BAC Information

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BAC

Clone NameB6Ng01-322M09
Chromosome19 (Build37)
Map Location 40,451,928 - 40,636,866
singlet/doubletdoublet
Overlap geneSorbs1, Aldh18a1, LOC100043135
Upstream geneCyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, A930028N01Rik
Downstream gene4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322M09.bB6Ng01-322M09.g
ACCGA111530GA111531
length1,174833
definitionB6Ng01-322M09.b B6Ng01-322M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,635,709 - 40,636,866)(40,451,928 - 40,452,758)
sequence
gaattctccaaagccgggcagtggtggtgcacgcctttaatcccagcact
tgggaggtctaggcaggcggatttctgagtttgaggccagcctggtctat
agagtgagttccaagacagccagggctacgaagagaaaccctgtcttgaa
aaagcaaaaaacaaacaaacaagagttttccagtctttggtagagtttag
attagacataagtcactttaagaatgtttatcatcagccctcatgtggta
tgggagaatgagagcctgctgctgcccctgctactgtggtcactgacctg
gcctgagtggccatatgagctctgtgtaagcgagcagctttcattacctc
agttaattctcggtattaccctgtgaggaaatgctgctctttcttaggcc
cttgttctagactgcgtaaaagcagactctggggtacaaaatttaccagt
ctgtggtacggtttggatttggtttaagccagttctagagcattctcttt
cctatggaaggctcctccctccaatatctcgggattcccttcttcctgtt
gggaggggctaacttagtacgtgctcagggagaatctggtggggagatcc
caagcttagaaattcagcccagggcgcgcgcattggctctgggctgcggc
cggctcggcgacgctcctcgggcagctcactgcatggtcgtctggtgccc
ccgccgcctgcatccccgccgccgccccgcgacgcccaccgccgcctgcc
ctgccgccgccgcctgcgccgcctcgggaccggctgtatgattaggccac
aatcttcaatgagtagacatattcctcagttctgtggtgttctcggtcac
acatttatggagtttctgaagggcagtggagattactgccaggcacagca
cgacctctatgcagacaagtgaactgtagaaattcattactactccaccc
agaaacccccatagagtggataacctggacacaggcgtgttgaaattgaa
atctgcagaagcatttgacaagaagctcagacctggatggggtaacctca
tggcacttccctttgtatttgcttcagtattactgggatgaagaacactc
cactgccttcttgttaagggaggttcatttcatttgccggctgtctccca
aattcatacctcaaggccactgag
gaattccatggtctggcatactgagacattgacagacaggagccagggag
acaggagaggctgtgctcagagagttagatagaaggactcgggattcaag
tgctgtaacactagtgaggagagggagggcagggaagcccaaaagacaag
tgagccgcttcaaccggttctgagagagacagtgtagaagacacacaaac
attcctagattcttgccttggctggataacacggctgcaaaaggtaagtt
tctttgttcttctggttttcgggatcagaggtaacctgggggcctagcct
gggaggcctcactgcatctgggaacgaggcccatgtccccagtgtgtgat
tctcaccgcggttaccgtcatctttgcggttgtcaaagaatagcttggga
gggtcaggaggaggagcagggggtggttttcctgtgccaactgtggctgt
gccagggacaaggcagggagctggtgcctgagtgcctgcggcctccgagg
gagtgtctggggccgagtcacgtgcaacaggagggtagttttccgatgat
gcccggcaaatgttattggataaacacgggacatataagctgctgacctg
tttattccctgtggcctcacaacgtgtgttagagctcacattcttactgt
atactaatcgggaggctacatagtattgctggggttgggagggcacttca
aggcccatggaccccaaaagtaatgaacggggacatgatgcatttcgggg
agccaacctagctcccaggggaacagaggtgggtgtaggcagtgaggggt
tctgtttggctggggggtgctgggtgggattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40635709_40636866
seq2: B6Ng01-322M09.b_47_1220 (reverse)

seq1  CTCAGTG--CTTGA-GTATGAA-TTGGGAGAAA--CGGGCAATGAAATGA  44
      |||||||  ||||| ||||||| |||||||| |  |||  ||||||||||
seq2  CTCAGTGGCCTTGAGGTATGAATTTGGGAGACAGCCGGCAAATGAAATGA  50

seq1  ACCTCC--TAACAAGAA-GCAGT-GAG---TCTTCAATCCAGTAATACTG  87
      ||||||  ||||||||| ||||| |||   ||||||  ||||||||||||
seq2  ACCTCCCTTAACAAGAAGGCAGTGGAGTGTTCTTCATCCCAGTAATACTG  100

