MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-298J17
Chromosome	19 (Build37)
Map Location	57,509,595 - 57,650,683
singlet/doublet	doublet
Overlap gene	Trub1
Upstream gene	Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540
Downstream gene	LOC100043038, Atrnl1, Gfra1, LOC100043503, 1700011F14Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Casp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12369 MGI:109383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930023K05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226245 MGI:2443041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dclre1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55947 MGI:1930042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nhlrc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66866 MGI:1914116
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adrb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11554 MGI:87937
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629643 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629643 MGI:3648860
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins

name	A630007B06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213993 MGI:2445022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700010L13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75628 MGI:1922878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tdrd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83561 MGI:1933218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	Vwa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240675 MGI:2684334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Afap1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226250 MGI:2147658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ablim1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226251 MGI:1194500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668259 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668259 MGI:3644656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	AI450540 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226252 MGI:2147545
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trub1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72133 MGI:1919383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100043038 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Atrnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226255 MGI:2147749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gfra1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14585 MGI:1100842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043503 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins pseudo : _no_value

name	1700011F14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75645 MGI:1922895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Casp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891757 GeneID:12369 MGI:109383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caspase 7 transcript_id : NM_007611.2

name	9930023K05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803052 GeneID:226245 MGI:2443041
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9930023K05 gene transcript_id : NM_172641.2

name	Dclre1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145468 GeneID:55947 MGI:1930042
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) transcript_id : NM_018831.3

name	Nhlrc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384823 GeneID:66866 MGI:1914116
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NHL repeat containing 2 transcript_id : NM_025811.2

name	Adrb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680665 GeneID:11554 MGI:87937
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adrenergic receptor, beta 1 transcript_id : NM_007419.1

name	EG629643 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270580 GeneID:629643 MGI:3648860
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 5 Proteins product : predicted gene, EG629643 transcript_id : XM_894554.2

name	A630007B06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:25072200 GeneID:213993 MGI:2445022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A630007B06 gene transcript_id : NM_170757.1

name	1700010L13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270523 GeneID:75628 MGI:1922878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700010L13 gene transcript_id : XM_001479353.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355695 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_001002238.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355699 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_001002240.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355697 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_001002241.1

name	Tdrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475714 GeneID:83561 MGI:1933218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 1 transcript_id : NM_031387.2

name	Vwa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42741660 GeneID:240675 MGI:2684334
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : von Willebrand factor A domain containing 2 transcript_id : NM_172840.2

name	Afap1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122606 GeneID:226250 MGI:2147658
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin filament associated protein 1-like 2 transcript_id : NM_146102.1

name	Ablim1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38016177 GeneID:226251 MGI:1194500
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-binding LIM protein 1 transcript_id : NM_178688.2

name	EG668259 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405995 GeneID:668259 MGI:3644656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG668259 transcript_id : XM_001004102.1

name	AI450540 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380140 GeneID:226252 MGI:2147545
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI450540 transcript_id : NM_145505.3

name	Trub1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754011 GeneID:72133 MGI:1919383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TruB pseudouridine (psi) synthase homolog 1 (E. coli) transcript_id : NM_028115.2

name	Trub1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353903 GeneID:72133 MGI:1919383
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TruB pseudouridine (psi) synthase homolog 1 (E. coli) transcript_id : NM_029839.2

name	LOC100043038 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270527 GeneID:100043038
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Sm protein G transcript_id : XM_001479390.1

name	Atrnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56699441 GeneID:226255 MGI:2147749
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : attractin like 1 transcript_id : NM_181415.3

name	Gfra1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328183 GeneID:14585 MGI:1100842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glial cell line derived neurotrophic factor family receptor alpha 1 transcript_id : NM_010279.2

name	1700011F14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205447 GeneID:75645 MGI:1922895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700011F14 gene transcript_id : NM_029372.2

