BAC Information

Click to search

BAC

Clone NameB6Ng01-319P14
Chromosome19 (Build37)
Map Location 15,612,091 - 15,741,099
singlet/doubletdoublet
Overlap genenone
Upstream geneTle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319P14.bB6Ng01-319P14.g
ACCGA109471GA109472
length1,008785
definitionB6Ng01-319P14.b B6Ng01-319P14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,612,091 - 15,613,099)(15,740,315 - 15,741,099)
sequence
gaattcaactcaggctggcagtatttctccagacatgacaaacagagaaa
cttgattgaggaacagcctgttcaagagagggagaaatgcaggcataaga
tttatttccttttttttttttctgatctcctattgcccattggtcaatgc
ataataccatgagtcatcttgcacacttctggttgacagctcacattcta
cttcctctgctgtagggtatcatccaaatgaaacagaaagaaatcagaaa
tatgggaaaacaggctattccatctggctgctctgggataatcaaagaga
actgcacttgttcaaatgagtaattggcagtccctggaaggcagaaagag
gaaagagttcttagtaaccataactaagactgaacccattgctgagggct
aagaaccaatagcacctagagtcttgaaaaagcccattaacatatgcatg
atattagcctccatattagatgacttatataatcccatacgttgggtttt
accattactgctttaagcataatacatttaagtttattcaatggatagtt
cctttttttcaaaaagattttatttatttatttatttatttatttaatgt
ttatttaatttaatatgagtacactgtcactgtcttcagacacaccagaa
gatggcattggatcccattatagatgattatgagccaccatgtggttgct
gggaaattgaactcagaacctctggaagagtagccagtgcttttaactgg
tgagccatctctccagctcccaataagcagttcttaacctaaaataagag
cagcagatgttattcttcacctaaagtcctagtatcacttctctttcttc
tttcatttctgtttgacatcagataatgcacttgtttattcacacacaat
catgtttcaacttcatgcattctgatatgtatcaatttatatatgtctaa
atagcatattcagaaaacaaactttttgttccaaatttcactaataatat
tgtgtgtg

gaattcctaagtgtagctcttcagttctcaaagcaatgcaagtcggatgg
tgctgatagccaggggaagaagacacccccaagggacagcccaggcttag
cactgcagttgactttggttttcagctgcaggtaaacaagacacaatcct
gtccttggaacggaaagacaaagctcagagtcggactttgtagacatctg
tgctggttgacacaattaacaactgtctacactgctgttcacacgctcca
agtggaaaaaccctttttctattgttcgctcaaccttcagtctatatgtg
tcccatcttaggcttcattaagttggctggtgtagaaccttgggttaatg
gcctaaaagcctcgggtcgactgagaagctctgcataggaaagttgattt
gaagtgataactgaagttctgatcaggagacccacaataccaagtgatat
tggccacttccagactgcagggaaactgacctgcagaggtatcttctatc
cccaaagttcccccttccttgtcctataaaaccttaagacctgtcacttt
ggctgagattctgtggcccttcagtgttctgattaaagagaagtctgctt
ctggagtcacctgtctgttttctgttatttccacatagcctgtatcaatg
tatcaatgtccagctgaccctcctagaacttgttttcagttgttgatcat
ttgaatgattaaaattcacttgggggcatggaaaactttctagtaaagtc
cattttatccattataggaagattttctccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15612091_15613099
seq2: B6Ng01-319P14.b_49_1056

seq1  GAATTCAACTCAGGCTGGCAGTATTTCTCCAGACATGACAAACAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCAGGCTGGCAGTATTTCTCCAGACATGACAAACAGAGAAA  50

seq1  CTTGATTGAGGAACAGCCTGTTCAAGAGAGGGAGAAATGCAGGCATAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGAGGAACAGCCTGTTCAAGAGAGGGAGAAATGCAGGCATAAGA  100

seq1  TTTATTTCCTTTTTTTTTTTTCTGATCTCCTATTGCCCATTGGTCAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCCTTTTTTTTTTTTCTGATCTCCTATTGCCCATTGGTCAATGC  150

seq1  ATAATACCATGAGTCATCTTGCACACTTCTGGTTGACAGCTCACATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACCATGAGTCATCTTGCACACTTCTGGTTGACAGCTCACATTCTA  200

seq1  CTTCCTCTGCTGTAGGGTATCATCCAAATGAAACAGAAAGAAATCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGCTGTAGGGTATCATCCAAATGAAACAGAAAGAAATCAGAAA  250

seq1  TATGGGAAAACAGGCTATTCCATCTGGCTGCTCTGGGATAATCAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAAACAGGCTATTCCATCTGGCTGCTCTGGGATAATCAAAGAGA  300

seq1  ACTGCACTTGTTCAAATGAGTAATTGGCAGTCCCTGGAAGGCAGAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTTGTTCAAATGAGTAATTGGCAGTCCCTGGAAGGCAGAAAGAG  350

seq1  GAAAGAGTTCTTAGTAACCATAACTAAGACTGAACCCATTGCTGAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTCTTAGTAACCATAACTAAGACTGAACCCATTGCTGAGGGCT  400

seq1  AAGAACCAATAGCACCTAGAGTCTTGAAAAAGCCCATTAACATATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAATAGCACCTAGAGTCTTGAAAAAGCCCATTAACATATGCATG  450

seq1  ATATTAGCCTCCATATTAGATGACTTATATAATCCCATACGTTGGGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCCTCCATATTAGATGACTTATATAATCCCATACGTTGGGTTTT  500

seq1  ACCATTACTGCTTTAAGCATAATACATTTAAGTTTATTCAATGGATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACTGCTTTAAGCATAATACATTTAAGTTTATTCAATGGATAGTT  550

