BAC Information

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BAC

Clone NameB6Ng01-316E20
Chromosome19 (Build37)
Map Location 35,513,848 - 35,603,665
singlet/doubletdoublet
Overlap geneLOC100042292
Upstream geneCh25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316E20.bB6Ng01-316E20.g
ACCGA106731GA106732
length1,106774
definitionB6Ng01-316E20.b B6Ng01-316E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,513,848 - 35,514,961)(35,602,893 - 35,603,665)
sequence
gaattccaataataattattcattaatcatttctttcataaatcatattt
ctgatagaattcatattataaaatttctataaatgagaaatggcagcatt
ttctctattatatgcacaaaatatctggtgtcacggttctagtaatgtat
aggtagaaaatcacaagtccagaagtagaaaaacactgctggtgtcaaga
gttggacaccactggtatccgatatttaaggacactgatgggcagtaggc
aaccctcccctaagctgatagtacttagccacagaagttaataaaatgct
cctataacagcaactgtcatgaaagaagcatgtgaaacttggattatcaa
ccatggcttctgttttagtcagggttctctagaggaacagtgattataga
agtgatttattagactgtattcagaccagtccagctagtccagcaatggt
tgtctatcaatgaaaggtccaagaatctagtcgtttttcagtccataagg
ctggacgtcacaactggtcttcagtatgcactagaattccaaagaaatag
gctgcaatgtcactgaaggaatggacttctagtgacagcaagatcaagca
gccgaaagagacagagacagagagaaacccagtatctaggtcatctcaaa
tcttaatttgtaaagtcaaatgatggagattttgttaaaaacaacaatac
atagcaaggcagcagctttggcttcagagaacagagtaagtaagcaacac
ttgaaagtagaaaggatatgaagccaagtcttatggtcacatagatgtgg
ataaaaggcttagattctattcgacatgtagtgaattttattgagactca
acttatgtaccaattattagtgccctaacttacataatttctttttttaa
gagggaagatttatattctctcacacaataaatttcaaaactatgggagt
tccttaaatagttatctcagtgcagcaataatgtcctccaagatccaaga
tttccacatctggctgctatcatcataatgtgtgcttttatttacatgta
gatagctactaaatttacatctgtaccttcagaagatgaaatatttataa
ggtaga
gaattctcatgatcacctgattcattactgctgtaatggctaatctttat
attccatcttcttttgtctctcattttgatactatttttgttattgtttt
tatttttatacatattgactttcctaaaaaatagaaacctaccctacaca
aagggcttgtaataacttttccatgcctaataaaactatttccaaagtat
ggcctatggtatagtaatcaaggaatatatttcataaaatataatttcat
tttaaaaataaagatacaaaaatacatgtaaaattcttatagaattctca
aagtttagatagatgcattaaagactatcagaaaactagtgtctctttct
tatttaaacattttgttgatttttgttttacctattagtagttattgtat
aaaagatgctgacaggagtctgatatagctatttcctgagaggctctgcc
agagcctaacacatacagaggcagatgctcataacacagggtcccaaatg
aaggagtaaaagaaaggactggaggaactgaaggggtttgcagccccata
ggaataacaataacaataataataataataacaatcagatagctccacag
ctcccagacactaaaacaataaccaaggtgtacacatggagggacccatg
gctccagctgcttatgtagcagaagatggccttcttgggcatcaatagga
ggagaggcccttggtattgtgacagtttgatgccccagtgtaggggatta
tgggggcgggaagaggggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35513848_35514961
seq2: B6Ng01-316E20.b_45_1150

seq1  GAATTCCAATAATAATTATTCATTAATCATTTCTTTCATAAATCATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAATAATTATTCATTAATCATTTCTTTCATAAATCATATTT  50

seq1  CTGATAGAATTCATATTATAAAATTTCTATAAATGAGAAATGGCAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAATTCATATTATAAAATTTCTATAAATGAGAAATGGCAGCATT  100

seq1  TTCTCTATTATATGCACAAAATATCTGGTGTCACGGTTCTAGTAATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTATATGCACAAAATATCTGGTGTCACGGTTCTAGTAATGTAT  150

