BAC Information

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BAC

Clone NameB6Ng01-304M14
Chromosome19 (Build37)17 (Build37)
Map Location 29,532,658 - 29,533,26686,004,351 - 86,005,488
singlet/doubletsingletsinglet
Overlap genePdcd1lg2
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274
Downstream geneC030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304M14.bB6Ng01-304M14.g
ACCGA098246GA098247
length7531,139
definitionB6Ng01-304M14.b B6Ng01-304M14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,532,658 - 29,533,266)(86,004,351 - 86,005,488)
sequence
gaattccaatgtgtttttttttcctctctctagcaatctttgattacata
ctgagcattttgaattttaacttgttgggatctgagtgcttttgtgttcc
tgtaaagagtttttgagtttcattctgggacgttgttatgttatgtggca
accattccttagtttgggatcttgtttttaaaatttgcttcataccagca
gatcagcatttcccctagggtttattatttcccacttctgaggtaagatc
cttctgaggacgctgctggcattgtgaattctgaggttttatggtctgcc
tgctgaaaacacactggtcctgcccagtgacctctggtccagtgtcccca
acactatcctataccttttacccaacctcaagtagttttttcatacacag
acaaccccccgacacacacacacatacacacatgagttagtttcttgcag
aatgctctgtgggagccaagtgagccctgagttctctctttaaacctttc
ttctttatgttcctctgttctgccttggtttccccagtccctggatccca
tctgtttaacctcaaaactactgggtcctacctcagttcttttctctccg
ttgcagcctgggatctcctccgatgtgttacactgggtagtattttatgt
gttgttcatcttctttcaatgacaagtgactagtcattgttcctactggc
caatatcttggaaacctgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtg
tgt
gaattctattaggtgaagggtttttgtttgtttgttttttgtttttaagt
aaacacagtaatcattgttcaagcttttcaaatcctacgatcttcaagcg
aggtaaatgatagtttcttcaggatgataattcttcttgggcacaaagtt
ttctgcctgcttgttctattcaaaaggactgacaatttgcattaaggcac
ttctctgaaaggcccataaggggaaacaacaggtaccagaaggaagggaa
ttcccaacagaaaggaggaaaagaaaggaactttatcaaaggccattgtt
attatttggaaacctcctgtaacacacacactttattttcaatagagaaa
ctagcggtgtgtggttgttggtgtgggcatctgtcccctgtgaaccacct
gtgcagagttaaaagaagctacagctaattcctgcccaaactttgccctc
agaaacagtgagagttattcactgtattgagcaaacctggctgctttgat
gctgggagaccccaaatggaactctttcatctctaccccatgttatctgc
aggagaagccagcccccaagtctaaggcatacttagcatagaggttggag
gacatgacctctgatacctacaggaacaggaaggctgcttaccctgacag
caaaggccagagccacaggtgtttgggtcatccggtctcccagcccaccc
aacactcccctacttcagggtgtgcccaaataatccagatggctacccat
atgtctttccccaactgaatttgcctattacacactgaatgtaaatatca
cccgcagccaagaagactgttttccatatatttaaacccaaatggcttaa
atctcagtgtgtttgggaagataacccactttccagtagccttaaatcct
gtgtttcaagagctgatcaggagagaccaactgagttatgactggatatg
ctagattctcttctcatgccgtggcgctgacatgtgctggggacaaggaa
cacgtacagtggaaagccagagggtgtccatggaacaaacagggttccag
catagagaaatcctcagaatggccttctgcaagagcagagttgaaacctg
aacaacctcaaggtctagcatgagtctcatggtagggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29532658_29533266
seq2: B6Ng01-304M14.b_442_800 (reverse)

seq1  ACACACATACACACACACACACACACACACACTCATACACACCCTGTCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AACACATACCCTATTACACACATACATACCCTGTCTCACACACGCACACA  100
                       |||||            ||||||||| ||||||
seq2  -----------------ACACA------------CTCACACACACACACA  21

seq1  CATACACACTCACATATACCCTGTCACACACACATTCTCCCCCACATACA  150
      || |||||||||||     |  ||  |  | | |||  ||   |   |||
seq2  CACACACACTCACA-----CAGGTTTCCAAGATATTGGCCAGTAGGAACA  66

