BAC Information

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BAC

Clone NameB6Ng01-301G10
Chromosome19 (Build37)
Map Location 47,485,365 - 47,641,799
singlet/doubletdoublet
Overlap geneSh3pxd2a, Obfc1
Upstream geneSufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070
Downstream geneSlk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301G10.bB6Ng01-301G10.g
ACCGA095722GA095723
length1,1631,050
definitionB6Ng01-301G10.b B6Ng01-301G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,640,651 - 47,641,799)(47,485,365 - 47,486,411)
sequence
gaattctggtttctagatttctcttcagcttgtgaaataagcatttgttt
ggcttctgtgtgccttgaaaaaaaaaaaccacaccatgaagaggatccaa
gtgggactgaaattcattttgtctgtcaggctgaatgcccagagtcccac
gtctacccaggcagtcccctttttactggctttaacagggtcaaagtctt
gccctgggcatcacagaacttccaggaggccttatttatctgctcactag
gtattgttctgttccacctaccagagtgacagagttttaaaatgctctcc
ccagtaggtgttagcgaggaagcagaaccagtggggcagctctcctgcac
tgctgggggagagataactcgaggtggctgctctgaaagcagcttggcag
tttcatagaaaaggaactctctatccaccatatgaccctgttactcctgc
acgtactgaagaggagaggagatgtacggccatgcgaaggtttgcctatg
aatgttcatattagctggaaagtagtcaccaacgaagaaatggataaaga
aatagccagatagtagtggtgcacgcccttaaacccccccgaattcagga
ggatgaggtctctgagtttaaggccattctggtctacatagagatccaag
gcagccagagctacatagtgagaccctgtcttgaaaagctaaaagaaaaa
aaaaaaaacaacaaaaaaaaacaaacaaaaaaacaaaacaaacaaaaaaa
aaaaaacaaacaaaaaaaaaaaaccaagaaagaaagaaaagaaagaagaa
ttttttttaaaaaaaaattgatggtattgctcataaaaaggagcactttt
tactttggcaatacaaaaagaatgagtgatagattacacacagagtacag
atgaacctcaaagaatgactgtgcgtgaaaaggcagctccttcttcctta
agagtccagcctcttcatacaggcagaatgggagattggaaatacaagca
caggtgagaaaagagccagagaactgggattttgactaagaagaggggtg
ggtatagcaatggggaggcctttcgagaggccaatggggaactttgggtg
acaagccagggtctgattggtggcgatagatccggaggccaaggcgttcc
acgatacgtcaac
gaattctcctggaaatgttctggacccacagcaatcaggcagcacagagc
ctgtactgaacctccttcagcacaaggccagccatccttcccctagcccc
tgcctgccctgcctccagatgtgaatacgccacagctggagaacctggtc
tgacaagcctgtcactgagacacaaagctgaactggagggaggggctggc
cacctccttcctcctcagccaggcaccacactcctgatgtgtgacccacc
acttctgcaaggcagtccacatcttccctggggagcctctagatccccca
ggtcccccaggtccaattccctccttatcaccacaatcaaccaatcagct
tgcccaaagagcacacttgaacagaaaaaagaaataacaaaaaggatgga
gaaaggggcttggattggtccttcagggaccccagtcactgttcaaggtg
cagtcctgagaacagcagtgcggacatcagctaagagcctggaagatgca
gcatcaccctgcacactgctacacctaaaccagtatctgcagaacggcct
gagtggttccacactctgcgaacttgaggaaccctaatgttcttcacccc
taaggattccatcagctctctaacaagtgacttgggagccgcccgtagac
aaagtcaagagctgcccggaggagtggaaactgaacacacctgcctttga
aggtggaagagggtgaagcccctctctgcacaccccataccccaccacca
ccacacacaaactctctctagaagtcactgacaaggattcccagctgaca
ctgttctagagaatggaaaaataaaaaaattaaagctatgggggctattt
cttctcctgaagttcccacgttgtggggaaaatcagagtaagcaaatggc
tgatgggataacaggctgagaacaagtgatttgaaggcaaggtagggcag
atgtggtcaaagagtctcactgacagacatagggacccatgtcctcattg
cttaaggggtccactgtaaagatgttggggaaggggggtatgaggagaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47640651_47641799
seq2: B6Ng01-301G10.b_47_1209 (reverse)