seq1  AGGTAGAAAATCACAAGTCCAGAAGTAGAAAAACACTGCTGGTGTCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAAATCACAAGTCCAGAAGTAGAAAAACACTGCTGGTGTCAAGA  200

seq1  GTTGGACACCACTGGTATCCGATATTTAAGGACACTGATGGGCAGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACACCACTGGTATCCGATATTTAAGGACACTGATGGGCAGTAGGC  250

seq1  AACCCTCCCCTAAGCTGATAGTACTTAGCCACAGAAGTTAATAAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCCCTAAGCTGATAGTACTTAGCCACAGAAGTTAATAAAATGCT  300

seq1  CCTATAACAGCAACTGTCATGAAAGAAGCATGTGAAACTTGGATTATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAACAGCAACTGTCATGAAAGAAGCATGTGAAACTTGGATTATCAA  350

seq1  CCATGGCTTCTGTTTTAGTCAGGGTTCTCTAGAGGAACAGTGATTATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTTCTGTTTTAGTCAGGGTTCTCTAGAGGAACAGTGATTATAGA  400

seq1  AGTGATTTATTAGACTGTATTCAGACCAGTCCAGCTAGTCCAGCAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTATTAGACTGTATTCAGACCAGTCCAGCTAGTCCAGCAATGGT  450

seq1  TGTCTATCAATGAAAGGTCCAAGAATCTAGTCGTTTTTCAGTCCATAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCAATGAAAGGTCCAAGAATCTAGTCGTTTTTCAGTCCATAAGG  500

seq1  CTGGACGTCACAACTGGTCTTCAGTATGCACTAGAATTCCAAAGAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGTCACAACTGGTCTTCAGTATGCACTAGAATTCCAAAGAAATAG  550

seq1  GCTGCAATGTCACTGAAGGAATGGACTTCTAGTGACAGCAAGATCAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAATGTCACTGAAGGAATGGACTTCTAGTGACAGCAAGATCAAGCA  600

seq1  GCCGAAAGAGACAGAGACAGAGAGAAACCCAGTATCTAGGTCATCTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAAGAGACAGAGACAGAGAGAAACCCAGTATCTAGGTCATCTCAAA  650

seq1  TCTTAATTTGTAAAGTCAAATGATGGAGATTTTGTTAAAAACAACAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTGTAAAGTCAAATGATGGAGATTTTGTTAAAAACAACAATAC  700

seq1  ATAGCAAGGCAGCAGCTTTGGCTTCAGAGAACAGAGTAAGTAAGCAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGGCAGCAGCTTTGGCTTCAGAGAACAGAGTAAGTAAGCAACAC  750

seq1  TTGAAAGTAGAAAGGATATGAAGCCAAGTCTTATGGTCACATAGATGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTAGAAAGGATATGAAGCCAAGTCTTATGGTCACATAGATGTGG  800

seq1  ATAAAAGGCTTAGATTCTATTCGACATGTAGTGAATTTTATTGAGACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGCTTAGATTCTATTCGACATGTAGTGAATTTTATTGAGACTCA  850

seq1  ACTTATGTACCAATTATTAGTGCCCTAACTTACATAATTTCTTTTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTACCAATTATTAGTGCCCTAACTTACATAATTTCTTTTTTTAA  900

seq1  GAGGGAAGATTTATATTCTCTCACACAATAAATTTCAAAACTATGGGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGATTTATATTCTCTCACACAATAAATTTCAAAACTATGGGAGT  950

seq1  TCCTTAAATAGTTATCTCAGTGCAGCAATAATGTCCTCCAAGATCCAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAATAGTTATCTCAGTGCAGCAATAATGTCCTCCAAGATCCAAGA  1000

seq1  TTTCCACATCTGGCTGCTTAATCATCCATAATGTGTTGCTTTTATTTACA  1050
      ||||||||||||||||||  ||||| ||||||||| ||||||||||||||
seq2  TTTCCACATCTGGCTGCT--ATCAT-CATAATGTG-TGCTTTTATTTACA  1046

