BAC Information

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BAC

Clone NameB6Ng01-304D15
Chromosome19 (Build37)
Map Location 16,922,626 - 17,060,968
singlet/doubletdoublet
Overlap geneFoxb2, A230083H22Rik
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304D15.bB6Ng01-304D15.g
ACCGA097835GA097836
length1,1521,110
definitionB6Ng01-304D15.b B6Ng01-304D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,922,626 - 16,923,728)(17,059,839 - 17,060,968)
sequence
gaattctgattggcttgaccttgtataagtcttgtgcagacaaccacagc
cactgagactacttcctaagtgtgattgttgcagactatttgatcacatt
gtgagccatgagactgtgaactggaaagacctgtttcttgtttggtgtgg
gtctgtcgtagcacacaccttaacccaagagttttctgtttactgtaaac
aagtagttgtggtatagctcggccctaggatacacctttaacctaagaca
tttctgtaaacaagagttaaagtcaacaataggtcaagaggcagaacaag
caactgattgacagagtaaacataagaacacccaggaaagagaaaggagg
gattttgagttgaagggcatttaagagagcatggagaaggagaccatgtt
tttcttctgagacataggtggaataggaaggtcagctgggtgctttccct
gcctctctgggcaagcaggctttctctacaccctctggttcctgaatctc
catttggtaaattgaatgtttgggattttgttttaaaaatagcttgttat
tggccctgacttttctcataaaaattaaatatcttagaacaaacctaatc
aaggaagtaaaagacttgtataatgaaaaattttgaaacactaaagaaaa
aaatcgatgaagactccaggagatggaaagacttcctacctaggaatgta
acatagttgagaatgcttacgtagcatgcatggagtcctgagcttgatac
acagcactccatatactgggcatgataggttaagcctgtaatcccaacac
tgggaaggtggaagcaggagggttagaacttcaaggtcatcattgtctat
acagtaaattctaagtcaagttgggatgcataagaccctgtctcaaaatc
aaattaaaggaaaaaaacccactagttttatgttacactaaatacaactt
acgtttgtctgcctttcgtattataattagaagtctgatgggaactcctc
taccccaagggaaagaaatcaaaatatgacagctgagctattgttgggta
gattttttttttcttttgtcaattggacagatgctagaagactcaatctg
aaggaagagaccttcactgagaaattgctttcatcagatttgacctgatg
gc

gaattcaggtcctctgcaagtacagtgggtgcttttaactgtcgggtcgt
ctctccagcctctcacaactggtgaattaatgctgactatttaaaattac
ttttgtaattttaatgggataattaattgaacaaattagagagaacacct
ttaagactcaactaccccaacgtgtttttctgttttgctgtttaaacaaa
acaaccacatataagaaaagaaaaaaggaaaaggtgtaatacagaaagtt
ttatttttttactgtgttagactttcaattaaaagatatatttagatatt
ttaaatgataaagactttttaaatgtcgtgaaaacttcaatacataataa
aatacatcagactacccgaaactttctccatagtaagtcttgcaagatag
atgataatcagtttttaagatgttttactcatcttgtacaataaatcttc
attcatttggtctagtagctgtgttcaataatgaaaaacataaaactcta
cgttaaagactcaaaatcccctaatcatttagcttagtctctttatgttg
tgatgtctgctctgaagtctccaacacagggaatcaccatcaaggggaca
cctcccttggcagctagtgcagagtccaaatccttgtctgggcagggcag
acacagcaatggggaagcttgtcagttatcctcagagtcaggagttggag
agcacagttggaggggccggaggaggggccagaggaggggccagaagagg
gtccgtgacattatgatagtccctgacctgatttgagaaagcagtttatc
ctctgggacaggtcaaagccccaggattctctcgcaagttgtttctcttg
gctgtttgggttttttagaagccagtgacaactcagatgctgtagattac
acagagtataaattttcatcaaagaaaaatagagggctgagattatatct
cgatggtagggtgtttgcctggaattcacatggccccaaaccaaactaaa
cacaagagccagcaaaaactaagagctgactctaatatttgtccataatg
agaccgacttctattataatatttactcactctccagagtagaatgaagt
actgatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16922626_16923728
seq2: B6Ng01-304D15.b_95_1199

seq1  AGCCACTGAGACTACTTCCTAAGTGTGATTGTTGCAGACTATTTGATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGAGACTACTTCCTAAGTGTGATTGTTGCAGACTATTTGATCAC  50

seq1  ATTGTGAGCCATGAGACTGTGAACTGGAAAGACCTGTTTCTTGTTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGCCATGAGACTGTGAACTGGAAAGACCTGTTTCTTGTTTGGTG  100

seq1  TGGGTCTGTCGTAGCACACACCTTAACCCAAGAGTTTTCTGTTTACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGTCGTAGCACACACCTTAACCCAAGAGTTTTCTGTTTACTGTA  150

