BAC Information

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BAC

Clone NameB6Ng01-316P12
Chromosome19 (Build37)8 (Build37)
Map Location 49,755,443 - 49,756,606123,522,244 - 123,522,336
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316P12.bB6Ng01-316P12.g
ACCGA107232GA107233
length1,16397
definitionB6Ng01-316P12.b B6Ng01-316P12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,755,443 - 49,756,606)(123,522,244 - 123,522,336)
sequence
gaattcctttcctcgtgatttgtcaggcagagtgaaaggacattgttggt
aagctaccttgctcagactttaccgtgttacagagcactcagtgtatttg
ttattggtcaagttagtcagctgtgtgctcataaaggaacacgcaattat
ttttgcagtatcaagtttagaaaatgccagagggagccataaatagtgat
tggggcttcctataagagctttgtaattagttaattgactgttaacttac
actgcacgctctatatcatatacactccgctctttatgacagaagaacta
aggggaaagcatccacagcaggctgtggcttgaaactacttttttatcct
cacaccaaggttgctatagagagaaagatgccaaggactttaaggtctcg
gtgcataattcagaagtatgcacagctgctcaggtctgagtgggctgcct
ctgtgtgctttagactattggcatgaggcttggtgctagcattctgtgac
taattgactcaattctataggttccagtagaatacaaaagctgcccaact
atagctggaaaagaagaaaagattctgctctgttccctttctttctttaa
gccctaaggagaggataattagtttttataatctttagattatttttact
taggagaccacccaagttcctattctacaatgggaaaataaaccttttcc
aacaaaacaaaaatgttttctgtattgctttgtaaatcttcatcgtggat
atatggcttaatgtgtgcttttatcataccgacttgtgcactgaatttta
aaaccaaagagcttttcttccctcaaggaagttttcaagaaaagatagca
tccttcaactttcaattaaaagaataaaattccgtacactttcctataag
ctctccattcagtacatgatggtcttattatggcttgcttaactcacctg
ctttgcagtctagtccttgacactagtgtctaaagaggtatttatttact
ttccttgtttatctcatgattatctttaaattagattaagcatctcataa
agatgtgattccaccactgggtggcacttacaagatcattttatcactgg
gaacagaagcctttgccacatgaacacaaccttttttcctaagttgggtg
caaatatctattt

actttgtagacaaggctggcctcaaactcagaaatccacctgcctctgcc
tcccaagtgctgggattaagggcatgtgccaccaccaccgggcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49755443_49756606
seq2: B6Ng01-316P12.b_50_1212

seq1  GAATTCCTTTCCTCGTGATTTGTCAGGCAGAGTGAAAGGACATTGTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCTCGTGATTTGTCAGGCAGAGTGAAAGGACATTGTTGGT  50

seq1  AAGCTACCTTGCTCAGACTTTACCGTGTTACAGAGCACTCAGTGTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCTTGCTCAGACTTTACCGTGTTACAGAGCACTCAGTGTATTTG  100

seq1  TTATTGGTCAAGTTAGTCAGCTGTGTGCTCATAAAGGAACACGCAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTCAAGTTAGTCAGCTGTGTGCTCATAAAGGAACACGCAATTAT  150

seq1  TTTTGCAGTATCAAGTTTAGAAAATGCCAGAGGGAGCCATAAATAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTATCAAGTTTAGAAAATGCCAGAGGGAGCCATAAATAGTGAT  200

seq1  TGGGGCTTCCTATAAGAGCTTTGTAATTAGTTAATTGACTGTTAACTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTCCTATAAGAGCTTTGTAATTAGTTAATTGACTGTTAACTTAC  250

seq1  ACTGCACGCTCTATATCATATACACTCCGCTCTTTATGACAGAAGAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACGCTCTATATCATATACACTCCGCTCTTTATGACAGAAGAACTA  300

seq1  AGGGGAAAGCATCCACAGCAGGCTGTGGCTTGAAACTACTTTTTTATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGCATCCACAGCAGGCTGTGGCTTGAAACTACTTTTTTATCCT  350

seq1  CACACCAAGGTTGCTATAGAGAGAAAGATGCCAAGGACTTTAAGGTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAGGTTGCTATAGAGAGAAAGATGCCAAGGACTTTAAGGTCTCG  400

