BAC Information

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BAC

Clone NameB6Ng01-303E06
Chromosome19 (Build37)
Map Location 16,317,835 - 16,461,263
singlet/doubletdoublet
Overlap geneGnaq, LOC624438
Upstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, E030024N20Rik
Downstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303E06.bB6Ng01-303E06.g
ACCGA097109GA097110
length1,1731,125
definitionB6Ng01-303E06.b B6Ng01-303E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,317,835 - 16,318,981)(16,460,141 - 16,461,263)
sequence
gaattcattgtattctatatccttttctatacattctccctacctctttt
taactcatatatatcttttatttctacatatttattttgcatataggtgc
tctgttactcaagtgatcaggggaaggtgtcttctactttctatactaaa
agcatgtctatgaagttgtctggtgctttcatgcttttgtgtttctgttt
aattaataagagttaggaaaccattatttgtgggagaacagcatatgaaa
agtatccggaagccgtcagttgctttatgtgattgatgcctgctggtgtt
cccacggatcttccgtaaggaaaccatctgagtattccacctgctgtttc
acagagagtgcgggtggattctcagataagcttcaggatggtggtattat
aggtaattagaacttgtgggacagacatgagacaaaataataaaggactg
tattaaaaaaaaaaagaaaagaagaaagaaaaagattagagctgctgcta
cgagctgttccaggaaaggggcaaagctagcgacctgacagcaactgcac
gagaatgtgtgtaagacagacaaatagcaaaagcttgcagcagagtagtc
aagatagagaaaactgaagttgtagattattattggcatgctgactcaaa
tctgcttttttacctctggatattttgtatggatgaattggaaagttaag
gtttgaaacaagggcagataaagaaacagatgtagacataaaagcatcct
accttatttttttcatgagtttattttcttagtaattcttagcacgtaca
gtaatgagttttattagtatatttttcacgaatgtatattgtgtacttta
ctcagtttttccttgtgttgccttttccttctgccctttttactggtgct
tttataccacttcacatcgtttgcccttatgcgatgggaatgcaatgaga
agtgtgtgcttacttactgcgtttttcctttattcactccagcatctgct
aacggccttccagctgattccaatagtgtagctacaggtggagttagtgc
agcagtgcacactgaacgatgctcagtgtctgaatgtaaagacctttcat
gggaatattaacccaggaaggcatatggaagccttggtcgtatgtaattc
ctaatctcagaaactttttgaga
gaattctctgtgggtgggaactgccgtatcacacacaaaagggcgacatc
atctgtaaacggcacactcatgtgctgagtgactcatgagatggctgctt
gccttggtatgctgaggaaaggtttctgtggtctgtgttttgcttctgaa
taagacatgcccaagtcaccataacgctcatcacaagcctccattaccta
gagcatcgacaacaggaacacttgcaatcacaatagaagagaaagcatat
gagtaaactttgtttttgtacaaaactaagaagcccttcccgcccctcac
cccttcaataaaaccccaaacgagaaacaacaacaaaattagttttagct
tcattgactagtgtggatagagtaaggtgtgcaggcaccactgcagctag
ggtgatcaatgttttcccttctcagaagaagggactctgtcatgcacccc
aggatgtgcagtgaggccagacttcaactctgtgcagcagcaagctgcac
cctcaattcataaagacaacgtggccacctctccctgccttactcagcag
ctctgagcttggtatcagcacggctcagctccatccactacagctctatt
agacagaacagctcgcttccttaggacggttaacacttatgatcctggga
tgaggttttctctatacactgcaggccatcaaatgttacttttttcttct
tttttgtctttttgtgtttttaaatttttttgtttttattttttgttttg
tttgttttgtttttgtttttgttttttttgttttttttgttttttgctgc
accaaatttaaaggttgccctttcaggcaagcagtgggtctctagctgat
aaaacattttcctttagtggatcacaaatagctttctaaaactgcctttt
ctaataaaggccaccagagaggtaatgctaaactgtgcatttgccaaata
agaatatgaatcgtataaaagctcatattccaaccccagtcaatggcaaa
tgtctacaaagttggtctccgtgtttgttattaaaagctcttgacgattg
ctgtgtgttgctaatgaattaccttggatctagtcagcacacctctaact
cagaatgtgctatgaatttagacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16317835_16318981
seq2: B6Ng01-303E06.b_43_1215