name	Casp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680850 CCDS:CCDS29915.1 GeneID:12369 MGI:109383
definition	GO_function : GO:0030693 - caspase activity [Evidence IDA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007507 - heart development [Evidence IGI]; GO:0006917 - induction of apoptosis [Evidence IEA] [Evidence IGI]; GO:0001836 - release of cytochrome c from mitochondria [Evidence IGI]; GO:0009411 - response to UV [Evidence IGI] codon_start : 1 product : caspase 7 protein_id : NP_031637.1

name	9930023K05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369924 CCDS:CCDS29916.1 GeneID:226245 MGI:2443041
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC226245 protein_id : NP_766229.1

name	Dclre1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145469 CCDS:CCDS29917.1 GeneID:55947 MGI:1930042
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0006289 - nucleotide-excision repair [Evidence IMP]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : DNA cross-link repair 1A, PSO2 homolog protein_id : NP_061301.2

name	Nhlrc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789158 CCDS:CCDS29918.1 GeneID:66866 MGI:1914116
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA] codon_start : 1 product : NHL repeat containing 2 protein_id : NP_080087.1

name	Adrb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680666 CCDS:CCDS29919.1 GeneID:11554 MGI:87937
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IMP] GO_function : GO:0004940 - beta1-adrenergic receptor activity [Evidence IMP] [Evidence IDA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0050873 - brown fat cell differentiation [Evidence IGI]; GO:0002024 - diet induced thermogenesis [Evidence IGI]; GO:0042596 - fear response [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IMP]; GO:0031649 - heat generation [Evidence IGI]; GO:0001997 - increased strength of heart contraction by epinephrine-norepinephrine [Evidence IMP] [Evidence IDA]; GO:0040015 - negative regulation of body size [Evidence IGI]; GO:0002025 - norepinephrine-epinephrine vasodilation during regulation of blood pressure [Evidence IGI] [Evidence IMP]; GO:0001996 - positive regulation of heart contraction rate by epinephrine-norepinephrine [Evidence IMP]; GO:0009409 - response to cold [Evidence IGI]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : beta 1-AR; cardiac beta adrenergic receptor product : adrenergic receptor, beta 1 protein_id : NP_031445.1

name	EG629643 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82998772 GeneID:629643 MGI:3648860
definition	codon_start : 1 product : similar to macrophage migration inhibitory factor protein_id : XP_899647.1

name	A630007B06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25072201 CCDS:CCDS29921.1 GeneID:213993 MGI:2445022
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : oocyte-testis gene 1 protein_id : NP_739563.1

name	1700010L13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270524 GeneID:75628 MGI:1922878
definition	codon_start : 1 product : hypothetical protein LOC75628 protein_id : XP_001479403.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355696 CCDS:CCDS29922.1 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : tudor domain containing 1 isoform 1 protein_id : NP_001002238.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355700 CCDS:CCDS29922.1 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : tudor domain containing 1 isoform 2 protein_id : NP_001002240.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355698 CCDS:CCDS29922.1 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : tudor domain containing 1 isoform 3 protein_id : NP_001002241.1

name	Tdrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13878217 GeneID:83561 MGI:1933218
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 4 is encoded by transcript variant 4 product : tudor domain containing 1 isoform 4 protein_id : NP_113564.1

name	Vwa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42741661 CCDS:CCDS29923.1 GeneID:240675 MGI:2684334
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] GO_function : GO:0042802 - identical protein binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : VWA-like domains, matrilins and collagens product : von Willebrand factor A domain containing 2 protein_id : NP_766428.2

name	Afap1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122607 CCDS:CCDS29924.1 GeneID:226250 MGI:2147658
definition	codon_start : 1 product : actin filament associated protein 1-like 2 protein_id : NP_666214.1

name	Ablim1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38016178 GeneID:226251 MGI:1194500
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : actin-binding double zinc finger protein product : actin-binding LIM protein 1 protein_id : NP_848803.2

name	EG668259 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94405996 GeneID:668259 MGI:3644656
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001004102.1