seq1  GTTGACATGTATCGTTGAACGCCTTGGCCTCTGTGAATCTATCGCCACC-  49
      ||||||  ||||||| |||||||||||||||   | ||||||||||||| 
seq2  GTTGAC--GTATCGTGGAACGCCTTGGCCTC--CGGATCTATCGCCACCA  46

seq1  ATCAGGGAACCT-GCTTGTCACCC-AAGGTCCCCATGCGCCTCTGGAAA-  96
      ||||  || ||| ||||||||||| ||| |||||||  |||||| |||| 
seq2  ATCA--GACCCTGGCTTGTCACCCAAAGTTCCCCATTGGCCTCTCGAAAG  94

seq1  GCCT-CCCTTTGCT-TTCCCA-CCCTCT--CTAGTCAAA--TCCAG-TCT  138
      |||| ||| ||||| | |||| ||||||   ||||||||   |||| |||
seq2  GCCTCCCCATTGCTATACCCACCCCTCTTCTTAGTCAAAATCCCAGTTCT  144

seq1  CT-GCTC-TTTCTCA-CTGTGCTTTGTATTT-CAATCTCC--ATCTG-CT  181
      || |||| ||||||| |||||| |||||||| ||||||||   |||| ||
seq2  CTGGCTCTTTTCTCACCTGTGC-TTGTATTTCCAATCTCCCATTCTGCCT  193

seq1  GTATGAAGAGGCTGGACTCTT-AGGGAGAAGGGGCTGCCTTTTTCACGCA  230
      ||||||||||||||||||||| ||| |||||| |||||| ||||||||||
seq2  GTATGAAGAGGCTGGACTCTTAAGGAAGAAGGAGCTGCC-TTTTCACGCA  242

seq1  CAGTCATTCTTTTGAGGTTCATCTGTACTCTTGTGTGT-ATCTATCACTC  279
      ||||||||| |||||||||||||||||||| ||||||| |||||||||||
seq2  CAGTCATTC-TTTGAGGTTCATCTGTACTC-TGTGTGTAATCTATCACTC  290

seq1  ATTC-TTTTGTATTGCC-AAGT-AAAAGTGCTCCTTTTTATGAGC-ATAC  325
      |||| |||||||||||| |||| |||||||||||||||||||||| ||||
seq2  ATTCTTTTTGTATTGCCAAAGTAAAAAGTGCTCCTTTTTATGAGCAATAC  340

seq1  CATC-ATTTTTTTTTAAAAAAATTCTTTCTTTCTTTTCTTTCTTTCTTGG  374
      |||| ||||||||||||||||| |  ||||||||||||||||||||||||
seq2  CATCAATTTTTTTTTAAAAAAAATTCTTCTTTCTTTTCTTTCTTTCTTGG  390

seq1  TTTTTTTTTTTTTGTTTGTTTTTTTTTTTTGTTTTGTTTTGTTTTTTTGT  424
       |||||||||||||||||||||||||||||  ||||||||||||||||| 
seq2  -TTTTTTTTTTTTGTTTGTTTTTTTTTTTTTGTTTGTTTTGTTTTTTTG-  438

seq1  TTTGTTTTTTTTTGTTGTTTTTTTTTTTTTCTTTTAGCTTTTCAAGACAG  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTGTTGTTTTTTTTTTTTTCTTTTAGCTTTTCAAGACAG  488

seq1  GGTCTCACTATGTAGCTCTGGCTGCCTTGGATCTCTATGTAGACCAGAAT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACTATGTAGCTCTGGCTGCCTTGGATCTCTATGTAGACCAGAAT  538

