BAC Information

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BAC

Clone NameB6Ng01-321K13
Chromosome19 (Build37)
Map Location 45,902,342 - 46,046,961
singlet/doubletdoublet
Overlap gene9130011E15Rik, EG627939
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Downstream gene4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321K13.bB6Ng01-321K13.g
ACCGA110706GA110707
length5731,087
definitionB6Ng01-321K13.b B6Ng01-321K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,902,342 - 45,902,920)(46,045,903 - 46,046,961)
sequence
ttttattattttgtgtgtgtaagtgtttagactgaactgtgtaacatgtg
tgtgtagtacctttggagaccagaagagggcactgaatctcctagggcta
gaaatagatagttgtgagccaccatgtgggtgctgggaattgaacctagt
cttctgtaaaagcagccagtgcttttaacccctgagccattttccacccg
cctatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgtgccatggcc
taagtgtggaggccagagaataacttgcagattggctctctcctttcatc
aaacctgcagttaggcttggctgtaagcaccttacccactgagccatctt
gtcaatcctatgctcctgttatggctctgtcacactatgccatgtcctta
tgaatgtggcctaaaacagtcacaggatcaaacagatggttggaaggaca
gaatacggaatccaagagcttcatgttctctctctctctctctctctctc
tctccttaagatttattttatttatatgagtacactgtagctgctttaga
cacagcagaagatgtcatcagat
gaattcactatgtagacgaggcttgttcaaacttaacagagatccacttg
cctctgtctcttgagttctgggtttaaaggtgtgaaccgccatgcccagc
tttgtctgacatttctgaacttagataaaatatgagaagttacaaggtca
gcgatttgtggtgctggtgatcagtccatggtgttcgcatggtgggggct
gtcacgcagagtccatcctcgcctgcttttaggtatttgatacagggtct
tacagagttgaggctggcttcagacttacagagggtagaacctttttaaa
aaacattttttatactttatttttaggtttatttattttatgtttatgag
tgttcgtctgcatgtaaatctgtgtacttcatgtgtgcttggtgtctgaa
aggtctgaagagggtattggatcctttcgaattggagttatgaatgattt
tgagcctgttgagggtgctgggaaccgattatggatcctctacaataaca
acgaatgtttttaagcactcaaccatcttttcagcttgtctgtctcaagt
ttaaaaaaacgaaaacattaagtataaagaaaagccatcagagaccactg
tgcagacagagggaaaagccatcagagaccactgtgcagacagggaaacc
agctcctgaggcagcctcttagtgatgtttcctgggtgccctgagcctga
cgggctgggactcacttacacatggattcattgcagaggggatgatcctc
tggccattggaagaattgttgtgtgcctgtctatgtaatgtttgtgagca
cgcacgccatggtgcacacgtgcaggccgaagtctgactcaggtcatcag
gcttgtgtggaagcatctttacctgctgagccatcttgctggccctcctc
agttttgttttgttttgttttgtttgttttgttttttgagacagggtttc
tctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcc
tcgacttcaaaatccgcctgctctgcctccagtgctggataaggcatgtg
caccacaccggtccctctcagtctttagtgttctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45902342_45902920
seq2: B6Ng01-321K13.b_45_623

seq1  GAATTCTTTTATTATTTTGTGTGTGTAAGTGTTTAGACTGAACTGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTATTTTGTGTGTGTAAGTGTTTAGACTGAACTGTGTAA  50

seq1  CATGTGTGTGTAGTACCTTTGGAGACCAGAAGAGGGCACTGAATCTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTAGTACCTTTGGAGACCAGAAGAGGGCACTGAATCTCCTA  100

seq1  GGGCTAGAAATAGATAGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGAAATAGATAGTTGTGAGCCACCATGTGGGTGCTGGGAATTGAA  150

seq1  CCTAGTCTTCTGTAAAAGCAGCCAGTGCTTTTAACCCCTGAGCCATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTTCTGTAAAAGCAGCCAGTGCTTTTAACCCCTGAGCCATTTTC  200

seq1  CACCCGCCTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGCCTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTGCC  250

seq1  ATGGCCTAAGTGTGGAGGCCAGAGAATAACTTGCAGATTGGCTCTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAAGTGTGGAGGCCAGAGAATAACTTGCAGATTGGCTCTCTCCT  300

seq1  TTCATCAAACCTGCAGTTAGGCTTGGCTGTAAGCACCTTACCCACTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAACCTGCAGTTAGGCTTGGCTGTAAGCACCTTACCCACTGAGC  350

seq1  CATCTTGTCAATCCTATGCTCCTGTTATGGCTCTGTCACACTATGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCAATCCTATGCTCCTGTTATGGCTCTGTCACACTATGCCATG  400

seq1  TCCTTATGAATGTGGCCTAAAACAGTCACAGGATCAAACAGATGGTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGAATGTGGCCTAAAACAGTCACAGGATCAAACAGATGGTTGGA  450

seq1  AGGACAGAATACGGAATCCAAGAGCTTCATGTTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAATACGGAATCCAAGAGCTTCATGTTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTCTCTCCTTAAGATTTATTTTATTTATATGAGTACACTGTAGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCCTTAAGATTTATTTTATTTATATGAGTACACTGTAGCTGC  550