name	AI450540 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542081 CCDS:CCDS29925.1 GeneID:226252 MGI:2147545
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC226252 protein_id : NP_663480.2

name	Trub1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312414 CCDS:CCDS29926.1 GeneID:72133 MGI:1919383
definition	GO_function : GO:0004730 - pseudouridylate synthase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : TruB pseudouridine (psi) synthase homolog 1 isoform 1 protein_id : NP_082391.1

name	Trub1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23943926 CCDS:CCDS29927.1 GeneID:72133 MGI:1919383
definition	GO_function : GO:0004730 - pseudouridylate synthase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2 product : TruB pseudouridine (psi) synthase homolog 1 isoform 2 protein_id : NP_084115.1

name	LOC100043038 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270528 GeneID:100043038
definition	codon_start : 1 product : similar to Sm protein G protein_id : XP_001479440.1

name	Atrnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56699442 CCDS:CCDS29928.1 GeneID:226255 MGI:2147749
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IPI] codon_start : 1 exception : mismatches in translation note : attractin-like protein product : attractin-like 1 protein_id : NP_852080.2

name	Gfra1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753976 GeneID:14585 MGI:1100842
definition	GO_component : GO:0019898 - extrinsic to membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence TAS] GO_process : GO:0009653 - morphogenesis [Evidence TAS]; GO:0007399 - nervous system development [Evidence IMP]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence TAS] codon_start : 1 note : GDNFR-alpha; GFR alpha-1 product : glial cell line derived neurotrophic factor family receptor alpha 1 protein_id : NP_034409.1

name	1700011F14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037425 GeneID:75645 MGI:1922895
definition	codon_start : 1 product : hypothetical protein LOC75645 protein_id : NP_083648.1

name	LOC100043503 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270581 GeneID:100043503
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins product : similar to ribosomal protein L30 pseudo : _no_value transcript_id : XR_034811.1