seq1  GAATTCATTGTATTCTATATCCTTTTCTATACATTCTCCCTACCTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTATTCTATATCCTTTTCTATACATTCTCCCTACCTCTTTT  50

seq1  TAACTCATATATATCTTTTATTTCTACATATTTATTTTGCATATAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATATATATCTTTTATTTCTACATATTTATTTTGCATATAGGTGC  100

seq1  TCTGTTACTCAAGTGATCAGGGGAAGGTGTCTTCTACTTTCTATACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACTCAAGTGATCAGGGGAAGGTGTCTTCTACTTTCTATACTAAA  150

seq1  AGCATGTCTATGAAGTTGTCTGGTGCTTTCATGCTTTTGTGTTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCTATGAAGTTGTCTGGTGCTTTCATGCTTTTGTGTTTCTGTTT  200

seq1  AATTAATAAGAGTTAGGAAACCATTATTTGTGGGAGAACAGCATATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAAGAGTTAGGAAACCATTATTTGTGGGAGAACAGCATATGAAA  250

seq1  AGTATCCGGAAGCCGTCAGTTGCTTTATGTGATTGATGCCTGCTGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCGGAAGCCGTCAGTTGCTTTATGTGATTGATGCCTGCTGGTGTT  300

seq1  CCCACGGATCTTCCGTAAGGAAACCATCTGAGTATTCCACCTGCTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGATCTTCCGTAAGGAAACCATCTGAGTATTCCACCTGCTGTTTC  350

seq1  ACAGAGAGTGCGGGTGGATTCTCAGATAAGCTTCAGGATGGTGGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTGCGGGTGGATTCTCAGATAAGCTTCAGGATGGTGGTATTAT  400

seq1  AGGTAATTAGAACTTGTGGGACAGACATGAGACAAAATAATAAAGGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTAGAACTTGTGGGACAGACATGAGACAAAATAATAAAGGACTG  450

seq1  TATTAAAAAAAAAAAGAAAAGAAGAAAGAAAAAGATTAGAGCTGCTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAAAAAAAGAAAAGAAGAAAGAAAAAGATTAGAGCTGCTGCTA  500

seq1  CGAGCTGTTCCAGGAAAGGGGCAAAGCTAGCGACCTGACAGCAACTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGTTCCAGGAAAGGGGCAAAGCTAGCGACCTGACAGCAACTGCAC  550

seq1  GAGAATGTGTGTAAGACAGACAAATAGCAAAAGCTTGCAGCAGAGTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGTGTAAGACAGACAAATAGCAAAAGCTTGCAGCAGAGTAGTC  600

seq1  AAGATAGAGAAAACTGAAGTTGTAGATTATTATTGGCATGCTGACTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAGAAAACTGAAGTTGTAGATTATTATTGGCATGCTGACTCAAA  650

seq1  TCTGCTTTTTTACCTCTGGATATTTTGTATGGATGAATTGGAAAGTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTTACCTCTGGATATTTTGTATGGATGAATTGGAAAGTTAAG  700

seq1  GTTTGAAACAAGGGCAGATAAAGAAACAGATGTAGACATAAAAGCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAACAAGGGCAGATAAAGAAACAGATGTAGACATAAAAGCATCCT  750

seq1  ACCTTATTTTTTTCATGAGTTTATTTTCTTAGTAATTCTTAGCACGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTTTTTTCATGAGTTTATTTTCTTAGTAATTCTTAGCACGTACA  800

seq1  GTAATGAG-TTTATTAGTATA-TTTTCACGAATGTATATTGTGTACTTTA  848
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GTAATGAGTTTTATTAGTATATTTTTCACGAATGTATATTGTGTACTTTA  850