seq1  AGGC-AATACAAA-GGAAGTGCACTGAGGTTTACCCCATCCAGGTCTGAG  135
      | || |||||||| ||||||||  ||||| ||||||||||||||||||||
seq2  AAGCAAATACAAAGGGAAGTGCCATGAGG-TTACCCCATCCAGGTCTGAG  149

seq1  C-TCTTGTCAAATGC-TCTGCAGATTTCAA-TTCAACACGCCTGTGTCCA  182
      | ||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CTTCTTGTCAAATGCTTCTGCAGATTTCAATTTCAACACGCCTGTGTCCA  199

seq1  GGTTATCCACTCTTATGGGGGTTTCTTGGTGGAGTAGTAATGAATTTCTA  232
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GGTTATCCACTC-TATGGGGGTTTCTGGGTGGAGTAGTAATGAATTTCTA  248

seq1  CAGTTCACTTGTCTGCATAGAGGTCGTGCTGTGCCTGGCAGTAATCTCCA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACTTGTCTGCATAGAGGTCGTGCTGTGCCTGGCAGTAATCTCCA  298

seq1  CTGCCCTTCAGAAACTCCATAAATGTGTGACCGAGAACACCACAGAACTG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTCAGAAACTCCATAAATGTGTGACCGAGAACACCACAGAACTG  348

seq1  AGGAATATGTCTACTCATTGAAGATTGTGGCCTAATCATACAGCCGGTCC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATGTCTACTCATTGAAGATTGTGGCCTAATCATACAGCCGGTCC  398

seq1  CGAGGCGGCGCAGGCGGCGGCGGCAGGGCAGGCGGCGGTGGGCGTCGCGG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCGGCGCAGGCGGCGGCGGCAGGGCAGGCGGCGGTGGGCGTCGCGG  448

seq1  GGCGGCGGCGGGGATGCAGGCGGCGGGGGCACCAGACGACCATGCAGTGA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCGGCGGGGATGCAGGCGGCGGGGGCACCAGACGACCATGCAGTGA  498

seq1  GCTGCCCGAGGAGCGTCGCCGAGCCGGCCGCAGCCCAGAGCCAATGCGCG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCGAGGAGCGTCGCCGAGCCGGCCGCAGCCCAGAGCCAATGCGCG  548

seq1  CGCCCTGGGCTGAATTTCTAAGCTTGGGATCTCCCCACCAGATTCTCCCT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGGGCTGAATTTCTAAGCTTGGGATCTCCCCACCAGATTCTCCCT  598

seq1  GAGCACGTACTAAGTTAGCCCCTCCCAACAGGAAGAAGGGAATCCCGAGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGTACTAAGTTAGCCCCTCCCAACAGGAAGAAGGGAATCCCGAGA  648

seq1  TATTGGAGGGAGGAGCCTTCCATAGGAAAGAGAATGCTCTAGAACTGGCT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGGGAGGAGCCTTCCATAGGAAAGAGAATGCTCTAGAACTGGCT  698

seq1  TAAACCAAATCCAAACCGTACCACAGACTGGTAAATTTTGTACCCCAGAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAATCCAAACCGTACCACAGACTGGTAAATTTTGTACCCCAGAG  748

seq1  TCTGCTTTTACGCAGTCTAGAACAAGGGCCTAAGAAAGAGCAGCATTTCC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTACGCAGTCTAGAACAAGGGCCTAAGAAAGAGCAGCATTTCC  798

seq1  TCACAGGGTAATACCGAGAATTAACTGAGGTAATGAAAGCTGCTCGCTTA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGTAATACCGAGAATTAACTGAGGTAATGAAAGCTGCTCGCTTA  848

seq1  CACAGAGCTCATATGGCCACTCAGGCCAGGTCAGTGACCACAGTAGCAGG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTCATATGGCCACTCAGGCCAGGTCAGTGACCACAGTAGCAGG  898

seq1  GGCAGCAGCAGGCTCTCATTCTCCCATACCACATGAGGGCTGATGATAAA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCAGGCTCTCATTCTCCCATACCACATGAGGGCTGATGATAAA  948

seq1  CATTCTTAAAGTGACTTATGTCTAATCTAAACTCTACCAAAGACTGGAAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTAAAGTGACTTATGTCTAATCTAAACTCTACCAAAGACTGGAAA  998

seq1  ACTCTTGTTTGTTTGTTTTTTGCTTTTTCAAGACAGGGTTTCTCTTCGTA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTTTGTTTGTTTTTTGCTTTTTCAAGACAGGGTTTCTCTTCGTA  1048

seq1  GCCCTGGCTGTCTTGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCTTGGAACTCACTCTATAGACCAGGCTGGCCTCAAACTC  1098

seq1  AGAAATCCGCCTGCCTAGACCTCCCAAGTGCTGGGATTAAAGGCGTGCAC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCGCCTGCCTAGACCTCCCAAGTGCTGGGATTAAAGGCGTGCAC  1148

seq1  CACCACTGCCCGGCTTTGGAGAATTC  1158
      ||||||||||||||||||||||||||
seq2  CACCACTGCCCGGCTTTGGAGAATTC  1174

seq1: chr19_40451928_40452758
seq2: B6Ng01-322M09.g_70_902

seq1  GAATTCCATGGTCTGGCATACTGAGACATTGACAGACAGGAGCCAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTCTGGCATACTGAGACATTGACAGACAGGAGCCAGGGAG  50

seq1  ACAGGAGAGGCTGTGCTCAGAGAGTTAGATAGAAGGACTCGGGATTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGGCTGTGCTCAGAGAGTTAGATAGAAGGACTCGGGATTCAAG  100

seq1  TGCTGTAACACTAGTGAGGAGAGGGAGGGCAGGGAAGCCCAAAAGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAACACTAGTGAGGAGAGGGAGGGCAGGGAAGCCCAAAAGACAAG  150

seq1  TGAGCCGCTTCAACCGGTTCTGAGAGAGACAGTGTAGAAGACACACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGCTTCAACCGGTTCTGAGAGAGACAGTGTAGAAGACACACAAAC  200

seq1  ATTCCTAGATTCTTGCCTTGGCTGGATAACACGGCTGCAAAAGGTAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGATTCTTGCCTTGGCTGGATAACACGGCTGCAAAAGGTAAGTT  250

seq1  TCTTTGTTCTTCTGGTTTTCGGGATCAGAGGTAACCTGGGGGCCTAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTCTTCTGGTTTTCGGGATCAGAGGTAACCTGGGGGCCTAGCCT  300

seq1  GGGAGGCCTCACTGCATCTGGGAACGAGGCCCATGTCCCCAGTGTGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCTCACTGCATCTGGGAACGAGGCCCATGTCCCCAGTGTGTGAT  350

seq1  TCTCACCGCGGTTACCGTCATCTTTGCGGTTGTCAAAGAATAGCTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCGCGGTTACCGTCATCTTTGCGGTTGTCAAAGAATAGCTTGGGA  400

seq1  GGGTCAGGAGGAGGAGCAGGGGGTGGTTTTCCTGTGCCAACTGTGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGAGGAGGAGCAGGGGGTGGTTTTCCTGTGCCAACTGTGGCTGT  450

seq1  GCCAGGGACAAGGCAGGGAGCTGGTGCCTGAGTGCCTGCGGCCTCCGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGACAAGGCAGGGAGCTGGTGCCTGAGTGCCTGCGGCCTCCGAGG  500

seq1  GAGTGTCTGGGGCCGAGTCACGTGCAACAGGAGGGTAGTTTTCCGATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGGGGCCGAGTCACGTGCAACAGGAGGGTAGTTTTCCGATGAT  550

seq1  GCCCGGCAAATGTTATTGGATAAACACGGGACATATAAGCTGCTGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCAAATGTTATTGGATAAACACGGGACATATAAGCTGCTGACCTG  600

seq1  TTTATTCCCTGTGGCCTCACAACGTGTGTTAGAGCTCACATTCTTACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCTGTGGCCTCACAACGTGTGTTAGAGCTCACATTCTTACTGT  650

seq1  ATACTAATCGGGAGGCTACATAGTATTGCTGGGGTTGGGAGGGCACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAATCGGGAGGCTACATAGTATTGCTGGGGTTGGGAGGGCACTTCA  700

seq1  AGGCCCATGGACCCCAAAAGTAATGAACGGGGACATGATGCATTTCGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATGGACCCCAAAAGTAATGAACGGGGACATGATGCATTTCGGGG  750

seq1  AGCCAACCTAGCTCCCAGGGGAACAGAGGTGGGTGTAGGCAGTGAGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCTAGCTCCCAGGGGAACAGAGGTGGGTGTAGGCAGTGAGGGGT  800

seq1  TCTG-TTGGCT-GGGGGTGCTGGGTGGGATATA  831
      |||| |||||| |||||||||||||||||| ||
seq2  TCTGTTTGGCTGGGGGGTGCTGGGTGGGATTTA  833