BAC Information

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BAC

Clone NameB6Ng01-309F06
Chromosome19 (Build37)
Map Location 19,831,450 - 19,832,471
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309F06.bB6Ng01-309F06.g
ACCGA101596GA101597
length1,0431,011
definitionB6Ng01-309F06.b B6Ng01-309F06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaaaggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcgat
tgtacgagggatagttatatcatgttaggcgtatttacaaccttgttatt
gtttcatgtgaacatgagatattatttgtgtcaagtgacaagggtggatt
gtagtggtatcctggatgacaactttgaacttaatttggaatgactacat
ccggaattgggatggctcaccagttgaatccatattctggagg
gaattcagttagatccctgggacatacatcgtgtcctctcacttcatgac
tacatgcattctgctgcacatgtattcccagacatacacagacagagaga
ataaataaatatgtaagtgtaaaatattacaagtcccattatttcccatg
tttagttatagaaaaatggatggaagggagtggggacaaatttaattaaa
ataagtttatgcttatataaaattctataacaataaataaaatgcattac
aaaactaggtaacaatgaaaatttcttctcagtgtatgatgttcaacatg
gtgttaaatcaaggcctttaaaccgttaggagaaaaaaaagaagaattat
gggtttagatgagccagaggcaaagaattaatgaaaaacttatcctgttg
tgagacctagaaaattagaatctataaaatggatattatatttagcacag
ttaagtctatttgaaatttatacattagtgattgttttgaactttactat
gtccagcttaataccaagtatggaataaagtgctcaagaacatgcaaaaa
gcatatccttaaatattacattaaatgctgatatattatttgtgttaaag
cttaattttagttaatcaatcattaaaactagaattgtatacttttcgac
agagaaactggtgtatataaaccaaaaaaactttaatctgacagactact
gaacataggctatatattggacaaattttccaaaagaaatgttagactga
caatcagagtcttccattttccatggttagtatttgacattacaagaatc
cgttaacatttttcctaggaaagacaccacttgacattggcaaaccgtct
ggtattcaactcattcatttggggatatctttgggttggaagtagaactg
tttcctcaactcagtgtttagaagagagaaatttcactttcattgtacaa
gtggcagatcagatagatttcaaggatgtgcttcataaaaccttctttga
aaaaaagctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19831450_19832471
seq2: B6Ng01-309F06.g_66_1076

seq1  GAATTCAGTTAGATCCCTGGGACATACATCGTGTCCTCTCACTTCATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGATCCCTGGGACATACATCGTGTCCTCTCACTTCATGAC  50

seq1  TACATGCATTCTGCTGCACATGTATTCCCAGACATACACAGACAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCATTCTGCTGCACATGTATTCCCAGACATACACAGACAGAGAGA  100

seq1  ATAAATAAATATGTAAGTGTAAAATATTACAAGTCCCATTATTTCCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATATGTAAGTGTAAAATATTACAAGTCCCATTATTTCCCATG  150

seq1  TTTAGTTATAGAAAAATGGATGGAAGGGAGTGGGGACAAATTTAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATAGAAAAATGGATGGAAGGGAGTGGGGACAAATTTAATTAAA  200

seq1  ATAAGTTTATGCTTATATAAAATTCTATAACAATAAATAAAATGCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTATGCTTATATAAAATTCTATAACAATAAATAAAATGCATTAC  250

seq1  AAAACTAGGTAACAATGAAAATTTCTTCTCAGTGTATGATGTTCAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGGTAACAATGAAAATTTCTTCTCAGTGTATGATGTTCAACATG  300

seq1  GTGTTAAATCAAGGCCTTTAAACCGTTAGGAGAAAAAAAAGAAGAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAATCAAGGCCTTTAAACCGTTAGGAGAAAAAAAAGAAGAATTAT  350

seq1  GGGTTTAGATGAGCCAGAGGCAAAGAATTAATGAAAAACTTATCCTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGATGAGCCAGAGGCAAAGAATTAATGAAAAACTTATCCTGTTG  400

seq1  TGAGACCTAGAAAATTAGAATCTATAAAATGGATATTATATTTAGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTAGAAAATTAGAATCTATAAAATGGATATTATATTTAGCACAG  450

seq1  TTAAGTCTATTTGAAATTTATACATTAGTGATTGTTTTGAACTTTACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTATTTGAAATTTATACATTAGTGATTGTTTTGAACTTTACTAT  500

seq1  GTCCAGCTTAATACCAAGTATGGAATAAAGTGCTCAAGAACATGCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTTAATACCAAGTATGGAATAAAGTGCTCAAGAACATGCAAAAA  550

seq1  GCATATCCTTAAATATTACATTAAATGCTGATATATTATTTGTGTTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCCTTAAATATTACATTAAATGCTGATATATTATTTGTGTTAAAG  600

seq1  CTTAATTTTAGTTAATCAATCATTAAAACTAGAATTGTATACTTTTCGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTAGTTAATCAATCATTAAAACTAGAATTGTATACTTTTCGAC  650

seq1  AGAGAAACTGGTGTATATAAACCAAAAAAACTTTAATCTGACAGACTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTGGTGTATATAAACCAAAAAAACTTTAATCTGACAGACTACT  700

seq1  GAACATAGGCTATATATTGGACAAATTTTCCAAAAGAAATGTTAGACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGGCTATATATTGGACAAATTTTCCAAAAGAAATGTTAGACTGA  750

seq1  CAATCAGAGTCTTCCATTTTCCATGGTTAGTATTTGACATTACAAGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAGTCTTCCATTTTCCATGGTTAGTATTTGACATTACAAGAATC  800

seq1  CGTTAACATTTTTCCTAGGAAAGACACCACTTGACATTGGCAAACCGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAACATTTTTCCTAGGAAAGACACCACTTGACATTGGCAAACCGTCT  850

seq1  GGTATTCAACTCATTCATTTGGGGATATCTTTGGGTTGGAAGTAGAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCAACTCATTCATTTGGGGATATCTTTGGGTTGGAAGTAGAACTG  900

seq1  TTTCCTCAACTCAGTGTTTAGAAGAGAGGAAATTTTCACTTTCAATGTAC  950
      ||||||||||||||||||||||||||||  || ||||||||||| |||||
seq2  TTTCCTCAACTCAGTGTTTAGAAGAGAG--AAATTTCACTTTCATTGTAC  948

seq1  AAGTGGCAAGATCAAGATTAGATTTCAAGGGATGTGCTCCATAAAACCCT  1000
      ||||||| ||||| ||| |||||||||| ||||||||| |||||||||  
seq2  AAGTGGC-AGATC-AGA-TAGATTTCAA-GGATGTGCTTCATAAAACC--  992

seq1  TTCTTTGGAAAAAAAAAGCTAA  1022
      |||||||   ||||||||||||
seq2  TTCTTTG---AAAAAAAGCTAA  1011