BAC Information

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BAC

Clone NameB6Ng01-306N18
Chromosome19 (Build37)
Map Location 41,615,868 - 41,754,216
singlet/doubletdoublet
Overlap geneLcor, AI606181, Slit1
Upstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352
Downstream geneArhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306N18.bB6Ng01-306N18.g
ACCGA099782GA099783
length1561,105
definitionB6Ng01-306N18.b B6Ng01-306N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,615,868 - 41,616,023)(41,753,104 - 41,754,216)
sequence
gaattctatatgataattctctctttttggtggggtggggttcgagacag
agtttctctgtatagccctggctgtcctggaactcactctggagaccagg
ctgtcctcaaactcagaaatccccctgcctctgcctcccaagtactggga
ttacag
gaattctctgtgcatatggagaattgtctggagtgattcctggcaggcag
aaagggagccaataaaaaatgaatattttaaaagtaaaatctaactcagt
ggcatctggcagagggtctagatgagaatccgggcaggttataggcacag
tgaagcaatgaacgtagatttcccaccctcgtccaggattcctggggagg
ctacagtctgtccttagtcctgcttgggtaggcaggttgagtccgatgaa
ggaactgaagttcccggtggtgcctatgaagcaagggggcacaaactcgt
gcctgactctggcttggctgataccaggaagccagactgcggaaacagag
gggcttgtcagcgatgtttctctttaacgtgtggcagaagggaaccgaga
gctgattgatcagacccaggagcctcagggtggcacatgctgatctatcc
tccatcctcctccgtgtgggctccaccacacaagccagccctggaggcgc
agggctgcaggcacccgatatttactttgaaatgttaatttcccagctcc
atcctttcatcccgccctctctgcctgacagggtgagtggaacacagtca
gagtgggaatcagctgcagcgagctgggagcaccggggcggtggggcccg
gcacctcgctggaaggttcccgcagggatgtttctagaacctccgtctgt
ccagccaagtaggagggaggcacttctgtcttctgccttgctttcttctt
tagcctcagggagcagatgaggctacaagtggcttcaaagtacaggagct
gttactcgcagcaagccagcctctgagccttgaaacaggtcagcgtgtcc
tctggagatgaccgtgcgtccgctctttaagaccttctcccctcccagat
tccttgaagcctgcctgtgaatttaatatgtcaattccacttttcagaca
gcgagacccagggaggtagagaaacttgtccttggttccccccacttgat
tttgaccacactggatccaggacttcgggctcagtgcgaggctctgcatc
cccaaaccacctagatgcttcagatctttcgaggaataccctggtagaag
ttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41615868_41616023
seq2: B6Ng01-306N18.b_42_197

seq1  GAATTCTATATGATAATTCTCTCTTTTTGGTGGGGTGGGGTTCGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATGATAATTCTCTCTTTTTGGTGGGGTGGGGTTCGAGACAG  50

seq1  AGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGGAGACCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGGAGACCAGG  100

seq1  CTGTCCTCAAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTACTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCAAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTACTGGGA  150

seq1  TTACAG  156
      ||||||
seq2  TTACAG  156

seq1: chr19_41753104_41754216
seq2: B6Ng01-306N18.g_65_1169 (reverse)

seq1  GACAACCTCTCTACAGGGT-TATCTCGAAAGATCTGAAGCACCCTTGGGT  49
      |||||| |||   |||||| |  |||||||||||||||||| |  | |||
seq2  GACAACTTCT-ACCAGGGTATTCCTCGAAAGATCTGAAGCATC--TAGGT  47

seq1  GGTTTGGGGATGCAGAGCCTCGCACTGAGCCCCGAAGTCCTGGATTCCAG  99
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  GGTTTGGGGATGCAGAGCCTCGCACTGAG-CCCGAAGTCCTGGA-TCCAG  95

seq1  TGTGGTCCAAAATCAAGTGGGGG--ACCAAGGACAAGTTTCTCTACCTTC  147
      |||||| ||||||||||||||||  ||||||||||||||||||||||| |
seq2  TGTGGT-CAAAATCAAGTGGGGGGAACCAAGGACAAGTTTCTCTACCTCC  144

seq1  CTGGGTCTCGCTGTCTGAAAAGTGGAATTGACAATATTAAATTCACAGGC  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGGTCTCGCTGTCTGAAAAGTGGAATTGAC-ATATTAAATTCACAGGC  193