clone name	MSMg01-157D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489P15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-338H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528E16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-502P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075D09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-298J17.b	B6Ng01-298J17.g
ACC	GA093670	GA093671
length	1,197	916
definition	B6Ng01-298J17.b	B6Ng01-298J17.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(57,509,595 - 57,510,770)	(57,649,768 - 57,650,683)
sequence	gaattcaaaacccgaaagctcaaataaaaatctttatgggtggatcgaga agcagaagggcaaatacccctaacattgaagtacatggatatcagccatg gcgagaaacatgtagcctaaccttgccatgtgctgaaggccttgtctgca ttaagacacaccccttacaaggtagacagacacgggatagttaagtacca cgagactcccattcatttttggttacacacacacacacacacacacacac acacacacacacacctttgtagtaacccacttggcagccaacttctttta cctactatgcgcacacatccctctccacatgttgcgtgaagcttcactct gctgcctatgctctgagaacagaccctgctgccagtcctgcccagcttcc ctctaacccatggataaaacacacacacacacacacacacacacacacac acacacacaccgagttgttcagtttcaacttgccttttgacacaattgct gggccttacttatttcccacttggaaaagtgtgcccttatcaatactctt agctccacacctctccacctgccctaaactttagttgatcagttacatcc agttcttgctaaccactgaccaccagtctgcaaaagcggcctgtgtggcg actccattttgagatctaacatggctgcccaacttttctccatcagaacc ctgatgaactctcctctcacctccttgcacccttctcttgccccctggat ctggacgtccagcctattccttccacccagtcattggcccatggcttctt tactgacaggtcaagaacaattggggaacaggactgcccctacatccaca caaggcacctagtaacctgagagcccctctaccccctctacatcggggct acagatgtagtatggtagtatgaataccctggccaacaatcaaatctagt ttctatgccagtgtactaagggcacaaagactaggaacacagaactcagt gtatgtagagaaaggtgaaagtgtgccctctcactgcttgggaataaata ctcatcttatgcaaactgggaatgtgtgtatgaattaaaatcagatgcaa tatgttacagctgggaaaaatgaatttatggtagcctaggccttacctta cacctaaggttaaaccacccaagtcagcctctcttatatataaccgg	gaattctttacacacgagtcgtcaggcaaaggcttctgtatctcgttgtc caatgccccttgatatgtaagccaagagccttaatgcacataaaacattt atactcaagaagcacagctctcagtaatagacagatacgtggccgcatag ctgagggcaacatcagagggaactatttgtgaatgacttacagggaaatt gcccaaattatcagtggattcaaagcaactatgcagtgaaactatgggct tgtttaaaaagcaaaacaaagaggcaaagtttatctgaaaagctgaccct tctcatttctctctcatagttcaccacaggaactggggctcccgggggtg ggggcttgctgaactgacagaatgcttagtacttcaggaggtggtttggg gattcaggtacttgcattcctgagggcatccacatagaaagccaagaggg tcatttcagaggggaggctggccacacagaagtggtggcttcctcttctg agactgtatcacacatgagtatatctctcaggctgttgctgatgccatga cttgagtatcagaaagtgggtaattcataaatgaatgaagtctgatctgc tcaagatcagatgggggaggggggagagactggcccatattcagccatac ttaacaaatgaactccatggacgggacagtgtcataaaacaccttctcag acctttaggaggatatgcagactgtccaaaatacagctctccaccccacc ccaccttcaggaggcctcactgcagtgtggaagtaactttagttccaaaa tgtaaacacctagccacatatccgtttctagagagcctattctgaattgg gtcacttgctttctgagtgttggcctgcgctcagatgaacaactctggga gcctgactcattggct
quality values	Open. Hide. 49 15 21 32 58 33 20 45 62 62 52 62 62 62 49 62 62 62 62 62 47 42 62 62 62 62 62 62 62 62 59 59 51 45 28 45 35 38 49 33 40 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 59 62 62 59 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 54 62 62 62 62 62 62 62 54 62 62 62 62 43 62 62 62 62 62 52 62 62 62 62 62 62 62 52 52 62 49 52 48 54 58 54 48 58 47 47 54 58 58 54 52 54 54 58 52 58 54 58 54 54 54 52 48 52 48 54 52 54 54 58 58 54 54 58 54 58 54 54 58 58 44 54 58 54 48 54 54 54 58 58 58 58 58 58 41 58 58 54 54 52 54 52 51 54 58 54 53 50 49 50 45 48 48 58 51 49 58 51 58 58 58 49 58 58 58 54 50 46 50 49 58 40 58 45 49 52 51 54 51 41 58 51 58 52 51 54 54 53 53 54 58 49 41 48 44 42 49 52 53 50 41 26 24 31 34 52 46 37 46 53 53 51 54 44 40 50 58 58 50 50 44 24 14 42 39 43 40 58 50 50 39 29 50 41 39 41 41 50 30 51 54 51 50 52 51 33 39 39 52 40 50 50 52 52 49 51 50 39 51 49 52 54 41 25 51 40 54 32 38 49 53 38 41 49 31 52 50 51 35 54 39 41 44 50 40 54 47 27 52 53 52 31 54 53 47 40 49 42 41 53 37 33 26 42 35 37 51 39 44 46 37 40 31 51 40 52 53 40 53 38 44 47 41 19 54 54 47 47 31 53 35 27 28 34 31 53 36 41 29 31 42 40 34 31 36 31 27 32 40 32 40 23 45 39 42 29 53 33 32 51 34 33 29 34 31 29 31 31 31 26 29 45 33 26 26 45 51 26 32 51 33 36 51 37 31 34 31 42 32 26 12 8 18 15 30 28 41 31 41 33 31 25 32 30 31 32 46 41 29 27 29 20 19 14 31 27 26 29 41 30 41 41 37 31 31 32 19 26 27 24 21 32 28 27 25 9 14 25 15 32 24 20 31 31 24 32 33 28 27 32 25 31 36 25 41 21 25 48 48 32 28 30 26 17 14 46 41 46 31 32 34 34 32 43 27 37 19 10 44 48 33 21 31 33 31 31 23 37 29 30 20 27 27 31 20 20 25 16 13 32 31 32 32 27 28 30 26 25 24 25 44 31 17 23 29 8 11 31 22 17 17 17 31 33 32 44 23 32 32 17 24 24 32 48 42 33 31 19 19 21 17 20 15 21 15 22 25 31 31 32 12 21 14 43 30 9 18 21 26 48 25 15 17 13 33 24 5 29 18 21 32 15 31 18 21 25 25 20 21 27 27 21 17 37 28 22 24 32 22 15 18 33 15 20 47 8 13 10 5 7 23 47 27 24 24 28 15 28 28 38 28 24 16 8 9 9 16 27 28 20 13 23 8 28 5 20 5 5 11 40 18 10 4 7 8 11 16 14 13 10 9 6 10 16 16 28 40 20 4 14 16 32 13 13 13 20 10 7 7 7 13 12 16 22 13 7 14 10 7 15 22 23 14 10 14 7 5 2 1 3 5 7 5 9 4 5 12 8 14 5 13 8 21 10 5 12 14 6 11 25 28 25 16 10 8 7 13 7 22 5 6 4 5 7 8 10 12 15 20 14 23 4 6 15 9 16 5 11 8 5 22 17 4 6 4 4 9 8 8 15 5 7 5 3 5 4 3 4 4 4 10 23 7 2 2 2 2 2 9 10 9 6 20 9 6 16 5 5 13 9 8 7 5 5 12 13 12 11 16 7	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr19_57509595_57510770
seq2: B6Ng01-298J17.b_45_1241

