BAC Information

Click to search

BAC

Clone NameB6Ng01-303N12
Chromosome19 (Build37)
Map Location 44,204,424 - 44,386,925
singlet/doubletdoublet
Overlap geneCwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk
Downstream geneScd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303N12.bB6Ng01-303N12.g
ACCGA097546GA097547
length1,076971
definitionB6Ng01-303N12.b B6Ng01-303N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,204,424 - 44,205,490)(44,385,960 - 44,386,925)
sequence
gaattcaccaaataaaatggctgacaaatacagtagtgttcttaacacac
actgaaaatacacactgaggattgtgacaagccggacccatgttcagatt
tcaaaatgtctgtctcacaactgtagctaaaaataaataggcagaggaca
gagagaaggcccaggcattaagagagagcactggctgctccttcagagga
tctgggtgcagaaccaacatggcagctcacaaaagtctgcaattccagtt
ccaggcgatctccaagagtgccaggaacacatttgttacacacatgtgta
ccaatagacccttatacagaaaataataaaaaatcattgtgaaaagcagg
gctggtaagatggcgcaaggaaaggtgcttgctttgcaatctagaacctg
ggttcaaactttagaacacacataaggtgaaagaagagaactaactcacc
aggttgtcccctgagcttcacactcacactgtggcaagtgcacagagaca
cacacggacacacacataacagtaaagcacggagacgagatacagttcag
tggcagacgacatatttgcaaacgtgtgaagccctgggtttgatcgccag
tgacataactaacaacataataataaatcttaaatcatattataaaagtt
ttcctcaacattcatcctgcctaaagaagtctcaggagtggagaaagcta
aaattgtttctgtgagggccacaactgcacagaggatcggaggcactggc
agactatggtgggaatggtgaagaaggcattcctaacaaaggaactccag
gggctttctgagatccatgaccacagagactgtgaaggggctgttttaga
ttataatgagctgagtaacgatcatgtcatgtacacagcagactaagtca
gacagtgggggagggaacaacagcaaagcttgacaactgtctttgtcctg
aaactgaagaaatgtagagggctatgagcagctttgagctggaatttaag
agtattcccttaaaacagaaaaaaaagaccaaaagggatgaaaaaacaca
gtgaatggacacttagaggacctgag
gaattcttaccctcaccctccacttctaaagaaaaagaaaaaagaaaaaa
agaaatcgtaagaatacagccaggcgtggttctgggcctgccatgccttt
gacaaccagttttctctcgtttgctgttcttgttcacaaagtctttcaag
gcctgaccctgactactcattgttctcagtggaaaatggccaagatgcca
atggactcttggatgtccccagcaccaaaatcaccatgagtcagcacagc
acacactgcccttttgtgagctctctgctgttccccgggcagatagcgtg
ggaggagtgctcaccagaggaggagggctctttctgcctccagcaacttc
agggcagaatctctgtcccttagggagtttatctttgggatttatggcgt
gtgctcagaattcattgtccaaaactcagtgctttctttgttgcatagaa
cattaagcacaggtcaccgaagagaacgcccacttcccgtgacatttgcc
actgagcgccactattgaagtgcagggagacatttgcaattaatggaagc
tgcccttagttataatagtgctcagtcctttacaggcagccagactgtag
ttgcgaggagagaaaatgccagcactatttatgtggtctgagaggtgggt
gtaaaactggggtgtggtaggtcacagcaagaatgggagctggatagatt
gtttggttccagaacacagtaagctcatgcagggagagggtgcctggatt
ctgtggagcctgactgcagtatcgccacaccactcctgctgcctctaaat
gaactcagctaccactctgaggcgctcccatctcttgcttctgatgtgag
atgagacatcctccagcctttagcttagtgcctgaccagagaaatgatcc
tgggcattatcactgatgtgtttataaaaagataaggaggtataggatgt
tgttcctatgggggggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44204424_44205490
seq2: B6Ng01-303N12.b_51_1126

seq1  GAATTCACCAAATAAAATGGCTGACAAATACAGTAGTGTTCTTAACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAATAAAATGGCTGACAAATACAGTAGTGTTCTTAACACAC  50

seq1  ACTGAAAATACACACTGAGGATTGTGACAAGCCGGACCCATGTTCAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATACACACTGAGGATTGTGACAAGCCGGACCCATGTTCAGATT  100

seq1  TCAAAATGTCTGTCTCACAACTGTAGCTAAAAATAAATAGGCAGAGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGTCTGTCTCACAACTGTAGCTAAAAATAAATAGGCAGAGGACA  150