seq1  GGCCTTAAACTCAGAGACCTCATCCTCCTGAATTCGGGGGGGTTTAAGGG  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAAACTCAGAGACCTCATCCTCCTGAATTCGGGGGGGTTTAAGGG  588

seq1  CGTGCACCACTACTATCTGGCTATTTCTTTATCCATTTCTTCGTTGGTGA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACCACTACTATCTGGCTATTTCTTTATCCATTTCTTCGTTGGTGA  638

seq1  CTACTTTCCAGCTAATATGAACATTCATAGGCAAACCTTCGCATGGCCGT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCAGCTAATATGAACATTCATAGGCAAACCTTCGCATGGCCGT  688

seq1  ACATCTCCTCTCCTCTTCAGTACGTGCAGGAGTAACAGGGTCATATGGTG  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCTCTCCTCTTCAGTACGTGCAGGAGTAACAGGGTCATATGGTG  738

seq1  GATAGAGAGTTCCTTTTCTATGAAACTGCCAAGCTGCTTTCAGAGCAGCC  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAGTTCCTTTTCTATGAAACTGCCAAGCTGCTTTCAGAGCAGCC  788

seq1  ACCTCGAGTTATCTCTCCCCCAGCAGTGCAGGAGAGCTGCCCCACTGGTT  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGAGTTATCTCTCCCCCAGCAGTGCAGGAGAGCTGCCCCACTGGTT  838

seq1  CTGCTTCCTCGCTAACACCTACTGGGGAGAGCATTTTAAAACTCTGTCAC  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTCGCTAACACCTACTGGGGAGAGCATTTTAAAACTCTGTCAC  888

seq1  TCTGGTAGGTGGAACAGAACAATACCTAGTGAGCAGATAAATAAGGCCTC  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGGTGGAACAGAACAATACCTAGTGAGCAGATAAATAAGGCCTC  938

seq1  CTGGAAGTTCTGTGATGCCCAGGGCAAGACTTTGACCCTGTTAAAGCCAG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTTCTGTGATGCCCAGGGCAAGACTTTGACCCTGTTAAAGCCAG  988

seq1  TAAAAAGGGGACTGCCTGGGTAGACGTGGGACTCTGGGCATTCAGCCTGA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGGACTGCCTGGGTAGACGTGGGACTCTGGGCATTCAGCCTGA  1038

seq1  CAGACAAAATGAATTTCAGTCCCACTTGGATCCTCTTCATGGTGTGGTTT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAATGAATTTCAGTCCCACTTGGATCCTCTTCATGGTGTGGTTT  1088

seq1  TTTTTTTTCAAGGCACACAGAAGCCAAACAAATGCTTATTTCACAAGCTG  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAAGGCACACAGAAGCCAAACAAATGCTTATTTCACAAGCTG  1138

seq1  AAGAGAAATCTAGAAACCAGAATTC  1149
      |||||||||||||||||||||||||
seq2  AAGAGAAATCTAGAAACCAGAATTC  1163

seq1: chr19_47485365_47486411
seq2: B6Ng01-301G10.g_69_1118

seq1  GAATTCTCCTGGAAATGTTCTGGACCCACAGCAATCAGGCAGCACAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGAAATGTTCTGGACCCACAGCAATCAGGCAGCACAGAGC  50

seq1  CTGTACTGAACCTCCTTCAGCACAAGGCCAGCCATCCTTCCCCTAGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGAACCTCCTTCAGCACAAGGCCAGCCATCCTTCCCCTAGCCCC  100

seq1  TGCCTGCCCTGCCTCCAGATGTGAATACGCCACAGCTGGAGAACCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCTGCCTCCAGATGTGAATACGCCACAGCTGGAGAACCTGGTC  150

seq1  TGACAAGCCTGTCACTGAGACACAAAGCTGAACTGGAGGGAGGGGCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCCTGTCACTGAGACACAAAGCTGAACTGGAGGGAGGGGCTGGC  200

seq1  CACCTCCTTCCTCCTCAGCCAGGCACCACACTCCTGATGTGTGACCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTTCCTCCTCAGCCAGGCACCACACTCCTGATGTGTGACCCACC  250