seq1  AACAAGTAGTTGTGGTATAGCTCGGCCCTAGGATACACCTTTAACCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAGTTGTGGTATAGCTCGGCCCTAGGATACACCTTTAACCTAAG  200

seq1  ACATTTCTGTAAACAAGAGTTAAAGTCAACAATAGGTCAAGAGGCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGTAAACAAGAGTTAAAGTCAACAATAGGTCAAGAGGCAGAAC  250

seq1  AAGCAACTGATTGACAGAGTAAACATAAGAACACCCAGGAAAGAGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTGATTGACAGAGTAAACATAAGAACACCCAGGAAAGAGAAAGG  300

seq1  AGGGATTTTGAGTTGAAGGGCATTTAAGAGAGCATGGAGAAGGAGACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTTGAGTTGAAGGGCATTTAAGAGAGCATGGAGAAGGAGACCAT  350

seq1  GTTTTTCTTCTGAGACATAGGTGGAATAGGAAGGTCAGCTGGGTGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTCTGAGACATAGGTGGAATAGGAAGGTCAGCTGGGTGCTTTC  400

seq1  CCTGCCTCTCTGGGCAAGCAGGCTTTCTCTACACCCTCTGGTTCCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCTGGGCAAGCAGGCTTTCTCTACACCCTCTGGTTCCTGAAT  450

seq1  CTCCATTTGGTAAATTGAATGTTTGGGATTTTGTTTTAAAAATAGCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTGGTAAATTGAATGTTTGGGATTTTGTTTTAAAAATAGCTTGT  500

seq1  TATTGGCCCTGACTTTTCTCATAAAAATTAAATATCTTAGAACAAACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCCCTGACTTTTCTCATAAAAATTAAATATCTTAGAACAAACCTA  550

seq1  ATCAAGGAAGTAAAAGACTTGTATAATGAAAAATTTTGAAACACTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAGTAAAAGACTTGTATAATGAAAAATTTTGAAACACTAAAGA  600

seq1  AAAAAATCGATGAAGACTCCAGGAGATGGAAAGACTTCCTACCTAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCGATGAAGACTCCAGGAGATGGAAAGACTTCCTACCTAGGAAT  650

seq1  GTAACATAGTTGAGAATGCTTACGTAGCATGCATGGAGTCCTGAGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATAGTTGAGAATGCTTACGTAGCATGCATGGAGTCCTGAGCTTGA  700

seq1  TACACAGCACTCCATATACTGGGCATGATAGGTTAAGCCTGTAATCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCACTCCATATACTGGGCATGATAGGTTAAGCCTGTAATCCCAA  750

seq1  CACTGGGAAGGTGGAAGCAGGAGGGTTAGAACTTCAAGGTCATCATTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAAGGTGGAAGCAGGAGGGTTAGAACTTCAAGGTCATCATTGTC  800

seq1  TATACAGTAAATTCTAAGTCAAGTTGGGATGCATAAGACCCTGTCTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTAAATTCTAAGTCAAGTTGGGATGCATAAGACCCTGTCTCAAA  850

seq1  ATCAAATTAAAGGAAAAAAAACCCACTAGTTTTATGTTACACTAAATACA  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTAAAGG-AAAAAAACCCACTAGTTTTATGTTACACTAAATACA  899

seq1  ACTTACGTTTGTCTGCCTTTCGTATTATAATTAGAAGTCTGATGGAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTACGTTTGTCTGCCTTTCGTATTATAATTAGAAGTCTGATGGGAACT  949

seq1  CCTCTACCCCAA-GGAAAGAAATCAAAATTATGACAAGCTGAGCTTATGT  999
      |||||||||||| ||||||||||||||| |||||| |||||||||  |||
seq2  CCTCTACCCCAAGGGAAAGAAATCAAAA-TATGAC-AGCTGAGCTATTGT  997

seq1  TGGTTAGA-TTTTTTTTTCTTTTGTCAATTTGACAGAAGCCAG-AGACTC  1047
      ||| |||| ||||||||||||||||||||| |||||| || || ||||||
seq2  TGGGTAGATTTTTTTTTTCTTTTGTCAATTGGACAGATGCTAGAAGACTC  1047

seq1  -ATCTGGAAAGAGAGACCTCAACTGAGAAAATGCTTTCATCAGA-TTGAC  1095
       ||||| |   ||||||||  ||||||||| ||||||||||||| |||||
seq2  AATCTGAAGGAAGAGACCTTCACTGAGAAATTGCTTTCATCAGATTTGAC  1097

seq1  CTGTTGGC  1103
      ||| ||||
seq2  CTGATGGC  1105


seq1: chr19_17059839_17060968
seq2: B6Ng01-304D15.g_69_1178 (reverse)

seq1  AAGCATCAGGTCCTCTCCTTTCTACTCTGAAGAGTGAATTAAAATATTAA  50
      |||||||||     || | |||||||||| ||||||| |  ||||||| |
seq2  AAGCATCAG---TACTTCATTCTACTCTGGAGAGTGAGT--AAATATT-A  44

