BAC Information

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BAC

Clone NameB6Ng01-316B05
Chromosome19 (Build37)
Map Location 58,872,051 - 59,067,130
singlet/doubletdoublet
Overlap geneHspa12a, 6430537H07Rik, 4930506M07Rik
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream geneLOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316B05.bB6Ng01-316B05.g
ACCGA106561GA106562
length1,0751,137
definitionB6Ng01-316B05.b B6Ng01-316B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,066,051 - 59,067,130)(58,872,051 - 58,873,193)
sequence
gaattcatggtcaccttcaactacacagtgagttagaggccagcctgggc
taagttcagtccttctttaatttcttttttggtagatccattagtacatg
aaccaagaagtacgatctgccattggtaaagtactctgtactctgagggg
gtgaatcacaatctagcagacctattcatgggctcatggcctcgtggcat
gtgacctgtgacattcacgggcttatggccattagtcttgtacactaaga
cttatggggaataggggagggaacaggtagagggaggctactttaggaag
cagccaggctttgtagacccggccacaggctcatgcactttggatgcact
gtcttgctcagttttccttctgggtctggctgctgctccctttcctatcc
agtctgttggcctgctgaactgacatgtcagggatgagcaagaggccctt
aggaaacataggatgcagcaatcatcaccaaaaacattctgcctgcttca
tttctttttgtacgtaaggaaaacacaaaccctggctgagctctcggccc
cccttcctgagtggcttcagctgtagaaacaggcagcaggcatctgtgta
ttcaaaaagagatcttcccacaagaacagacatgcttaaggctgtctagt
gttgctgcaaagttaccaaggacaaagcagagcagagatgatggacttga
cttcatgtccctgttttccaggagcttcttggcttgatcttttcgccctt
cttgctgccttccattatccccaggtgacataaggcttagtgaagctgga
aggaagaggcctttctgagcagagcactcaggcaccacaccagcctctct
gtgcagctggtatagatgaagaagtcgagtcagaccagtcaccagacctg
agggggtttctgtgccacagagtcaggctgaaaggaagagtccaatagaa
ctgagcaattttcagtctctctgagataggtattccagtcataatcatta
gctacagaaagactgtgtctcccgagctgtagcatagggatctgcggcat
tttggattgtataatacattgggaa
gaattccagcagataagaaagagagttctgaagagataagaaggactatg
agtcagattcttgattctttaccctcatttggctcttgaatgttgaatgt
tggcaagtctagccttgcacaggaggaggaacacagaacctggccttggg
aggcttctttttcgtggttcctctcctgctgtcttttttccttctctgat
ccttcctgtgggggttaaaagggcaacagcctccgagggcaggtggacct
ccaaccctcttacctagagagcagagtgtaagtacaggcactcttccctg
agggaaatctgacagggattgttaaggccacacactgtggtctgtggtca
cttcagcttggagggaattctcacattccaacactacgactgcagaccca
gagtctggaagggattaggttcaggaccctgctcctgacaagcaccagcg
attctgaggctggagagccacaggcctgccttcacgggtctaggtttacg
tactgcttttaggtgaatgtgaaaagctgcaggtttgatggagacatttc
atggaatagaacctcctttaatatttccttatggtgggattaagaagagg
gggaaggaaagggttaactgaaaatgtgcatggttggcaaggctgttttg
aatttttagatataaacagagtaaactgaaactctattttctccaattaa
atttctgctaaggtcacctagaatcatgcatgatctctgaactcacgctt
cattgttctgagaatcactttctgatctgggttttcatttactgggtttt
caattaactggggtccaaaaatgcacagcggtgttgtgtagtaatcagat
atactgagatagaccaaattcgtatacatttttttcaaaagtgttttcat
cactgtcctaatttgtcattagtcactactgctaatctcttactacttta
ttaaattgaactttgtcttagtatgtaatatgtagaaaaaacataagtgt
atagatacgtttgggactatctacccatttgtcatcactcagatctcaga
atgtatacctctcagagagggggtactgcttgtatttgggtacctcacct
tactcttacatggttacgtcacctagcaagtttgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59066051_59067130
seq2: B6Ng01-316B05.b_46_1120 (reverse)

seq1  TTCCCAAATTGTTATTATACAATCCAAAATGCTCGCAGATCCCTAATGCT  50
      |||||||  || |||||||||||||||||||| ||||||||||| |||||
seq2  TTCCCAA--TG-TATTATACAATCCAAAATGC-CGCAGATCCCT-ATGCT  45

seq1  AACAGCTCGGGAGACACAGTCTTTTCTGTAGCT-ATGAATATGGCTGGAA  99
       |||||||||||||||||||| ||||||||||| |||| |||| ||||||
seq2  -ACAGCTCGGGAGACACAGTC-TTTCTGTAGCTAATGATTATGACTGGAA  93

seq1  TACCTATCTCAGAGAGACTGAAAATTTGCTCAGTTCTATTGGACTCTTCC  149
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACCTATCTCAGAGAGACTGAAAA-TTGCTCAGTTCTATTGGACTCTTCC  142