seq1  CTCAGTTTTTCCTTGTGTTGCCTTTTCCTTCTG-CCTTTTTACTGGTGCT  897
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAGTTTTTCCTTGTGTTGCCTTTTCCTTCTGCCCTTTTTACTGGTGCT  900

seq1  TTTATACCAC-TCACATCG-TTGCCCTTATGCGAT-GGAATGCAATGAGA  944
      |||||||||| |||||||| ||||||||||||||| ||||||||||||||
seq2  TTTATACCACTTCACATCGTTTGCCCTTATGCGATGGGAATGCAATGAGA  950

seq1  AGTGTGTGCTTACTTACTGCGTTTT--CCTTATTCACTCCAGCATCTGCT  992
      |||||||||||||||||||||||||  | |||||||||||||||||||||
seq2  AGTGTGTGCTTACTTACTGCGTTTTTCCTTTATTCACTCCAGCATCTGCT  1000

seq1  AACGGGCTTCCAGCTGATTCC-ATAGTGTAGCTACAG--TGAG-TAGTGC  1038
      ||||| ||||||||||||||| |||||||||||||||   ||| ||||||
seq2  AACGGCCTTCCAGCTGATTCCAATAGTGTAGCTACAGGTGGAGTTAGTGC  1050

seq1  AGCAGTGCACAC-GGACGATGCTCAAGTGTCTG-ATGTAAAGACC-TTCA  1085
      |||||||||||| | ||||||||| |||||||| ||||||||||| ||||
seq2  AGCAGTGCACACTGAACGATGCTC-AGTGTCTGAATGTAAAGACCTTTCA  1099

seq1  TGG--ATAT--ACCCA-GAAGCC--ATGGA--GCTTGGTCGTATGGTAAT  1126
      |||  ||||  ||||| |||| |  |||||   ||||||||||| |||||
seq2  TGGGAATATTAACCCAGGAAGGCATATGGAAGCCTTGGTCGTAT-GTAAT  1148

seq1  T-CTAATCTCAGA---CTTTTGAGA  1147
      | |||||||||||    ||||||||
seq2  TCCTAATCTCAGAAACTTTTTGAGA  1173

seq1: chr19_16460141_16461263
seq2: B6Ng01-303E06.g_67_1191 (reverse)

seq1  CTGTCTAAAATCATTTGCACATTCCTGAG-TAGAGGTGTGCTGACCTAAG  49
      ||||||||| ||| | ||||||| ||||| |||||||||||||||   ||
seq2  CTGTCTAAATTCA-TAGCACATT-CTGAGTTAGAGGTGTGCTGAC--TAG  46

seq1  ACCCAAAGGTAATTTCATAGCAAACACACACCATCCGTC-AGAGCTTTTA  98
      | || |||||||||   |||| |||||||| ||  |||| ||||||||||
seq2  ATCC-AAGGTAATTCATTAGC-AACACACAGCAATCGTCAAGAGCTTTTA  94

seq1  --TACAAACACGGAGACCAACTTTGTAGACCTTTTGCCATTTGACCTGGG  146
         |||||||||||||||||||||||||| | ||||||| |||| |||||
seq2  ATAACAAACACGGAGACCAACTTTGTAGA-CATTTGCCA-TTGA-CTGGG  141

seq1  GTTGGAATATGAGCTTTTATACGATTCATATTCTTATTTGGCAAATGCAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAATATGAGCTTTTATACGATTCATATTCTTATTTGGCAAATGCAC  191

seq1  AGTTTAGCATTACCTCTCTGGTGGCCTTTATTAG-AAAGGCAGTTTTAG-  244
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  AGTTTAGCATTACCTCTCTGGTGGCCTTTATTAGAAAAGGCAGTTTTAGA  241

seq1  AAGCTATTTGTGATCCACTAA--GGAAATGTTTTATCAGCTAGAGA-CCA  291
      |||||||||||||||||||||  | ||||||||||||||||||||| |||
seq2  AAGCTATTTGTGATCCACTAAAGGAAAATGTTTTATCAGCTAGAGACCCA  291