seq1  ACTTCTGCAAGGCAGTCCACATCTTCCCTGGGGAGCCTCTAGATCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCAAGGCAGTCCACATCTTCCCTGGGGAGCCTCTAGATCCCCCA  300

seq1  GGTCCCCCAGGTCCAATTCCCTCCTTATCACCACAATCAACCAATCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCCAGGTCCAATTCCCTCCTTATCACCACAATCAACCAATCAGCT  350

seq1  TGCCCAAAGAGCACACTTGAACAGAAAAAAGAAATAACAAAAAGGATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAAGAGCACACTTGAACAGAAAAAAGAAATAACAAAAAGGATGGA  400

seq1  GAAAGGGGCTTGGATTGGTCCTTCAGGGACCCCAGTCACTGTTCAAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGCTTGGATTGGTCCTTCAGGGACCCCAGTCACTGTTCAAGGTG  450

seq1  CAGTCCTGAGAACAGCAGTGCGGACATCAGCTAAGAGCCTGGAAGATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGAGAACAGCAGTGCGGACATCAGCTAAGAGCCTGGAAGATGCA  500

seq1  GCATCACCCTGCACACTGCTACACCTAAACCAGTATCTGCAGAACGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCCTGCACACTGCTACACCTAAACCAGTATCTGCAGAACGGCCT  550

seq1  GAGTGGTTCCACACTCTGCGAACTTGAGGAACCCTAATGTTCTTCACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTCCACACTCTGCGAACTTGAGGAACCCTAATGTTCTTCACCCC  600

seq1  TAAGGATTCCATCAGCTCTCTAACAAGTGACTTGGGAGCCGCCCGTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTCCATCAGCTCTCTAACAAGTGACTTGGGAGCCGCCCGTAGAC  650

seq1  AAAGTCAAGAGCTGCCCGGAGGAGTGGAAACTGAACACACCTGCCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGAGCTGCCCGGAGGAGTGGAAACTGAACACACCTGCCTTTGA  700

seq1  AGGTGGAAGAGGGTGAAGCCCCTCTCTGCACACCCCATACCCCACCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAGAGGGTGAAGCCCCTCTCTGCACACCCCATACCCCACCACCA  750

seq1  CCACACACAAACTCTCTCTAGAAGTCACTGACAAGGATTTCCCAGCTGAC  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCACACACAAACTCTCTCTAGAAGTCACTGACAAGGA-TTCCCAGCTGAC  799

seq1  ACTGTTCTAGAGAATGGAAAAATAAAAAAATTAAAGCTAT-GGGGCTATT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGTTCTAGAGAATGGAAAAATAAAAAAATTAAAGCTATGGGGGCTATT  849

seq1  TCTTCTCCTGAAGTTCCCACGTTGTGGGGAAAATCAGAGTAAGCAAATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTGAAGTTCCCACGTTGTGGGGAAAATCAGAGTAAGCAAATGG  899

seq1  CTGATGGGATAACAGGCTGAG-ACAAGTGATTTGAAGGCAAGGTA-GGCA  947
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CTGATGGGATAACAGGCTGAGAACAAGTGATTTGAAGGCAAGGTAGGGCA  949

seq1  GATGTGGTCAAAGGAGGTCTCACTGACAGGACATA-GGACCCAAGGCCTC  996
      |||||||||||||   |||||||||||| |||||| ||||||| | ||||
seq2  GATGTGGTCAAAG--AGTCTCACTGACA-GACATAGGGACCCATGTCCTC  996

seq1  AGTGCTTAGGGGGTCCACTGT-AAGATG-TGGGGAAGGGGGTTA-GAGGA  1043
      | |||||| |||||||||||| |||||| |||||||||||| || |||||
seq2  ATTGCTTAAGGGGTCCACTGTAAAGATGTTGGGGAAGGGGGGTATGAGGA  1046

seq1  GAGA  1047
      ||||
seq2  GAGA  1050