGGCTTCCTACTCCTTATTTCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGTCTGATAAAATAAATAAGGCTTCCTACTCCTTATTTCCCTGC  300

seq1  ATCCTGGCCCACAGGGACCTGGGTTTACCACCCTTGTTTCTTGGGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCCCACAGGGACCTGGGTTTACCACCCTTGTTTCTTGGGGTTTT  350

seq1  AGAGCCATCTCCTAGGTTATATTTCCTTCTGTATAATTTTCACAGGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATCTCCTAGGTTATATTTCCTTCTGTATAATTTTCACAGGATCA  400

seq1  CTTTGTTTTGTGCTGTTCAGAGGAATAAGCTTGGGTAACCTGGAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTGCTGTTCAGAGGAATAAGCTTGGGTAACCTGGAAATGTT  450

seq1  ATAGGCTGTCCCCTGTCTATGGATGGATCCATCCATTCACGGATGGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGTCCCCTGTCTATGGATGGATCCATCCATTCACGGATGGACCC  500

seq1  ATCATTGATGGACAGTGAGCTGCATGCCTGTAGCTCTGTGAGCCAGGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGATGGACAGTGAGCTGCATGCCTGTAGCTCTGTGAGCCAGGCCG  550

seq1  ACCCTCTGTAAGGATGCCAAAGAAGGAGGTACGCTTCATCATGGGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGTAAGGATGCCAAAGAAGGAGGTACGCTTCATCATGGGACATT  600

seq1  CTCACCTCTTCTCCCACGAGCTCTCTTCTGACTGATGATTCCCTGATCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTTCTCCCACGAGCTCTCTTCTGACTGATGATTCCCTGATCCG  650

seq1  TGAAAGGAAAATTGGATCAAGGACTACAAACTGTTTTCATTGAAAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAAATTGGATCAAGGACTACAAACTGTTTTCATTGAAAACAGG  700

seq1  TTGGTTAAGCTATTGAGCCAGTCTGCCCAGACATGAGTCACCGGCAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAAGCTATTGAGCCAGTCTGCCCAGACATGAGTCACCGGCAGTTA  750

seq1  AAGCCAGGTTAAAGGTAATAATATTGCTGGAATACAGCCTTTTAGGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTTAAAGGTAATAATATTGCTGGAATACAGCCTTTTAGGGCAA  800

seq1  GCGTTCAACAAAAGCAGGGCTAATTAACAAAGGGTGGTGGTGATGCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCAACAAAAGCAGGGCTAATTAACAAAGGGTGGTGGTGATGCTGGG  850

seq1  TGGTGGGACCTCAAGCAATGGGAGACCTGGAGGCCAAACTCAGTCCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGACCTCAAGCAATGGGAGACCTGGAGGCCAAACTCAGTCCAGAC  900

seq1  AGATCTTATT-GGACCTGTGTGAGGTATTTTTAAATATGATTAGCTGGTG  949
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  AGATCTTATTGGGACCTGTGTGAGGTA-TTTTAAATATGATTAGCTGGTG  949

seq1  AATTTGAAAATCAAATTTCT-GGTTTGGGTTGAAAATGTTGGCAACACTC  998
      |||||| ||||| ||||||| ||||||||||| |||||||||| ||||||
seq2  AATTTG-AAATC-AATTTCTGGGTTTGGGTTG-AAATGTTGGC-ACACTC  995

seq1  CTAGAATCCTGCCTGGTAAAAGAAATAAGGTTTCCCACTCGTTATTTCCC  1048
      ||||||||||| ||||| ||||||   |||||||||||||| ||||  ||
seq2  CTAGAATCCTG-CTGGT-AAAGAA--TAGGTTTCCCACTCG-TATT--CC  1038

seq1  TACAGCCTGGCCCACAGGACCCAGGGTTTGCAACTCTTGTTTCTTGGGGG  1098
      ||||||   ||||||| ||||   ||||||| |||| |||||| ||||||
seq2  TACAGC--TGCCCACA-GACC--AGGTTTGC-ACTC-TGTTTC-TGGGGG  1080

seq1  TTTAGAGC  1106
      ||||||||
seq2  TTTAGAGC  1088

seq1: chr8_3469139_3469633
seq2: B6Ng01-297I20.g_216_440 (reverse)

seq1  ATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAACATATA  50
      |||||||||||||||||||||| ||||| || ||||||||||        
seq2  ATATATATATGTGTGTGTGTGTTTGTGTTTGAGTGTGTGTAT--------  42

seq1  TATATAATATATATAGTGTATAACAATAAATAATATGTATATATTATTTA  100
                     |||| |        |     || ||| ||   |||
seq2  ---------------GTGTGT-------GAGTGCGTGCATACATGTGTTA  70

seq1  TTATATAT-ATAATATATGTGTGTATAACATATATTATATATATATATA-  148
       | | | | |  || | |||| |||||        | ||||||| |||| 
seq2  GTGTGTGTGAGCATGTGTGTGAGTATA--------TGTATATATGTATAT  112

seq1  GTGTATAACAATAAATAATTTTTTTAAAAAGAGGGAAAAAGAAAGAAAGG  198
      | || ||                                           
seq2  GCGTGTA-------------------------------------------  119

seq1  AAAGGAAAAAGAAAAGACCCAGAATCAAGCAAAGAAATTATTTCACTCAG  248
                                                 |||    
seq2  -------------------------------------------CAC----  122

seq1  GTCAAATTATTTCACTCAGGTCTGATATGGTGAAGCAGTGAGTTTATTGA  298
              || |  ||   || ||     |||     ||||||       
seq2  --------ATGTGCCT---GTGTG----TGTG----TGTGAGT-------  146

seq1  GGCTGCTTAAGGGAGCAGGGTAACGCAAAAAATCTCTAGAAAGCCACCCC  348
                                     || | || |          
seq2  -------------------------------ATGTGTATA----------  155

seq1  AGACTGGAGGATGATTGAGAGAGCTGCATTCGTAAAGCTCAGCTGGTAGG  398
                     || | ||| | |||  || ||  |           
seq2  ---------------TGTGTGAG-TACATGTGTTAATGT-----------  178

seq1  CAGCCTAGCTATTCAGACAGTGTCCTCTCCCCATCTGCTCTTTGTGTGTT  448
                         ||||         || ||   ||  ||||||
seq2  -------------------GTGT---------ATGTG---TTCATGTGTT  197

seq1  TATGTGTGTGTGCATGTATGCACATGCAGGTGCTGTGTGCTCATGTG  495
      ||||||||||            ||||||       ||||||||||||
seq2  TATGTGTGTG------------CATGCA-------TGTGCTCATGTG  225