seq1  CCTTTTTTTCAAAAAGATTTTATTTATTTATTTATTTATTTATTTAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTCAAAAAGATTTTATTTATTTATTTATTTATTTATTTAATGT  600

seq1  TTATTTAATTTAATATGAGTACACTGTCACTGTCTTCAGACACACCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATTTAATATGAGTACACTGTCACTGTCTTCAGACACACCAGAA  650

seq1  GATGGCATTGGATCCCATTATAGATGATTATGAGCCACCATGTGGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATTGGATCCCATTATAGATGATTATGAGCCACCATGTGGTTGCT  700

seq1  GGG-AATTGAACTCAGAACCTCTGGAAGAGTAGCCAGTGCTTTTAACTGG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTGAACTCAGAACCTCTGGAAGAGTAGCCAGTGCTTTTAACTGG  750

seq1  TGAGCCATCTCTCCAGCTCCCAATAAGCAGTTCTTAACCTAAAATAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTCCAGCTCCCAATAAGCAGTTCTTAACCTAAAATAAGAG  800

seq1  CAGCAGATGTTATTCTTCACCTAAAGTCCTAGTATCACTTCTCTTTCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATGTTATTCTTCACCTAAAGTCCTAGTATCACTTCTCTTTCTTC  850

seq1  TTTCATTTCTGTTTGACATCAGATAATGCACTTGTTTATTCACACACAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCTGTTTGACATCAGATAATGCACTTGTTTATTCACACACAAT  900

seq1  CATGTTTTCAACTTCATGCATTCTGATATGTTATCAATTTATATATGTCT  949
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATG-TTTCAACTTCATGCATTCTGATATG-TATCAATTTATATATGTCT  948

seq1  AAAATAGCAATATTCAGGAAAACAAACTTTTTGTTCCAAATTTCACTA--  997
       ||||||| ||||||| |||||||||||||||||||||||||||||||  
seq2  -AAATAGC-ATATTCA-GAAAACAAACTTTTTGTTCCAAATTTCACTAAT  995

seq1  TATA-TGTGTGTG  1009
       ||| ||||||||
seq2  AATATTGTGTGTG  1008


seq1: chr19_15740315_15741099
seq2: B6Ng01-319P14.g_70_854 (reverse)

seq1  GGGAGGGAGAAAATCTTCCTATAATGGATAAAATGGACTTTACTAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGAAAATCTTCCTATAATGGATAAAATGGACTTTACTAGAAAG  50

seq1  TTTTCCATGCCCCCAAGTGAATTTTAATCATTCAAATGATCAACAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGCCCCCAAGTGAATTTTAATCATTCAAATGATCAACAACTGA  100

seq1  AAACAAGTTCTAGGAGGGTCAGCTGGACATTGATACATTGATACAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTCTAGGAGGGTCAGCTGGACATTGATACATTGATACAGGCTA  150

seq1  TGTGGAAATAACAGAAAACAGACAGGTGACTCCAGAAGCAGACTTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATAACAGAAAACAGACAGGTGACTCCAGAAGCAGACTTCTCTT  200

seq1  TAATCAGAACACTGAAGGGCCACAGAATCTCAGCCAAAGTGACAGGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAACACTGAAGGGCCACAGAATCTCAGCCAAAGTGACAGGTCTT  250

seq1  AAGGTTTTATAGGACAAGGAAGGGGGAACTTTGGGGATAGAAGATACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTATAGGACAAGGAAGGGGGAACTTTGGGGATAGAAGATACCTC  300

seq1  TGCAGGTCAGTTTCCCTGCAGTCTGGAAGTGGCCAATATCACTTGGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCAGTTTCCCTGCAGTCTGGAAGTGGCCAATATCACTTGGTATT  350

seq1  GTGGGTCTCCTGATCAGAACTTCAGTTATCACTTCAAATCAACTTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTCCTGATCAGAACTTCAGTTATCACTTCAAATCAACTTTCCTA  400

seq1  TGCAGAGCTTCTCAGTCGACCCGAGGCTTTTAGGCCATTAACCCAAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCTTCTCAGTCGACCCGAGGCTTTTAGGCCATTAACCCAAGGTT  450

seq1  CTACACCAGCCAACTTAATGAAGCCTAAGATGGGACACATATAGACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCAGCCAACTTAATGAAGCCTAAGATGGGACACATATAGACTGAA  500

seq1  GGTTGAGCGAACAATAGAAAAAGGGTTTTTCCACTTGGAGCGTGTGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGCGAACAATAGAAAAAGGGTTTTTCCACTTGGAGCGTGTGAACA  550

seq1  GCAGTGTAGACAGTTGTTAATTGTGTCAACCAGCACAGATGTCTACAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTAGACAGTTGTTAATTGTGTCAACCAGCACAGATGTCTACAAAG  600

seq1  TCCGACTCTGAGCTTTGTCTTTCCGTTCCAAGGACAGGATTGTGTCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACTCTGAGCTTTGTCTTTCCGTTCCAAGGACAGGATTGTGTCTTGT  650

seq1  TTACCTGCAGCTGAAAACCAAAGTCAACTGCAGTGCTAAGCCTGGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCAGCTGAAAACCAAAGTCAACTGCAGTGCTAAGCCTGGGCTGT  700

seq1  CCCTTGGGGGTGTCTTCTTCCCCTGGCTATCAGCACCATCCGACTTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGGGTGTCTTCTTCCCCTGGCTATCAGCACCATCCGACTTGCAT  750

seq1  TGCTTTGAGAACTGAAGAGCTACACTTAGGAATTC  785
      |||||||||||||||||||||||||||||||||||
seq2  TGCTTTGAGAACTGAAGAGCTACACTTAGGAATTC  785


| Home | SequenceCutter | Blast | Download |