BAC Information

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BAC

Clone NameB6Ng01-317F08
Chromosome19 (Build37)
Map Location 28,126,199 - 28,127,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F08.bB6Ng01-317F08.g
ACCGA107505GA107506
length1,2501,186
definitionB6Ng01-317F08.b B6Ng01-317F08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaccagagtgattttgagatcatgatgggtaaagaagtaggga
caatacgtacacacaatgacccattaattcttcaagggacagcagagagg
taaatggtagctgaaatgttaagtcaaagggacactgctgtctgtctgcc
tattctctgggctgtcctgatgggtaatctaaggcttgttttagtttgaa
cagatccaacaaaatgaaactgataaggttatagaaacagaaaacatgat
agtaaaagttcctttaaaaagataagaggcagtaggtgaagaggttgggc
tggcatagaatctcctttgttggttgcagtcagaagggaaataattaatg
caagcagatatcaagtgcctgctgaggtggctggctaatgaagtcatatt
tattagtgtggaaccaagttaaagaaaggcaaggaagacgatgctggaaa
tcttaaataatcttccttgggtttggcatgaacatcttcatgtacttttg
taggctgactccaatgacaatttaattttcagagcttccatcaaaatgtc
tttcacttgattaatcttataccagtggtggtgttgcctgcagaaacaga
agacctgtctatgccctgagcagtctggtttctctacaagaagggagtca
ctggaccacaaagaaaaagctttgtggcccagacaactgactttggtatg
tgtttccttttctggaaccatatggtcacctgattagttaaatgtcatca
accacaaataaggtgatatttacagaagagctggatttgacctgaccaag
tcagaaggcaggaatgatctacagctcttctcactgttaatccgaagtga
gttgactgagaatctatgaagcatgaatttccatcaacactttcaggatg
ctggaacctgaatgcattcacatagtcactggttttgtatgtgttaaact
ttgctacatagcatatttgaattgtaattagtttagattatagccccttt
ttttgtttaacttttcttttatctccactcccctgagaacattgctccag
gcacctttgaggtctgattaggggagcagtttttagaagaattattttta
cctgggttcagtaaggatgaattctttatgctgtttcacagccaatgccc
gaggcagttaagttaatgggttcatctcttgcggggcacaggctttctgg
gaagactctaatgtggtagacacacaaagagtatcaggagactctcccct

gaattccttgtttagttctgtaccccattttttaatagggttatttgatt
ttctgtagtccatcttcttgagttcaatatagaacttgaagtcctagcca
gaacaattcgacaacaaaaggagatcaaggggatacaaattggaaaggaa
gaagtcaaaatatcactacttgcagatgctatgatagtatatataagtga
ccctaaaaattccaccagggaactcctaaacctgataaacagcttcaatg
aagtagctggatataaaattaactcaaacaaatcagtggccattctttac
acaaagaataaacaggctgagaaacaaattagggaaacaacacccttcac
aatagtcaaaaataatataaaataccttggtgtgactctaactaaggaag
tgaaagatctgtatcatgagaacttcaagtctctgaagaaagaaatcgaa
gaaaatctcagaaggtggaaagatctcccatgctcatggattggcaggat
taacatagtcgaaatggctatcttgctgaaagcaatctacagattcaatg
caatccccatcaaaattccaactcaattcttcactgagttagaaagggca
atttgcaaattcatctggaataacaaaaaacctagggtagcagaaattat
tctcaacaataacagaacctctagtggaatcactatgcctgacctcaagc
tgtactacagagtaattgtgataaaaattgcatggtactggtacagggac
acgcaggtagatcaatggaatagaattgaagacccagaaatgaatccaca
cagctatggtcacttgattgagggagctaaaaactccaatggaaaaaagc
acaactggcggttatcatgtagaagaatgcaaattgatccattcttatct
ccttgtacaaagctcaagtccaagtggatcaaggaactccacataaaacc
agagacactggaactcatagagaagaaagtagggaaagcctcgaagatat
gggcacaggggaaaaattcctgaacaagaacagcaatggcttgtgctgta
agatctagaatggcaaatggggactcataaatgcacagttctcacgctgt
ccatagaaaaagacccaactgttggtagatctaccatcataatcagatat
ggactaaatacttgtcttccacacaagggccgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28126199_28127429
seq2: B6Ng01-317F08.b_45_1294 (reverse)

seq1  AGGGGAG---GTCCTGA-AC-CTTTGTGT------CACCATAGAG-CTTC  38
      |||||||    |||||| || ||||||||      |||  ||||| ||||
seq2  AGGGGAGAGTCTCCTGATACTCTTTGTGTGTCTACCACATTAGAGTCTTC  50

seq1  CCAGAA--GCTGTGCCCCGCAAGAAGGATGAA--CAATAACTTAACTGCC  84
      ||||||   |||||||||||||||  ||||||  || |||||||||||||
seq2  CCAGAAAGCCTGTGCCCCGCAAGA--GATGAACCCATTAACTTAACTGCC  98

seq1  TCCGGGCA-TGGCTGTG-AACAGCAT-AAGA--TCATCC-TACTGGACCC  128
      | |||||| |||||||| |||||||| ||||  |||||| ||||| ||||
seq2  T-CGGGCATTGGCTGTGAAACAGCATAAAGAATTCATCCTTACTGAACCC  147