seq1  AGGCTTCAAGGAATCTGGGAGGGGGAGAAGGTCTTTAAAGAGCGGACGCA  247
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AGGCTTCAAGGAATCTGGGA-GGGGAGAAGGTC-TTAAAGAGCGGACGCA  241

seq1  CGGTCATCTCCAGAGGGACACGCTGACCTGTTTCAAGGCTCAGAGGCTGG  297
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CGGTCATCTCCAGA-GGACACGCTGACCTGTTTCAAGGCTCAGAGGCTGG  290

seq1  CTTTGCTGCGAGTAACAGCTCCTGTACTTTGAAGCCACTTGTAGCCTCAT  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTGCTGCGAGTAACAGCTCCTGTACTTTGAAGCCACTTGTAGCCTCAT  339

seq1  CTGCTCCCTGAGGCTAAAGAAGAAAGCAAGGCAGAAGACAGAAGTGCCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCTGAGGCTAAAGAAGAAAGCAAGGCAGAAGACAGAAGTGCCTC  389

seq1  CCTCCTACTTGGCTGGACAGACGGAGGTTCTAGAAACATCCCTGCGGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACTTGGCTGGACAGACGGAGGTTCTAGAAACATCCCTGCGGGAA  439

seq1  CCTTCCAGCGAGGTGCCGGGCCCCACCGCCCCGGTGCTCCCAGCTCGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCGAGGTGCCGGGCCCCACCGCCCCGGTGCTCCCAGCTCGCTG  489

seq1  CAGCTGATTCCCACTCTGACTGTGTTCCACTCACCCTGTCAGGCAGAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATTCCCACTCTGACTGTGTTCCACTCACCCTGTCAGGCAGAGAG  539

seq1  GGCGGGATGAAAGGATGGAGCTGGGAAATTAACATTTCAAAGTAAATATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGATGAAAGGATGGAGCTGGGAAATTAACATTTCAAAGTAAATATC  589

seq1  GGGTGCCTGCAGCCCTGCGCCTCCAGGGCTGGCTTGTGTGGTGGAGCCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTGCAGCCCTGCGCCTCCAGGGCTGGCTTGTGTGGTGGAGCCCA  639

seq1  CACGGAGGAGGATGGAGGATAGATCAGCATGTGCCACCCTGAGGCTCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGGAGGATGGAGGATAGATCAGCATGTGCCACCCTGAGGCTCCTG  689

seq1  GGTCTGATCAATCAGCTCTCGGTTCCCTTCTGCCACACGTTAAAGAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATCAATCAGCTCTCGGTTCCCTTCTGCCACACGTTAAAGAGAAA  739

seq1  CATCGCTGACAAGCCCCTCTGTTTCCGCAGTCTGGCTTCCTGGTATCAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTGACAAGCCCCTCTGTTTCCGCAGTCTGGCTTCCTGGTATCAGC  789

seq1  CAAGCCAGAGTCAGGCACGAGTTTGTGCCCCCTTGCTTCATAGGCACCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGAGTCAGGCACGAGTTTGTGCCCCCTTGCTTCATAGGCACCAC  839

seq1  CGGGAACTTCAGTTCCTTCATCGGACTCAACCTGCCTACCCAAGCAGGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACTTCAGTTCCTTCATCGGACTCAACCTGCCTACCCAAGCAGGAC  889

seq1  TAAGGACAGACTGTAGCCTCCCCAGGAATCCTGGACGAGGGTGGGAAATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAGACTGTAGCCTCCCCAGGAATCCTGGACGAGGGTGGGAAATC  939

seq1  TACGTTCATTGCTTCACTGTGCCTATAACCTGCCCGGATTCTCATCTAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTCATTGCTTCACTGTGCCTATAACCTGCCCGGATTCTCATCTAGA  989

seq1  CCCTCTGCCAGATGCCACTGAGTTAGATTTTACTTTTAAAATATTCATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCAGATGCCACTGAGTTAGATTTTACTTTTAAAATATTCATTT  1039

seq1  TTTATTGGCTCCCTTTCTGCCTGCCAGGAATCACTCCAGACAATTCTCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGCTCCCTTTCTGCCTGCCAGGAATCACTCCAGACAATTCTCCA  1089

seq1  TATGCACAGAGAATTC  1113
      ||||||||||||||||
seq2  TATGCACAGAGAATTC  1105