seq1  GAATTCAAAACCCGAAAGCTCAAATAAAAATCTTTATGGGTGGATCGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCCGAAAGCTCAAATAAAAATCTTTATGGGTGGATCGAGA  50

seq1  AGCAGAAGGGCAAATACCCCTAACATTGAAGTACATGGATATCAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGGGCAAATACCCCTAACATTGAAGTACATGGATATCAGCCATG  100

seq1  GCGAGAAACATGTAGCCTAACCTTGCCATGTGCTGAAGGCCTTGTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAAACATGTAGCCTAACCTTGCCATGTGCTGAAGGCCTTGTCTGCA  150

seq1  TTAAGACACACCCCTTACAAGGTAGACAGACACGGGATAGTTAAGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACACACCCCTTACAAGGTAGACAGACACGGGATAGTTAAGTACCA  200

seq1  CGAGACTCCCATTCATTTTTGGTTACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACTCCCATTCATTTTTGGTTACACACACACACACACACACACACAC  250

seq1  ACACACACACACACCTTTGTAGTAACCCACTTGGCAGCCAACTTCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACCTTTGTAGTAACCCACTTGGCAGCCAACTTCTTTTA  300

seq1  CCTACTATGCGCACACATCCCTCTCCACATGTTGCGTGAAGCTTCACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATGCGCACACATCCCTCTCCACATGTTGCGTGAAGCTTCACTCT  350

seq1  GCTGCCTATGCTCTGAGAACAGACCCTGCTGCCAGTCCTGCCCAGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTATGCTCTGAGAACAGACCCTGCTGCCAGTCCTGCCCAGCTTCC  400

seq1  CTCTAACCCATGGATAAAACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCCATGGATAAAACACACACACACACACACACACACACACACAC  450

seq1  ACACACACACCGAGTTGTTCAGTTTCAACTTGCCTTTTGACACAATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACCGAGTTGTTCAGTTTCAACTTGCCTTTTGACACAATTGCT  500