seq1  GTCACATACACACACAGACACAAATTCTTATATACACACCTACACCACAC  200
       | ||          || |||   || | ||  | | |          | 
seq2  ATGAC---------TAGTCAC---TTGTCATTGAAAGA----------AG  94

seq1  ATACACACATCCCCCTCCACATACACATAGAATAAAATAAAATATGAATA  250
      ||  |||               ||||||| ||||  |   |    |  ||
seq2  ATGAACA---------------ACACATAAAATACTACCCA----GTGTA  125

seq1  AAACTTGGGACTACTATGTTCTTGTGTTTTCCCA--TTTCATACAGACCT  298
      | || | |||               |   |||||   | || || ||   
seq2  ACACATCGGA--------------GGAGATCCCAGGCTGCA-ACGGAGAG  160

seq1  CTTAGTTACT-ATGTA-GCCCCAGCTAATCTCAAACTAGAAATTCTCCTG  346
         ||  ||| | ||| | ||||| || | |  |  |  ||         
seq2  AAAAG-AACTGAGGTAGGACCCAG-TAGTTTTGAGGTTAAA---------  199

seq1  CCTCAGCCTCCCGAGCCTGGTACAGGTATGTATCCTTGGCTTCCTATTGC  396
         |||      || || || || ||   | | ||  |||          
seq2  ---CAG--ATGGGATCCAGGGACTGG--GGAAACCAAGGC----------  232

seq1  AGTTTTTAAGAACTCCTTTACAGTGTATATTATGAAAGTATCAACAACAC  446
              |||||      | || | | ||    ||||    || ||   
seq2  --------AGAAC------AGAG-GAACAT----AAAG----AAGAAAGG  259

seq1  TTTGAAAATAAAAAGCACAGATGTAATACACACACACACA-CATACACAA  495
      ||| || | | ||  ||  | |  | |   | | |||| | |||      
seq2  TTTAAAGAGAGAACTCAGGGCT-CACTTGGCTCCCACAGAGCAT------  302

seq1  ACAAATCTGGTTCTTGCCAAGATATGGGAAATATGGTTCTTAAGATGTGT  545
           ||||        |||||      || ||                 
seq2  -----TCTG--------CAAGA------AACTA-----------------  316

seq1  GGAGACTTGTGTGTGCACAAGTGTGTGTATGTGTGCATGTACATGTGTGT  595
          |||  |||||      || ||||| ||||||        |  | | 
seq2  ----ACTCATGTGT------GTATGTGTGTGTGTG--------TCGGGGG  348

seq1  GTACATGTCTGTGT  609
      ||   |||||||||
seq2  GT---TGTCTGTGT  359

seq1: chr17_86004351_86005488
seq2: B6Ng01-304M14.g_69_1207 (reverse)

seq1  TACCCCTTACCATTTAGACTCATGCTAGACCTTGAG--TGTCCA-GTTCA  47
      |||||  ||||| | |||||||||||||||||||||  ||| || |||  
seq2  TACCC--TACCA-TGAGACTCATGCTAGACCTTGAGGTTGTTCAGGTTTC  47

seq1  AACTCTGCCTCTTCCAGGAAGCCA-TCTGA-GATTTCTCCTATGCTGGAC  95
      ||||||| ||||| ||| | |||| ||||| ||||||| |||||||||| 
seq2  AACTCTG-CTCTTGCAGAAGGCCATTCTGAGGATTTCT-CTATGCTGGAA  95

seq1  CCCTGTTTGTTCCCAATGGGACACCCTCTGGC-TTCCACTGTACGTGT--  142
      |||||||||||||  || |||||||||||||| |||||||||||||||  
seq2  CCCTGTTTGTTCC--AT-GGACACCCTCTGGCTTTCCACTGTACGTGTTC  142

seq1  CCTGTCCCCAGCACATGTCAGCGCCACGGCATGAGAAGAGAATCTAGCAT  192
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCCAGCACATGTCAGCGCCACGGCATGAGAAGAGAATCTAGCAT  192