seq1  TAAATTAGAAAGTCGTTCCTCATTATGGACAAATATTTAGGAGTCAGGCT  100
      |||  ||| |||||| | |||||||||||||||||||   |||||| |||
seq2  TAA--TAG-AAGTCGGT-CTCATTATGGACAAATATT--AGAGTCA-GCT  87

seq1  CTTTAGTTTTTGCTGGCTTCTTTGGTTGTTTAGTTTTGGGTTTGGGGCCA  150
      | ||||||||||||||| ||||    ||||||||||  ||||||||||||
seq2  C-TTAGTTTTTGCTGGC-TCTT---GTGTTTAGTTT--GGTTTGGGGCCA  130

seq1  TGTGATTTCCAGGCAAACACCCTACCATCGAGATATAATCTCAGCCCTCT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCCAGGCAAACACCCTACCATCGAGATATAATCTCAGCCCTCT  180

seq1  ATTTTTCTTTTGATGAAAATTTATACTCTGTGTAATCTACAGCATCTGAG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTC-TTTGATGAAAATTTATACTCTGTGTAATCTACAGCATCTGAG  229

seq1  TTGTCACTGGCTTCTAAAAAA-CCAAACAGCCAAGAGAAACAACTTGCGA  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTCACTGGCTTCTAAAAAACCCAAACAGCCAAGAGAAACAACTTGCGA  279

seq1  GAGAATCCTGGGGCTTTGACCTGTCCCAGAGGATAAACTGCTTTCTCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTGGGGCTTTGACCTGTCCCAGAGGATAAACTGCTTTCTCAAA  329

seq1  TCAGGTCAGGGACTATCATAATGTCACGGACCCTCTTCTGGCCCCTCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAGGGACTATCATAATGTCACGGACCCTCTTCTGGCCCCTCCTC  379

seq1  TGGCCCCTCCTCCGGCCCCTCCAACTGTGCTCTCCAACTCCTGACTCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCTCCGGCCCCTCCAACTGTGCTCTCCAACTCCTGACTCTGA  429

seq1  GGATAACTGACAAGCTTCCCCATTGCTGTGTCTGCCCTGCCCAGACAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACTGACAAGCTTCCCCATTGCTGTGTCTGCCCTGCCCAGACAAGG  479

seq1  ATTTGGACTCTGCACTAGCTGCCAAGGGAGGTGTCCCCTTGATGGTGATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGACTCTGCACTAGCTGCCAAGGGAGGTGTCCCCTTGATGGTGATT  529

seq1  CCCTGTGTTGGAGACTTCAGAGCAGACATCACAACATAAAGAGACTAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTTGGAGACTTCAGAGCAGACATCACAACATAAAGAGACTAAGC  579

seq1  TAAATGATTAGGGGATTTTGAGTCTTTAACGTAGAGTTTTATGTTTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATTAGGGGATTTTGAGTCTTTAACGTAGAGTTTTATGTTTTTCA  629

seq1  TTATTGAACACAGCTACTAGACCAAATGAATGAAGATTTATTGTACAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAACACAGCTACTAGACCAAATGAATGAAGATTTATTGTACAAGA  679

seq1  TGAGTAAAACATCTTAAAAACTGATTATCATCTATCTTGCAAGACTTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAACATCTTAAAAACTGATTATCATCTATCTTGCAAGACTTACT  729

seq1  ATGGAGAAAGTTTCGGGTAGTCTGATGTATTTTATTATGTATTGAAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAGTTTCGGGTAGTCTGATGTATTTTATTATGTATTGAAGTTT  779

seq1  TCACGACATTTAAAAAGTCTTTATCATTTAAAATATCTAAATATATCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGACATTTAAAAAGTCTTTATCATTTAAAATATCTAAATATATCTTT  829

seq1  TAATTGAAAGTCTAACACAGTAAAAAAATAAAACTTTCTGTATTACACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAAAGTCTAACACAGTAAAAAAATAAAACTTTCTGTATTACACCT  879

seq1  TTTCCTTTTTTCTTTTCTTATATGTGGTTGTTTTGTTTAAACAGCAAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTTTCTTTTCTTATATGTGGTTGTTTTGTTTAAACAGCAAAAC  929

seq1  AGAAAAACACGTTGGGGTAGTTGAGTCTTAAAGGTGTTCTCTCTAATTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACACGTTGGGGTAGTTGAGTCTTAAAGGTGTTCTCTCTAATTTG  979

seq1  TTCAATTAATTATCCCATTAAAATTACAAAAGTAATTTTAAATAGTCAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAATTATCCCATTAAAATTACAAAAGTAATTTTAAATAGTCAGC  1029

seq1  ATTAATTCACCAGTTGTGAGAGGCTGGAGAGACGACCCGACAGTTAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCACCAGTTGTGAGAGGCTGGAGAGACGACCCGACAGTTAAAAG  1079

seq1  CACCCACTGTACTTGCAGAGGACCTGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  CACCCACTGTACTTGCAGAGGACCTGAATTC  1110


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