seq1  GGGCCTTACTTATTTCCCACTTGGAAAAGTGTGCCCTTATCAATACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTACTTATTTCCCACTTGGAAAAGTGTGCCCTTATCAATACTCTT  550

seq1  AGCTCCACACCTCTCCACCTGCCCTAAACTTTAGTTGATCAGTTACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACACCTCTCCACCTGCCCTAAACTTTAGTTGATCAGTTACATCC  600

seq1  AGTTCTTGCTAACCACTGACCACCAGTCTGCAAAAGCGGCCTGTGTGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGCTAACCACTGACCACCAGTCTGCAAAAGCGGCCTGTGTGGCG  650

seq1  ACTCCATTTTGAGATCTAACATGGCTGCCCAACTTTTCTCCATCAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTTGAGATCTAACATGGCTGCCCAACTTTTCTCCATCAGAACC  700

seq1  CTGATGAACTCTCCTCTCACCTCCTTGCACCCTTCTCTTGCCCCCTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAACTCTCCTCTCACCTCCTTGCACCCTTCTCTTGCCCCCTGGAT  750

seq1  CTGGACGTCCAGCCTATTCCTTCCACCCAGTCATTGGCCCATGGCTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGTCCAGCCTATTCCTTCCACCCAGTCATTGGCCCATGGCTTCTT  800

seq1  TACTGACAGGTCAAGAACAATTGGGGAACAGGACTGCCCCTACATCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACAGGTCAAGAACAATTGGGGAACAGGACTGCCCCTACATCCACA  850

seq1  CAAGGCACCTAGTAACCTGAGAGCCCCTCTACCCCCTCTACATC-GGGCT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGGCACCTAGTAACCTGAGAGCCCCTCTACCCCCTCTACATCGGGGCT  900

seq1  ACAGATGTAGTATGGTAGTATGAATACCCTGG-CAACAATCAAATCTAGT  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAGATGTAGTATGGTAGTATGAATACCCTGGCCAACAATCAAATCTAGT  950

seq1  TTCTATGCCAGTGTACTAA-GGCACAAAGACTAGGAACACAGAACTCAGT  997
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTATGCCAGTGTACTAAGGGCACAAAGACTAGGAACACAGAACTCAGT  1000

seq1  GTATGTAGAGAAAGGTGAAAGTGTGCCCTCTCACTGCTTGG--ATAAATA  1045
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  GTATGTAGAGAAAGGTGAAAGTGTGCCCTCTCACTGCTTGGGAATAAATA  1050

seq1  CTCATCTTATGCAAAACTGG--ATGTGTGTATG-ATTAAAATCAGAAGGC  1092
      |||||||||||| |||||||  ||||||||||| |||||||||||| |  
seq2  CTCATCTTATGC-AAACTGGGAATGTGTGTATGAATTAAAATCAGATGCA  1099

seq1  ATATG-TACAGCTGG--AAAATGA--TTAT-GTAGCCTAAGC--TA-CTT  1133
      ||||| |||||||||  |||||||  |||| |||||||| ||  || |||
seq2  ATATGTTACAGCTGGGAAAAATGAATTTATGGTAGCCTAGGCCTTACCTT  1149

seq1  ACACTAAAGTAAAAACCACCCAAGTCAG-----CTTCTATATAACCGG  1176
      ||||  |||   ||||||||||||||||     ||| |||||||||||
seq2  ACACCTAAGGTTAAACCACCCAAGTCAGCCTCTCTTATATATAACCGG  1197

seq1: chr19_57649768_57650683
seq2: B6Ng01-298J17.g_67_982 (reverse)

seq1  AGCCACTGAGTCAGGCTCCCAGAGTTCGTCATCTGAGCGCAGGCCAAACA  50
      ||||| ||||||||||||||||||||  ||||||||||||||||| ||||
seq2  AGCCAATGAGTCAGGCTCCCAGAGTTGTTCATCTGAGCGCAGGCC-AACA  49