seq1  -TTCAGCCTGACTCTGTGGCACAG-AACCCCCTCAGGTCTGGTGACTGGT  197
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTCAGCCTGACTCTGTGGCACAGAAACCCCCTCAGGTCTGGTGACTGGT  192

seq1  CTGACTCGACTTCTTCATCTATACCAGCTGCACAGAGAGGCTGGTGTGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCGACTTCTTCATCTATACCAGCTGCACAGAGAGGCTGGTGTGGT  242

seq1  GCCTGAGTGCTCTGCTCAGAAAGGCCTCTTCCTTCCAGCTTCACTAAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTGCTCTGCTCAGAAAGGCCTCTTCCTTCCAGCTTCACTAAGCC  292

seq1  TTATGTCACCTGGGGATAATGGAAGGCAGCAAGAAGGGCGAAAAGATCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCACCTGGGGATAATGGAAGGCAGCAAGAAGGGCGAAAAGATCAA  342

seq1  GCCAAGAAGCTCCTGGAAAACAGGGACATGAAGTCAAGTCCATCATCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAGCTCCTGGAAAACAGGGACATGAAGTCAAGTCCATCATCTCT  392

seq1  GCTCTGCTTTGTCCTTGGTAACTTTGCAGCAACACTAGACAGCCTTAAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTTTGTCCTTGGTAACTTTGCAGCAACACTAGACAGCCTTAAGC  442

seq1  ATGTCTGTTCTTGTGGGAAGATCTCTTTTTGAATACACAGATGCCTGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTCTTGTGGGAAGATCTCTTTTTGAATACACAGATGCCTGCTG  492

seq1  CCTGTTTCTACAGCTGAAGCCACTCAGGAAGGGGGGCCGAGAGCTCAGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTACAGCTGAAGCCACTCAGGAAGGGGGGCCGAGAGCTCAGCC  542

seq1  AGGGTTTGTGTTTTCCTTACGTACAAAAAGAAATGAAGCAGGCAGAATGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGTGTTTTCCTTACGTACAAAAAGAAATGAAGCAGGCAGAATGT  592

seq1  TTTTGGTGATGATTGCTGCATCCTATGTTTCCTAAGGGCCTCTTGCTCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGATGATTGCTGCATCCTATGTTTCCTAAGGGCCTCTTGCTCAT  642

seq1  CCCTGACATGTCAGTTCAGCAGGCCAACAGACTGGATAGGAAAGGGAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACATGTCAGTTCAGCAGGCCAACAGACTGGATAGGAAAGGGAGCA  692

seq1  GCAGCCAGACCCAGAAGGAAAACTGAGCAAGACAGTGCATCCAAAGTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGACCCAGAAGGAAAACTGAGCAAGACAGTGCATCCAAAGTGCA  742

seq1  TGAGCCTGTGGCCGGGTCTACAAAGCCTGGCTGCTTCCTAAAGTAGCCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTGGCCGGGTCTACAAAGCCTGGCTGCTTCCTAAAGTAGCCTC  792

seq1  CCTCTACCTGTTCCCTCCCCTATTCCCCATAAGTCTTAGTGTACAAGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTGTTCCCTCCCCTATTCCCCATAAGTCTTAGTGTACAAGACT  842

seq1  AATGGCCATAAGCCCGTGAATGTCACAGGTCACATGCCACGAGGCCATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCATAAGCCCGTGAATGTCACAGGTCACATGCCACGAGGCCATGA  892

seq1  GCCCATGAATAGGTCTGCTAGATTGTGATTCACCCCCTCAGAGTACAGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAATAGGTCTGCTAGATTGTGATTCACCCCCTCAGAGTACAGAG  942

seq1  TACTTTACCAATGGCAGATCGTACTTCTTGGTTCATGTACTAATGGATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACCAATGGCAGATCGTACTTCTTGGTTCATGTACTAATGGATCT  992

seq1  ACCAAAAAAGAAATTAAAGAAGGACTGAACTTAGCCCAGGCTGGCCTCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAGAAATTAAAGAAGGACTGAACTTAGCCCAGGCTGGCCTCTA  1042

seq1  ACTCACTGTGTAGTTGAAGGTGACCATGAATTC  1080
      |||||||||||||||||||||||||||||||||
seq2  ACTCACTGTGTAGTTGAAGGTGACCATGAATTC  1075

seq1: chr19_58872051_58873193
seq2: B6Ng01-316B05.g_68_1204

seq1  GAATTCCAGCAGATAAGAAAGAGAGTTCTGAAGAGATAAGAAGGACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGATAAGAAAGAGAGTTCTGAAGAGATAAGAAGGACTATG  50

seq1  AGTCAGATTCTTGATTCTTTACCCTCATTTGGCTCTTGAATGTTGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATTCTTGATTCTTTACCCTCATTTGGCTCTTGAATGTTGAATGT  100

seq1  TGGCAAGTCTAGCCTTGCACAGGAGGAGGAACACAGAACCTGGCCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTCTAGCCTTGCACAGGAGGAGGAACACAGAACCTGGCCTTGGG  150