seq1  GTGCATAATTCAGAAGTATGCACAGCTGCTCAGGTCTGAGTGGGCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAATTCAGAAGTATGCACAGCTGCTCAGGTCTGAGTGGGCTGCCT  450

seq1  CTGTGTGCTTTAGACTATTGGCATGAGGCTTGGTGCTAGCATTCTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCTTTAGACTATTGGCATGAGGCTTGGTGCTAGCATTCTGTGAC  500

seq1  TAATTGACTCAATTCTATAGGTTCCAGTAGAATACAAAAGCTGCCCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGACTCAATTCTATAGGTTCCAGTAGAATACAAAAGCTGCCCAACT  550

seq1  ATAGCTGGAAAAGAAGAAAAGATTCTGCTCTGTTCCCTTTCTTTCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGGAAAAGAAGAAAAGATTCTGCTCTGTTCCCTTTCTTTCTTTAA  600

seq1  GCCCTAAGGAGAGGATAATTAGTTTTTATAATCTTTAGATTATTTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGGAGAGGATAATTAGTTTTTATAATCTTTAGATTATTTTTACT  650

seq1  TAGGAGACCACCCAAGTTCCTATTCTACAATGGGAAAATAAACCTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACCACCCAAGTTCCTATTCTACAATGGGAAAATAAACCTTTTCC  700

seq1  AACAAAACAAAAATGTTTTCTGTATTGCTTTGTAAATCTTCATCGTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAATGTTTTCTGTATTGCTTTGTAAATCTTCATCGTGGAT  750

seq1  ATATGGCTTAATGTGTGCTTTTATCATACCGACTTGTGCACTGAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCTTAATGTGTGCTTTTATCATACCGACTTGTGCACTGAATTTTA  800

seq1  AAACCAAAGAGCTTTTCTTCCCTCAAGGAAGTTTTCAAG-AAAGATAGCA  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACCAAAGAGCTTTTCTTCCCTCAAGGAAGTTTTCAAGAAAAGATAGCA  850

seq1  TCCTTCAACTTTCAATTAAAAGAATAAAATTCCGTACACTTTCCTATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAACTTTCAATTAAAAGAATAAAATTCCGTACACTTTCCTATAAG  900

seq1  CTCTCCATTCAGTACATGATGGTCTTATTATGGCTTGCTTAACTCACCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATTCAGTACATGATGGTCTTATTATGGCTTGCTTAACTCACCTG  950

seq1  CTTTGCAGTCTAGTCCTTGACACTAGTGTCTAAAGAGGTATTTATTTAC-  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTGCAGTCTAGTCCTTGACACTAGTGTCTAAAGAGGTATTTATTTACT  1000

seq1  TTCCTTGTTTATCTCATGAATTATCTTTAAATTAAGATTTAAGCATCTCA  1048
      |||||||||||||||||| |||||||||||||| ||| ||||||||||||
seq2  TTCCTTGTTTATCTCATG-ATTATCTTTAAATT-AGA-TTAAGCATCTCA  1047

seq1  TAAAGATGTGATTC--ACACT-GGTGGCACTTACAAGATTCATTTTATTC  1095
      ||||||||||||||   |||| |||||||||||||||| |||||||||  
seq2  TAAAGATGTGATTCCACCACTGGGTGGCACTTACAAGA-TCATTTTAT--  1094

seq1  CACT-GGAACAG-AGCCTTTGCCACCATTGACACAA-CTTTTTTCCTAAG  1142
      |||| ||||||| ||||||||||| |||  |||||| |||||||||||||
seq2  CACTGGGAACAGAAGCCTTTGCCA-CATGAACACAACCTTTTTTCCTAAG  1143

seq1  TTGTGTGCATATTATTCTATTT  1164
      ||| ||||| ||   |||||||
seq2  TTGGGTGCAAAT--ATCTATTT  1163


seq1: chr8_123522244_123522336
seq2: B6Ng01-316P12.g_80_172 (reverse)

seq1  AGAAGCCGGGCTGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGC  50
      ||||||| ||  |||||||  ||  || ||||||||||||||||||||||
seq2  AGAAGCCCGGTGGTGGTGGCACATGCCCTTAATCCCAGCACTTGGGAGGC  50

seq1  AGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA  93
      ||||||||||||||||||||||| ||||||||||| |||||||
seq2  AGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTTGTCTACA  93


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