seq1  CTGCTTGCCTGAAAGGGCAACC-TTAAATTTGGTGCAGCAAAAAAC-AAA  339
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  CTGCTTGCCTGAAAGGGCAACCTTTAAATTTGGTGCAGCAAAAAACAAAA  341

seq1  AAAACAAAAAAAACAAAAACAAAAACAAAACAAACAAAACAAAAAATAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAACAAAAACAAAAACAAAACAAACAAAACAAAAAATAAA  391

seq1  AACAAAAAAATTTAAAAACACAAAAAGACAAAAAAGAAGAAAAAAGTAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAATTTAAAAACACAAAAAGACAAAAAAGAAGAAAAAAGTAAC  441

seq1  ATTTGATGGCCTGCAGTGTATAGAGAAAACCTCATCCCAGGATCATAAGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATGGCCTGCAGTGTATAGAGAAAACCTCATCCCAGGATCATAAGT  491

seq1  GTTAACCGTCCTAAGGAAGCGAGCTGTTCTGTCTAATAGAGCTGTAGTGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCGTCCTAAGGAAGCGAGCTGTTCTGTCTAATAGAGCTGTAGTGG  541

seq1  ATGGAGCTGAGCCGTGCTGATACCAAGCTCAGAGCTGCTGAGTAAGGCAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTGAGCCGTGCTGATACCAAGCTCAGAGCTGCTGAGTAAGGCAG  591

seq1  GGAGAGGTGGCCACGTTGTCTTTATGAATTGAGGGTGCAGCTTGCTGCTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGGCCACGTTGTCTTTATGAATTGAGGGTGCAGCTTGCTGCTG  641

seq1  CACAGAGTTGAAGTCTGGCCTCACTGCACATCCTGGGGTGCATGACAGAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTGAAGTCTGGCCTCACTGCACATCCTGGGGTGCATGACAGAG  691

seq1  TCCCTTCTTCTGAGAAGGGAAAACATTGATCACCCTAGCTGCAGTGGTGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTCTGAGAAGGGAAAACATTGATCACCCTAGCTGCAGTGGTGC  741

seq1  CTGCACACCTTACTCTATCCACACTAGTCAATGAAGCTAAAACTAATTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACCTTACTCTATCCACACTAGTCAATGAAGCTAAAACTAATTTT  791

seq1  GTTGTTGTTTCTCGTTTGGGGTTTTATTGAAGGGGTGAGGGGCGGGAAGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTCTCGTTTGGGGTTTTATTGAAGGGGTGAGGGGCGGGAAGG  841

seq1  GCTTCTTAGTTTTGTACAAAAACAAAGTTTACTCATATGCTTTCTCTTCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAGTTTTGTACAAAAACAAAGTTTACTCATATGCTTTCTCTTCT  891

seq1  ATTGTGATTGCAAGTGTTCCTGTTGTCGATGCTCTAGGTAATGGAGGCTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATTGCAAGTGTTCCTGTTGTCGATGCTCTAGGTAATGGAGGCTT  941

seq1  GTGATGAGCGTTATGGTGACTTGGGCATGTCTTATTCAGAAGCAAAACAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGCGTTATGGTGACTTGGGCATGTCTTATTCAGAAGCAAAACAC  991

seq1  AGACCACAGAAACCTTTCCTCAGCATACCAAGGCAAGCAGCCATCTCATG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAGAAACCTTTCCTCAGCATACCAAGGCAAGCAGCCATCTCATG  1041

seq1  AGTCACTCAGCACATGAGTGTGCCGTTTACAGATGATGTCGCCCTTTTGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCAGCACATGAGTGTGCCGTTTACAGATGATGTCGCCCTTTTGT  1091

seq1  GTGTGATACGGCAGTTCCCACCCACAGAGAATTC  1123
      ||||||||||||||||||||||||||||||||||
seq2  GTGTGATACGGCAGTTCCCACCCACAGAGAATTC  1125