seq1  AGGCTTCTTTTTCGTGGTTCCTCTCCTGCTGTCTTTTTTCCTTCTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTTTTCGTGGTTCCTCTCCTGCTGTCTTTTTTCCTTCTCTGAT  200

seq1  CCTTCCTGTGGGGGTTAAAAGGGCAACAGCCTCCGAGGGCAGGTGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTGGGGGTTAAAAGGGCAACAGCCTCCGAGGGCAGGTGGACCT  250

seq1  CCAACCCTCTTACCTAGAGAGCAGAGTGTAAGTACAGGCACTCTTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTCTTACCTAGAGAGCAGAGTGTAAGTACAGGCACTCTTCCCTG  300

seq1  AGGGAAATCTGACAGGGATTGTTAAGGCCACACACTGTGGTCTGTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATCTGACAGGGATTGTTAAGGCCACACACTGTGGTCTGTGGTCA  350

seq1  CTTCAGCTTGGAGGGAATTCTCACATTCCAACACTACGACTGCAGACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTGGAGGGAATTCTCACATTCCAACACTACGACTGCAGACCCA  400

seq1  GAGTCTGGAAGGGATTAGGTTCAGGACCCTGCTCCTGACAAGCACCAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGAAGGGATTAGGTTCAGGACCCTGCTCCTGACAAGCACCAGCG  450

seq1  ATTCTGAGGCTGGAGAGCCACAGGCCTGCCTTCACGGGTCTAGGTTTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGCTGGAGAGCCACAGGCCTGCCTTCACGGGTCTAGGTTTACG  500

seq1  TACTGCTTTTAGGTGAATGTGAAAAGCTGCAGGTTTGATGGAGACATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTTAGGTGAATGTGAAAAGCTGCAGGTTTGATGGAGACATTTC  550

seq1  ATGGAATAGAACCTCCTTTAATATTTCCTTATGGTGGGATTAAGAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAGAACCTCCTTTAATATTTCCTTATGGTGGGATTAAGAAGAGG  600

seq1  GGGAAGGAAAGGGTTAACTGAAAATGTGCATGGTTGGCAAGGCTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAAAGGGTTAACTGAAAATGTGCATGGTTGGCAAGGCTGTTTTG  650

seq1  AATTTTTAGATATAAACAGAGTAAACTGAAACTCTATTTTCTCCAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGATATAAACAGAGTAAACTGAAACTCTATTTTCTCCAATTAA  700

seq1  ATTTCTGCTAAGGTCACCTAGAATCATGCATGATCTCTGAACTCACGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTAAGGTCACCTAGAATCATGCATGATCTCTGAACTCACGCTT  750

seq1  CATTGTTCTGAGAATCACTTTCTGATCTGGGTTTTCATTTACTGGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCTGAGAATCACTTTCTGATCTGGGTTTTCATTTACTGGGTTTT  800

seq1  CAATTAACTGGGGTCCAAAAATGCACAGCGGTGTTGTGTAGTAATCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACTGGGGTCCAAAAATGCACAGCGGTGTTGTGTAGTAATCAGAT  850

seq1  ATACTGAGATAGACCAAATTCGTATACATTTTAT--CAAAGTGTTTTCAT  898
      |||||||||||||||||||||||||||||||| |   |||||||||||||
seq2  ATACTGAGATAGACCAAATTCGTATACATTTTTTTCAAAAGTGTTTTCAT  900

seq1  CACTGTCCTAATTTGTCATTAGTCACTACTGCTAATCTCTTACTACTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCTAATTTGTCATTAGTCACTACTGCTAATCTCTTACTACTTTA  950

seq1  TTAAATTGAACTTTGTCCTAGGTATGT-ATATGTAGAAAAAACAT-AGTG  996
      ||||||||||||||||| || |||||| ||||||||||||||||| ||||
seq2  TTAAATTGAACTTTGTCTTA-GTATGTAATATGTAGAAAAAACATAAGTG  999

seq1  TATAGATAAGGTTTGGAACTATCTACCCATTTGGTCATCCACTCAGGAGT  1046
      ||||||| | |||||| ||||||||||||||| ||||| |||||||   |
seq2  TATAGAT-ACGTTTGGGACTATCTACCCATTT-GTCAT-CACTCAG--AT  1044

seq1  CTCAGAATGTATACTCTC-CAGAGAAGGGGGTACTGCTGTAATTTGGGGT  1095
      |||||||||||||| ||| ||||| |||||||||||||   |||| ||||
seq2  CTCAGAATGTATAC-CTCTCAGAG-AGGGGGTACTGCTTGTATTT-GGGT  1091

seq1  ACCTCA-CTAACTCTTCAGTGTACAGGTTCCACCAAAGCAAGTTTGACC  1143
      |||||| || ||||||   ||   | ||  ||||  |||||||||||||
seq2  ACCTCACCTTACTCTTACATGGTTACGT--CACC-TAGCAAGTTTGACC  1137