seq1  GAGAGAAGGCCCAGGCATTAAGAGAGAGCACTGGCTGCTCCTTCAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGGCCCAGGCATTAAGAGAGAGCACTGGCTGCTCCTTCAGAGGA  200

seq1  TCTGGGTGCAGAACCAACATGGCAGCTCACAAAAGTCTGCAATTCCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGCAGAACCAACATGGCAGCTCACAAAAGTCTGCAATTCCAGTT  250

seq1  CCAGGCGATCTCCAAGAGTGCCAGGAACACATTTGTTACACACATGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGATCTCCAAGAGTGCCAGGAACACATTTGTTACACACATGTGTA  300

seq1  CCAATAGACCCTTATACAGAAAATAATAAAAAATCATTGTGAAAAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGACCCTTATACAGAAAATAATAAAAAATCATTGTGAAAAGCAGG  350

seq1  GCTGGTAAGATGGCGCAAGGAAAGGTGCTTGCTTTGCAATCTAGAACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAGATGGCGCAAGGAAAGGTGCTTGCTTTGCAATCTAGAACCTG  400

seq1  GGTTCAAACTTTAGAACACACATAAGGTGAAAGAAGAGAACTAACTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAACTTTAGAACACACATAAGGTGAAAGAAGAGAACTAACTCACC  450

seq1  AGGTTGTCCCCTGAGCTTCACACTCACACTGTGGCAAGTGCACAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTCCCCTGAGCTTCACACTCACACTGTGGCAAGTGCACAGAGACA  500

seq1  CACACGGACACACACATAACAGTAAAGCACGGAGACGAGATACAGTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGACACACACATAACAGTAAAGCACGGAGACGAGATACAGTTCAG  550

seq1  TGGCAGACGACATATTTGCAAACGTGTGAAGCCCTGGGTTTGATCGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACGACATATTTGCAAACGTGTGAAGCCCTGGGTTTGATCGCCAG  600

seq1  TGACATAACTAACAACATAATAATAAATCTTAAATCATATTATAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAACTAACAACATAATAATAAATCTTAAATCATATTATAAAAGTT  650

seq1  TTCCTCAACATTCATCCTGCCTAAAGAAGTCTCAGGAGTGGAGAAAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAACATTCATCCTGCCTAAAGAAGTCTCAGGAGTGGAGAAAGCTA  700

seq1  AAATTGTTTCTGTGAGGGCCACAACTGCACAGAGGATCGGAGGCACTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTTCTGTGAGGGCCACAACTGCACAGAGGATCGGAGGCACTGGC  750

seq1  AGACTATGGTGGGAATGGTGAAGAAGGCATTCCTAACAAAGGAACTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGTGGGAATGGTGAAGAAGGCATTCCTAACAAAGGAACTCCAG  800

seq1  GGGCTTTCTGAGATCCATGACCACAGAGACTGTGAAGGGGCTGTTTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCTGAGATCCATGACCACAGAGACTGTGAAGGGGCTGTTTTAGA  850

seq1  TTATAATGAGCTGAGTAACGATCATGTCATGTACACAGCAGACTAAGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGAGCTGAGTAACGATCATGTCATGTACACAGCAGACTAAGTCA  900

seq1  GACAGT-GGGGAGGGAACAACAGCAAAGCTTGACAACTGTCTTTGTCCTG  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGGGAGGGAACAACAGCAAAGCTTGACAACTGTCTTTGTCCTG  950

seq1  AAACTGAAGAAATGTAGAGGGCTATGAGCAGCTTTGAGCTGGAA-TTAAG  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACTGAAGAAATGTAGAGGGCTATGAGCAGCTTTGAGCTGGAATTTAAG  1000

seq1  AGTATT-CCTTAAAACAG-AAAAAAAGA-CAAAAGGGATG-AAAAACACA  1044
      |||||| ||||||||||| ||||||||| ||||||||||| |||||||||
seq2  AGTATTCCCTTAAAACAGAAAAAAAAGACCAAAAGGGATGAAAAAACACA  1050

seq1  GTG-ATGGACAC-TAGA-GACCTGAG  1067
      ||| |||||||| |||| ||||||||
seq2  GTGAATGGACACTTAGAGGACCTGAG  1076

seq1: chr19_44385960_44386925
seq2: B6Ng01-303N12.g_65_1035 (reverse)