seq1  ATCCAGTCATAACTCAGTTGGTCTCTCCTGATCAGCTCTTGAAACACAGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCATAACTCAGTTGGTCTCTCCTGATCAGCTCTTGAAACACAGG  242

seq1  ATTTAAGGCTACTGGAAAGTGGGTTATCTT-CCAAACACACTGAGATTTA  291
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTAAGGCTACTGGAAAGTGGGTTATCTTCCCAAACACACTGAGATTTA  292

seq1  AGCCATTTGGGTTTAAATATATGGAAAACAGTCTTCTTGGCTGCGGGTGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGGGTTTAAATATATGGAAAACAGTCTTCTTGGCTGCGGGTGA  342

seq1  TATTTACATTCAGTGTGTAATAGGCAAATTCAGTTGGGGAAAGACATATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATTCAGTGTGTAATAGGCAAATTCAGTTGGGGAAAGACATATG  392

seq1  GGTAGCCATCTGGATTATTTGGGCACACCCTGAAGTAGGGGAGTGTTGGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCATCTGGATTATTTGGGCACACCCTGAAGTAGGGGAGTGTTGGG  442

seq1  TGGGCTGGGAGACCGGATGACCCAAACACCTGTGGCTCTGGCCTTTGCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGGAGACCGGATGACCCAAACACCTGTGGCTCTGGCCTTTGCTG  492

seq1  TCAGGGTAAGCAGCCTTCCTGTTCCTGTAGGTATCAGAGGTCATGTCCTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAAGCAGCCTTCCTGTTCCTGTAGGTATCAGAGGTCATGTCCTC  542

seq1  CAACCTCTATGCTAAGTATGCCTTAGACTTGGGGGCTGGCTTCTCCTGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTATGCTAAGTATGCCTTAGACTTGGGGGCTGGCTTCTCCTGCA  592

seq1  GATAACATGGGGTAGAGATGAAAGAGTTCCATTTGGGGTCTCCCAGCATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATGGGGTAGAGATGAAAGAGTTCCATTTGGGGTCTCCCAGCATC  642

seq1  AAAGCAGCCAGGTTTGCTCAATACAGTGAATAACTCTCACTGTTTCTGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCCAGGTTTGCTCAATACAGTGAATAACTCTCACTGTTTCTGAG  692

seq1  GGCAAAGTTTGGGCAGGAATTAGCTGTAGCTTCTTTTAACTCTGCACAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTTTGGGCAGGAATTAGCTGTAGCTTCTTTTAACTCTGCACAGG  742

seq1  TGGTTCACAGGGGACAGATGCCCACACCAACAACCACACACCGCTAGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACAGGGGACAGATGCCCACACCAACAACCACACACCGCTAGTTT  792

seq1  CTCTATTGAAAATAAAGTGTGTGTGTTACAGGAGGTTTCCAAATAATAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGAAAATAAAGTGTGTGTGTTACAGGAGGTTTCCAAATAATAAC  842

seq1  AATGGCCTTTGATAAAGTTCCTTTCTTTTCCTCCTTTCTGTTGGGAATTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTTGATAAAGTTCCTTTCTTTTCCTCCTTTCTGTTGGGAATTC  892

seq1  CCTTCCTTCTGGTACCTGTTGTTTCCCCTTATGGGCCTTTCAGAGAAGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCTGGTACCTGTTGTTTCCCCTTATGGGCCTTTCAGAGAAGTG  942

seq1  CCTTAATGCAAATTGTCAGTCCTTTTGAATAGAACAAGCAGGCAGAAAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGCAAATTGTCAGTCCTTTTGAATAGAACAAGCAGGCAGAAAAC  992

seq1  TTTGTGCCCAAGAAGAATTATCATCCTGAAGAAACTATCATTTACCTCGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCCAAGAAGAATTATCATCCTGAAGAAACTATCATTTACCTCGC  1042

seq1  TTGAAGATCGTAGGATTTGAAAAGCTTGAACAATGATTACTGTGTTTACT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCGTAGGATTTGAAAAGCTTGAACAATGATTACTGTGTTTACT  1092

seq1  TAAAAACAAAAAACAAACAAACAAAAACCCTTCACCTAATAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAAAACAAACAAACAAAAACCCTTCACCTAATAGAATTC  1139