seq1  CTCAGAAAGCAAGTGACCCAATTCAGAATAGGCTCTCTAGAAACGGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGCAAGTGACCCAATTCAGAATAGGCTCTCTAGAAACGGATAT  99

seq1  GTGGCTAGGTGTTTACATTTTGGAACTAAAGTTACTTCCACACTGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGGTGTTTACATTTTGGAACTAAAGTTACTTCCACACTGCAGTG  149

seq1  AGGCCTCCTGAAGGTGGGGTGGGGTGGAGAGCTGTATTTTGGACAGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCTGAAGGTGGGGTGGGGTGGAGAGCTGTATTTTGGACAGTCTG  199

seq1  CATATCCTCCTAAAGGTCTGAGAAGGTGTTTTATGACACTGTCCCGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTCCTAAAGGTCTGAGAAGGTGTTTTATGACACTGTCCCGTCCA  249

seq1  TGGAGTTCATTTGTTAAGTATGGCTGAATAT-GGCCAGTCTCTCCCCCCT  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGAGTTCATTTGTTAAGTATGGCTGAATATGGGCCAGTCTCTCCCCCCT  299

seq1  CCCCCATCTGATCTTGAGCAGATCAGACTTCATTCATTTATGAATTACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTGATCTTGAGCAGATCAGACTTCATTCATTTATGAATTACCC  349

seq1  ACTTTCTGATACTCAAGTCATGGCATCAGCAACAGCCTGAGAGATATACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGATACTCAAGTCATGGCATCAGCAACAGCCTGAGAGATATACT  399

seq1  CATGTGTGATACAGTCTCAGAAGAGGAAGCCACCACTTCTGTGTGGCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGATACAGTCTCAGAAGAGGAAGCCACCACTTCTGTGTGGCCAG  449

seq1  CCTCCCCTCTGAAATGACCCTCTTGGCTTTCTATGTGGATGCCCTCAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCTGAAATGACCCTCTTGGCTTTCTATGTGGATGCCCTCAGGA  499

seq1  ATGCAAGTACCTGAATCCCCAAACCACCTCCTGAAGTACTAAGCATTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGTACCTGAATCCCCAAACCACCTCCTGAAGTACTAAGCATTCTG  549

seq1  TCAGTTCAGCAAGCCCCCACCCCCGGGAGCCCCAGTTCCTGTGGTGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCAGCAAGCCCCCACCCCCGGGAGCCCCAGTTCCTGTGGTGAACT  599

seq1  ATGAGAGAGAAATGAGAAGGGTCAGCTTTTCAGATAAACTTTGCCTCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAGAAATGAGAAGGGTCAGCTTTTCAGATAAACTTTGCCTCTTT  649

seq1  GTTTTGCTTTTTAAACAAGCCCATAGTTTCACTGCATAGTTGCTTTGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTTTTAAACAAGCCCATAGTTTCACTGCATAGTTGCTTTGAAT  699

seq1  CCACTGATAATTTGGGCAATTTCCCTGTAAGTCATTCACAAATAGTTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATAATTTGGGCAATTTCCCTGTAAGTCATTCACAAATAGTTCCC  749

seq1  TCTGATGTTGCCCTCAGCTATGCGGCCACGTATCTGTCTATTACTGAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTGCCCTCAGCTATGCGGCCACGTATCTGTCTATTACTGAGAG  799

seq1  CTGTGCTTCTTGAGTATAAATGTTTTATGTGCATTAAGGCTCTTGGCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTCTTGAGTATAAATGTTTTATGTGCATTAAGGCTCTTGGCTTA  849

seq1  CATATCAAGGGGCATTGGACAACGAGATACAGAAGCCTTTGCCTGACGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAGGGGCATTGGACAACGAGATACAGAAGCCTTTGCCTGACGAC  899

seq1  TCGTGTGTAAAGAATTC  916
      |||||||||||||||||
seq2  TCGTGTGTAAAGAATTC  916

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information