seq1  TGGTAAGATAGCTACCTAAATTTTACATCTGTAACTTTCAG-AGATGAAA  1099
      ||   ||||||||| ||||| ||||||||||| || ||||| ||||||||
seq2  TG--TAGATAGCTA-CTAAA-TTTACATCTGT-ACCTTCAGAAGATGAAA  1091

seq1  TATTTTATAA-GTAGA  1114
      || ||||||| |||||
seq2  TA-TTTATAAGGTAGA  1106

seq1: chr19_35602893_35603665
seq2: B6Ng01-316E20.g_65_838 (reverse)

seq1  CACCCA-CCCTCTTCCCGCCCCCATAATCCCCTACACTGGGGCATCAAAC  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCCTCTTCCCGCCCCCATAATCCCCTACACTGGGGCATCAAAC  50

seq1  TGTCACAATACCAAGGGCCTCTCCTCCTATTGATGCCCAAGAAGGCCATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAATACCAAGGGCCTCTCCTCCTATTGATGCCCAAGAAGGCCATC  100

seq1  TTCTGCTACATAAGCAGCTGGAGCCATGGGTCCCTCCATGTGTACACCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTACATAAGCAGCTGGAGCCATGGGTCCCTCCATGTGTACACCTT  150

seq1  GGTTATTGTTTTAGTGTCTGGGAGCTGTGGAGCTATCTGATTGTTATTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGTTTTAGTGTCTGGGAGCTGTGGAGCTATCTGATTGTTATTAT  200

seq1  TATTATTATTGTTATTGTTATTCCTATGGGGCTGCAAACCCCTTCAGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTGTTATTGTTATTCCTATGGGGCTGCAAACCCCTTCAGTTC  250

seq1  CTCCAGTCCTTTCTTTTACTCCTTCATTTGGGACCCTGTGTTATGAGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCCTTTCTTTTACTCCTTCATTTGGGACCCTGTGTTATGAGCAT  300

seq1  CTGCCTCTGTATGTGTTAGGCTCTGGCAGAGCCTCTCAGGAAATAGCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGTATGTGTTAGGCTCTGGCAGAGCCTCTCAGGAAATAGCTAT  350

seq1  ATCAGACTCCTGTCAGCATCTTTTATACAATAACTACTAATAGGTAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTCCTGTCAGCATCTTTTATACAATAACTACTAATAGGTAAAAC  400

seq1  AAAAATCAACAAAATGTTTAAATAAGAAAGAGACACTAGTTTTCTGATAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAACAAAATGTTTAAATAAGAAAGAGACACTAGTTTTCTGATAG  450

seq1  TCTTTAATGCATCTATCTAAACTTTGAGAATTCTATAAGAATTTTACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATGCATCTATCTAAACTTTGAGAATTCTATAAGAATTTTACATG  500

seq1  TATTTTTGTATCTTTATTTTTAAAATGAAATTATATTTTATGAAATATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTATCTTTATTTTTAAAATGAAATTATATTTTATGAAATATAT  550

seq1  TCCTTGATTACTATACCATAGGCCATACTTTGGAAATAGTTTTATTAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTACTATACCATAGGCCATACTTTGGAAATAGTTTTATTAGGC  600

seq1  ATGGAAAAGTTATTACAAGCCCTTTGTGTAGGGTAGGTTTCTATTTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGTTATTACAAGCCCTTTGTGTAGGGTAGGTTTCTATTTTTTA  650

seq1  GGAAAGTCAATATGTATAAAAATAAAAACAATAACAAAAATAGTATCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCAATATGTATAAAAATAAAAACAATAACAAAAATAGTATCAAA  700

seq1  ATGAGAGACAAAAGAAGATGGAATATAAAGATTAGCCATTACAGCAGTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGACAAAAGAAGATGGAATATAAAGATTAGCCATTACAGCAGTAA  750

seq1  TGAATCAGGTGATCATGAGAATTC  773
      ||||||||||||||||||||||||
seq2  TGAATCAGGTGATCATGAGAATTC  774