seq1  AAGGTAAAATTATCTCT----AAAACTGCTTCCCCTTAATCAGACCTCAA  174
       |||||||| ||  |||    |||||||||  ||| ||||||||||||||
seq2  -AGGTAAAAATAATTCTTCTAAAAACTGCT--CCCCTAATCAGACCTCAA  194

seq1  AGGTGCCTGGAGCAATGTCCTCAGGGGAGT-GAGATAAAAGAAAAGTTAA  223
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AGGTGCCTGGAGCAATGTTCTCAGGGGAGTGGAGATAAAAGAAAAGTTAA  244

seq1  ACCAAAAAAAGGGGCTATAATCTTAACTAATTACAATTCAAATATGCTAT  273
      | ||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  A-CAAAAAAAGGGGCTATAATCTAAACTAATTACAATTCAAATATGCTA-  292

seq1  TGTAGCAAAGTTTAACACATACAAAACCAGTGACTATGTGAATGCATTCA  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAAGTTTAACACATACAAAACCAGTGACTATGTGAATGCATTCA  342

seq1  GGTTCCAGCATCCTGAAAGTGTTGATGGAAATTCATGCTTCATAGATTCT  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGCATCCTGAAAGTGTTGATGGAAATTCATGCTTCATAGATTCT  392

seq1  CAGTCAACTCACTTCGGATTAACAGTGAGAAGAGCTGTAGATCATTCCTG  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACTCACTTCGGATTAACAGTGAGAAGAGCTGTAGATCATTCCTG  442

seq1  CCTTCTGACTTGGTCAGGTCAAATCCAGCTCTTCTGTAAATATCACCTTA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGACTTGGTCAGGTCAAATCCAGCTCTTCTGTAAATATCACCTTA  492

seq1  TTTGTGGTTGATGACATTTAACTAATCAGGTGACCATATGGTTCCAGAAA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTGATGACATTTAACTAATCAGGTGACCATATGGTTCCAGAAA  542

seq1  AGGAAACACATACCAAAGTCAGTTGTCTGGGCCACAAAGCTTTTTCTTTG  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACATACCAAAGTCAGTTGTCTGGGCCACAAAGCTTTTTCTTTG  592

seq1  TGGTCCAGTGACTCCCTTCTTGTAGAGAAACCAGACTGCTCAGGGCATAG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGTGACTCCCTTCTTGTAGAGAAACCAGACTGCTCAGGGCATAG  642

seq1  ACAGGTCTTCTGTTTCTGCAGGCAACACCACCACTGGTATAAGATTAATC  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTTCTGTTTCTGCAGGCAACACCACCACTGGTATAAGATTAATC  692

seq1  AAGTGAAAGACATTTTGATGGAAGCTCTGAAAATTAAATTGTCATTGGAG  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGACATTTTGATGGAAGCTCTGAAAATTAAATTGTCATTGGAG  742

seq1  TCAGCCTACAAAAGTACATGAAGATGTTCATGCCAAACCCAAGGAAGATT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTACAAAAGTACATGAAGATGTTCATGCCAAACCCAAGGAAGATT  792

seq1  ATTTAAGATTTCCAGCATCGTCTTCCTTGCCTTTCTTTAACTTGGTTCCA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATTTCCAGCATCGTCTTCCTTGCCTTTCTTTAACTTGGTTCCA  842

seq1  CACTAATAAATATGACTTCATTAGCCAGCCACCTCAGCAGGCACTTGATA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAATATGACTTCATTAGCCAGCCACCTCAGCAGGCACTTGATA  892

seq1  TCTGCTTGCATTAATTATTTCCCTTCTGACTGCAACCAACAAAGGAGATT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCATTAATTATTTCCCTTCTGACTGCAACCAACAAAGGAGATT  942

seq1  CTATGCCAGCCCAACCTCTTCACCTACTGCCTCTTATCTTTTTAAAGGAA  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGCCCAACCTCTTCACCTACTGCCTCTTATCTTTTTAAAGGAA  992

seq1  CTTTTACTATCATGTTTTCTGTTTCTATAACCTTATCAGTTTCATTTTGT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTATCATGTTTTCTGTTTCTATAACCTTATCAGTTTCATTTTGT  1042

seq1  TGGATCTGTTCAAACTAAAACAAGCCTTAGATTACCCATCAGGACAGCCC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTGTTCAAACTAAAACAAGCCTTAGATTACCCATCAGGACAGCCC  1092

seq1  AGAGAATAGGCAGACAGACAGCAGTGTCCCTTTGACTTAACATTTCAGCT  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGGCAGACAGACAGCAGTGTCCCTTTGACTTAACATTTCAGCT  1142

seq1  ACCATTTACCTCTCTGCTGTCCCTTGAAGAATTAATGGGTCATTGTGTGT  1173
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTACCTCTCTGCTGTCCCTTGAAGAATTAATGGGTCATTGTGTGT  1192

seq1  ACGTATTGTCCCTACTTCTTTACCCATCATGATCTCAAAATCACTCTGGT  1223
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATTGTCCCTACTTCTTTACCCATCATGATCTCAAAATCACTCTGGT  1242

seq1  AGGAATTC  1231
      ||||||||
seq2  AGGAATTC  1250