BAC Information

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BAC

Clone NameB6Ng01-316K23
Chromosome19 (Build37)
Map Location 5,607,441 - 5,794,302
singlet/doubletdoublet
Overlap geneHtatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1
Upstream genePcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c
Downstream gene2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316K23.bB6Ng01-316K23.g
ACCGA107020GA107021
length5341,069
definitionB6Ng01-316K23.b B6Ng01-316K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,793,763 - 5,794,302)(5,607,441 - 5,608,518)
sequence
acccagagctgaggctttgccgaggtgaggcacaaagacttcactggaga
gcaggagatatgaacagaggttggggctcacacttcctgattgggggcca
ggactgggggcaagatgaaggaacggtaggcatgcttgtaaatttcccaa
agggttagatccagatcttagctttcagtgtgtaggccagggtgactctg
aatttgggtccttggacctcaactttggaagttgcagggatgagccactg
ggctctgtacagtcttgtgctgcccacatgctctagttgtacaaaggata
ctccctcaaacaagctctccccaaataggcctttgacgtctggacccagc
caccggcccaaaagccgattagtacagggccagcagcatagcatccttct
actacggcatgaaattaggagaggaagggtttgaagagagagagtggaag
atgtggtttttattttttatttattttatgtatgtgagtacactgtaact
gtacagatggttgtgaaccttcatgtggttgttg
gaattcaataaaaacagtgacctgctcataggcagaatggtcaactgttc
tgagcaggaaaaggttgttcatgtgactcactccagcccagccgtgccca
agccactaaccttgtttttccgtccatcaatctcaaaaaaggagatggtg
cccttgcggtaaatttcattgcctggagggtgccgaagatcacatttggt
ctaaggacaaaaggaggatcaggtggggactggtgagggtactctggata
ggcagcctcccaagacccctcataccaagtggcgttgcagacacttgagg
ctacggccatatttgaggcaaaattcgcacaggtagaggacgggtagcgt
ggtaagctcttgtgggtacggggagaagtaccacggcttgaggcggtgcc
ggccaagctcaatacactcaatgttcttcatccgggtgacaatgtcgtcg
tggctccggtcagacaccagactgccagtcattcgtggtgctgacggtat
tccatctgagctgtcctgagaatcctgcccaaggcagatggcaaatacta
gatggtagcagttaagcagagcgtggcgcacgacactgccattggcttct
tcctgcaagtctaacatcagctaagggcaaagcaccaacctccacttcca
aaataaagcgaggctgagaaactgagagtagaagaggcccaggggttcat
ctgcttggctcccagccaccaccctccctgcctaaggcctcaccgagtga
acaccatgcccaagcccactccccctttcccggcttccctctccctctgc
tcctcaagacccacctcatcagtgcccaagcaattagatttccgcttccg
tccaggctgggctgccactgccctacgggctgacccattctgtggacaag
acacaagagaaagagcgaccgtgagatgatcctggaggaggatgctagac
agcaaggaataagaggggaaagaccaggcagctgttgggatgctcagtgg
tagagccctgatcttcagagactttcctgggtcttttccaggaccacaga
gtgctcaccacaatctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5793763_5794302
seq2: B6Ng01-316K23.b_48_587 (reverse)

seq1  CAACAACCACATGAAGGTTCACAACCATCTGTACAGCTACAGTGTACTCA  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAACAACCACATGAAGGTTCACAACCATCTGTACAGTTACAGTGTACTCA  50

seq1  CATACATAAAATAAATAAAAAATAAAAACCACATCTTCCACTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAAATAAATAAAAAATAAAAACCACATCTTCCACTCTCTCTCT  100

seq1  TCAAACCCTTCCTCTCCTAATTTCATGCCGTAGTAGAAGGATGCTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCTTCCTCTCCTAATTTCATGCCGTAGTAGAAGGATGCTATGCT  150

seq1  GCTGGCCCTGTACTAATCGGCTTTTGGGCCGGTGGCTGGGTCCAGACGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCCTGTACTAATCGGCTTTTGGGCCGGTGGCTGGGTCCAGACGTC  200

seq1  AAAGGCCTATTTGGGGAGAGCTTGTTTGAGGGAGTATCCTTTGTACAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTATTTGGGGAGAGCTTGTTTGAGGGAGTATCCTTTGTACAACT  250

seq1  AGAGCATGTGGGCAGCACAAGACTGTACAGAGCCCAGTGGCTCATCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGTGGGCAGCACAAGACTGTACAGAGCCCAGTGGCTCATCCCTG  300

seq1  CAACTTCCAAAGTTGAGGTCCAAGGACCCAAATTCAGAGTCACCCTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCAAAGTTGAGGTCCAAGGACCCAAATTCAGAGTCACCCTGGCC  350

seq1  TACACACTGAAAGCTAAGATCTGGATCTAACCCTTTGGGAAATTTACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTGAAAGCTAAGATCTGGATCTAACCCTTTGGGAAATTTACAAG  400

seq1  CATGCCTACCGTTCCTTCATCTTGCCCCCAGTCCTGGCCCCCAATCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTACCGTTCCTTCATCTTGCCCCCAGTCCTGGCCCCCAATCAGGA  450

seq1  AGTGTGAGCCCCAACCTCTGTTCATATCTCCTGCTCTCCAGTGAAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGCCCCAACCTCTGTTCATATCTCCTGCTCTCCAGTGAAGTCTT  500