seq1  TTTAGACACAGCAGAAGAGGTCATCAGAT  579
      |||||||||||||||||| ||||||||||
seq2  TTTAGACACAGCAGAAGATGTCATCAGAT  579

seq1: chr19_46045903_46046961
seq2: B6Ng01-321K13.g_105_1152 (reverse)

seq1  GAAAG-ACACTAAAGACCTGAGGAGGGGACGGGTGTGGTGGCACATGCCT  49
      ||||| |||||||||| |||||   ||||| |||||||| ||||||||||
seq2  GAAAGAACACTAAAGA-CTGAG--AGGGACCGGTGTGGT-GCACATGCCT  46

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTGAGTTCGAGGC  99
      |  || ||||||||  ||||||||| |||||||||||||||  |||||||
seq2  T--AT-CCAGCACT--GGAGGCAGA-GCAGGCGGATTTTGAAGTCGAGGC  90

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  140

seq1  ACCCTGTCTCAAAAAAACAAAACAAAACAAAACAAAACAAAACAAAACTG  199
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACCCTGTCTC-AAAAAACAAAAC-AAACAAAACAAAACAAAACAAAACTG  188

seq1  AGGAGGGCCAGCAAGATGGCTCAGCAGGTAAAGATGCTTCCACACAAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCCAGCAAGATGGCTCAGCAGGTAAAGATGCTTCCACACAAGCC  238

seq1  TGATGACCTGAGTCAGACTTCGGCCTGCACGTGTGCACCATGGCGTGCGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCTGAGTCAGACTTCGGCCTGCACGTGTGCACCATGGCGTGCGT  288

seq1  GCTCACAAACATTACATAGACAGGCACACAACAATTCTTCCAATGGCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAAACATTACATAGACAGGCACACAACAATTCTTCCAATGGCCAG  338

seq1  AGGATCATCCCCTCTGCAATGAATCCATGTGTAAGTGAGTCCCAGCCCGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATCCCCTCTGCAATGAATCCATGTGTAAGTGAGTCCCAGCCCGT  388

seq1  CAGGCTCAGGGCACCCAGGAAACATCACTAAGAGGCTGCCTCAGGAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGGGCACCCAGGAAACATCACTAAGAGGCTGCCTCAGGAGCTG  438

seq1  GTTTCCCTGTCTGCACAGTGGTCTCTGATGGCTTTTCCCTCTGTCTGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTGTCTGCACAGTGGTCTCTGATGGCTTTTCCCTCTGTCTGCAC  488

seq1  AGTGGTCTCTGATGGCTTTTCTTTATACTTAATGTTTTCGTTTTTTTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCTGATGGCTTTTCTTTATACTTAATGTTTTCGTTTTTTTAAA  538

seq1  CTTGAGACAGACAAGCTGAAAAGATGGTTGAGTGCTTAAAAACATTCGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACAGACAAGCTGAAAAGATGGTTGAGTGCTTAAAAACATTCGTT  588

seq1  GTTATTGTAGAGGATCCATAATCGGTTCCCAGCACCCTCAACAGGCTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTAGAGGATCCATAATCGGTTCCCAGCACCCTCAACAGGCTCAA  638

seq1  AATCATTCATAACTCCAATTCGAAAGGATCCAATACCCTCTTCAGACCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCATAACTCCAATTCGAAAGGATCCAATACCCTCTTCAGACCTT  688

seq1  TCAGACACCAAGCACACATGAAGTACACAGATTTACATGCAGACGAACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACCAAGCACACATGAAGTACACAGATTTACATGCAGACGAACAC  738

seq1  TCATAAACATAAAATAAATAAACCTAAAAATAAAGTATAAAAAATGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACATAAAATAAATAAACCTAAAAATAAAGTATAAAAAATGTTTT  788

seq1  TTAAAAAGGTTCTACCCTCTGTAAGTCTGAAGCCAGCCTCAACTCTGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGTTCTACCCTCTGTAAGTCTGAAGCCAGCCTCAACTCTGTAA  838

seq1  GACCCTGTATCAAATACCTAAAAGCAGGCGAGGATGGACTCTGCGTGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTATCAAATACCTAAAAGCAGGCGAGGATGGACTCTGCGTGACA  888

seq1  GCCCCCACCATGCGAACACCATGGACTGATCACCAGCACCACAAATCGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCATGCGAACACCATGGACTGATCACCAGCACCACAAATCGCT  938

seq1  GACCTTGTAACTTCTCATATTTTATCTAAGTTCAGAAATGTCAGACAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTAACTTCTCATATTTTATCTAAGTTCAGAAATGTCAGACAAAG  988

seq1  CTGGGCATGGCGGTTCACACCTTTAAACCCAGAACTCAAGAGACAGAGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGGCGGTTCACACCTTTAAACCCAGAACTCAAGAGACAGAGGC  1038

seq1  AAGTGGATCT  1059
      ||||||||||
seq2  AAGTGGATCT  1048