seq1  CCACA--CCCCCATA-GAAC-ACATCCTATACCTCCTTATCTTTTTATAA  46
      |||||  |||||||| |||| |||||||||||||||||||||||||||||
seq2  CCACACCCCCCCATAGGAACAACATCCTATACCTCCTTATCTTTTTATAA  50

seq1  ACACATCAGTGATAATG-CCAGGATCATTTCTCTGGTCAGGCACTAAGCT  95
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACATCAGTGATAATGCCCAGGATCATTTCTCTGGTCAGGCACTAAGCT  100

seq1  AAAGGCTGGAGGATGTCTCATCTCACATCAGAAGCAAGAGATGGGAGCGC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGGAGGATGTCTCATCTCACATCAGAAGCAAGAGATGGGAGCGC  150

seq1  CTCAGAGTGGTAGCTGAGTTCATTTAGAGGCAGCAGGAGTGGTGTGGCGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGGTAGCTGAGTTCATTTAGAGGCAGCAGGAGTGGTGTGGCGA  200

seq1  TACTGCAGTCAGGCTCCACAGAATCCAGGCACCCTCTCCCTGCATGAGCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGTCAGGCTCCACAGAATCCAGGCACCCTCTCCCTGCATGAGCT  250

seq1  TACTGTGTTCTGGAACCAAACAATCTATCCAGCTCCCATTCTTGCTGTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTTCTGGAACCAAACAATCTATCCAGCTCCCATTCTTGCTGTGA  300

seq1  CCTACCACACCCCAGTTTTACACCCACCTCTCAGACCACATAAATAGTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCACACCCCAGTTTTACACCCACCTCTCAGACCACATAAATAGTGC  350

seq1  TGGCATTTTCTCTCCTCGCAACTACAGTCTGGCTGCCTGTAAAGGACTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTCTCTCCTCGCAACTACAGTCTGGCTGCCTGTAAAGGACTGA  400

seq1  GCACTATTATAACTAAGGGCAGCTTCCATTAATTGCAAATGTCTCCCTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTATAACTAAGGGCAGCTTCCATTAATTGCAAATGTCTCCCTGC  450

seq1  ACTTCAATAGTGGCGCTCAGTGGCAAATGTCACGGGAAGTGGGCGTTCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATAGTGGCGCTCAGTGGCAAATGTCACGGGAAGTGGGCGTTCTC  500

seq1  TTCGGTGACCTGTGCTTAATGTTCTATGCAACAAAGAAAGCACTGAGTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGACCTGTGCTTAATGTTCTATGCAACAAAGAAAGCACTGAGTTT  550

seq1  TGGACAATGAATTCTGAGCACACGCCATAAATCCCAAAGATAAACTCCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATGAATTCTGAGCACACGCCATAAATCCCAAAGATAAACTCCCT  600

seq1  AAGGGACAGAGATTCTGCCCTGAAGTTGCTGGAGGCAGAAAGAGCCCTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGAGATTCTGCCCTGAAGTTGCTGGAGGCAGAAAGAGCCCTCC  650

seq1  TCCTCTGGTGAGCACTCCTCCCACGCTATCTGCCCGGGGAACAGCAGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGTGAGCACTCCTCCCACGCTATCTGCCCGGGGAACAGCAGAGA  700

seq1  GCTCACAAAAGGGCAGTGTGTGCTGTGCTGACTCATGGTGATTTTGGTGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAAAAGGGCAGTGTGTGCTGTGCTGACTCATGGTGATTTTGGTGC  750

seq1  TGGGGACATCCAAGAGTCCATTGGCATCTTGGCCATTTTCCACTGAGAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACATCCAAGAGTCCATTGGCATCTTGGCCATTTTCCACTGAGAAC  800

seq1  AATGAGTAGTCAGGGTCAGGCCTTGAAAGACTTTGTGAACAAGAACAGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAGTCAGGGTCAGGCCTTGAAAGACTTTGTGAACAAGAACAGCA  850

seq1  AACGAGAGAAAACTGGTTGTCAAAGGCATGGCAGGCCCAGAACCACGCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGAGAAAACTGGTTGTCAAAGGCATGGCAGGCCCAGAACCACGCCT  900

seq1  GGCTGTATTCTTACGATTTCTTTTTTTCTTTTTTCTTTTTCTTTAGAAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATTCTTACGATTTCTTTTTTTCTTTTTTCTTTTTCTTTAGAAGT  950

seq1  GGAGGGTGAGGGTAAGAATTC  966
      |||||||||||||||||||||
seq2  GGAGGGTGAGGGTAAGAATTC  971