seq1  TGTGCCTCACCTCGGCAAAGCCTCAGCTCTGGGTGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCACCTCGGCAAAGCCTCAGCTCTGGGTGAATTC  540

seq1: chr19_5607441_5608518
seq2: B6Ng01-316K23.g_67_1135

seq1  GAATTCAATAAAAACAGTGACCTGCTCATAGGCAGAATGGTCAACTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAAACAGTGACCTGCTCATAGGCAGAATGGTCAACTGTTC  50

seq1  TGAGCAGGAAAAGGTTGTTCATGTGACTCACTCCAGCCCAGCCGTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGAAAAGGTTGTTCATGTGACTCACTCCAGCCCAGCCGTGCCCA  100

seq1  AGCCACTAACCTTGTTTTTCCGTCCATCAATCTCAAAAAAGGAGATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTAACCTTGTTTTTCCGTCCATCAATCTCAAAAAAGGAGATGGTG  150

seq1  CCCTTGCGGTAAATTTCATTGCCTGGAGGGTGCCGAAGATCACATTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCGGTAAATTTCATTGCCTGGAGGGTGCCGAAGATCACATTTGGT  200

seq1  CTAAGGACAAAAGGAGGATCAGGTGGGGACTGGTGAGGGTACTCTGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGACAAAAGGAGGATCAGGTGGGGACTGGTGAGGGTACTCTGGATA  250

seq1  GGCAGCCTCCCAAGACCCCTCATACCAAGTGGCGTTGCAGACACTTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTCCCAAGACCCCTCATACCAAGTGGCGTTGCAGACACTTGAGG  300

seq1  CTACGGCCATATTTGAGGCAAAATTCGCACAGGTAGAGGACGGGTAGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGCCATATTTGAGGCAAAATTCGCACAGGTAGAGGACGGGTAGCGT  350

seq1  GGTAAGCTCTTGTGGGTACGGGGAGAAGTACCACGGCTTGAGGCGGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCTCTTGTGGGTACGGGGAGAAGTACCACGGCTTGAGGCGGTGCC  400

seq1  GGCCAAGCTCAATACACTCAATGTTCTTCATCCGGGTGACAATGTCGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCTCAATACACTCAATGTTCTTCATCCGGGTGACAATGTCGTCG  450

seq1  TGGCTCCGGTCAGACACCAGACTGCCAGTCATTCGTGGTGCTGACGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGGTCAGACACCAGACTGCCAGTCATTCGTGGTGCTGACGGTAT  500

seq1  TCCATCTGAGCTGTCCTGAGAATCCTGCCCAAGGCAGATGGCAAATACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGAGCTGTCCTGAGAATCCTGCCCAAGGCAGATGGCAAATACTA  550

seq1  GATGGTAGCAGTTAAGCAGAGCGTGGCGCACGACACTGCCATTGGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAGCAGTTAAGCAGAGCGTGGCGCACGACACTGCCATTGGCTTCT  600

seq1  TCCTGCAAGTCTAACATCAGCTAAGGGCAAAGCACCAACCTCCACTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAGTCTAACATCAGCTAAGGGCAAAGCACCAACCTCCACTTCCA  650

seq1  AAATAAAGCGAGGCTGAGAAACTGAGAGTAGAAGAGGCCCAGGGGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCGAGGCTGAGAAACTGAGAGTAGAAGAGGCCCAGGGGTTCAT  700

seq1  CTGCTTGGCTCCCAGCCACCACCCTCCCTGCCTAAGGCCTCACCGAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGCTCCCAGCCACCACCCTCCCTGCCTAAGGCCTCACCGAGTGA  750

seq1  ACACCATGCCCAAGCCCACTCCCCCTTTCCCGGCTTCCCTCTCCCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGCCCAAGCCCACTCCCCCTTTCCCGGCTTCCCTCTCCCTCTGC  800

seq1  TCCTCAAGACCCACCTCATCAGTGCCCAAGCAATTAGATTTCCGCTTCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGACCCACCTCATCAGTGCCCAAGCAATTAGATTTCCGCTTCCG  850

seq1  TCCAGGCTGGGCTGCCACTGCCCTACGGGCTGACCCATTCTGTGGACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTGGGCTGCCACTGCCCTACGGGCTGACCCATTCTGTGGACAAG  900

seq1  ACACAAGAGAAAGAGCGACCGTGAGATGATCCTGGAGGAGGATGCTAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGAAAGAGCGACCGTGAGATGATCCTGGAGGAGGATGCTAGAC  950

seq1  AGCAAGGAATAAGAGGGGAAAGACCAGGCAGGCTGTTGGGATGGCTCAGT  1000
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  AGCAAGGAATAAGAGGGGAAAGACCAGGCA-GCTGTTGGGAT-GCTCAGT  998

seq1  GGTTAAGAGCCCTGATCTTCCAGAGGACTTCCTGGGTTCTTTTCCCAGGA  1050
      |||  |||||||||||||| |||||   |||||||| |||||| ||||||
seq2  GGT--AGAGCCCTGATCTT-CAGAGACTTTCCTGGG-TCTTTT-CCAGGA  1043

seq1  CCCACAGAGTGGCTCACAACCATCTCTA  1078
       ||||||||| |||||| || |||||||
seq2  -CCACAGAGT-GCTCACCACAATCTCTA  1069