BAC Information

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BAC

Clone NameB6Ng01-323A08
Chromosome19 (Build37)
Map Location 48,659,300 - 48,780,800
singlet/doubletdoublet
Overlap geneSorcs3
Upstream geneSlk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323A08.bB6Ng01-323A08.g
ACCGA111708GA111709
length1,0831,114
definitionB6Ng01-323A08.b B6Ng01-323A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,779,711 - 48,780,800)(48,659,300 - 48,660,417)
sequence
gaattccatgttacagtctctctgatcagtcagttgactttgacaggaat
gctggcctttcactagatgcagaggacccctctgggactttgggacagga
tgaattaacctagaagctaagactgtccaaagctcttagcatctcagttt
cttagaatgggctttgaggattgaacaatcttgctcattttctgggaagt
ttccatctaaagctcaaatgaatccatgacccacgagaatgccacaaacc
ttatcccaaaagccttaggtgaaaaacaactacagagaacttttcttacc
cgtggcaaccacaagtccaggcgctgtgtccttgctggagattcttccag
aggaatatgggttttcagagagctgcagatgcaagtgtagggaacagaag
ggctaaaaggaagaagaaaatagtttaatttcaagaaactcaagccatac
ccttgccctgcatgataagaggtgctgcagataggtatcatctagggaca
gcagcagtgtggatgctgaacttcagacccatctgcctgatgaatccagc
attttatacattagaagttgtcccaagtatcaccctagatccttcctccc
ttttactaacctagtatcaaatgccctcttctgcagtcaatctagccttc
aaggtctagttcatggctagctttaggaagcctagtagaccctaccttcc
aagaggatgacgaatatcttccagatatgataggaaccatcaaacccaac
agaatgaagtggaaaactacctgacaaagtccaggttctcaataagtttc
tcacaccatagtctgcatctgtgtttgtgtgttttaagcctacttataat
tttacttagaacattttaaaccatgatctgaaattcactgaagactggac
tcatttccatttactttcctatgcctatgcctagtatagaaacgggtttg
gtgatatatagagataaacctataaataaaatattatgacaagacaaatt
gagacattgagaaaatttgatgagagagtaggattagaatcatcaaggtt
cacagaagagagagagagagagagagatagaga

gaattcacagccagacaataaataagtctatttattttcattttagttac
tggtttcaatttttttattaccgtgcataaacaaagattggaagcaaaag
tgcatatgcatatttgtttgtaatctcccaattcctgtatgctggctgca
actcctgaaatcatttggcccatggtaccaactgcatctgagcttccagc
aagaagagcagagagagcaactgttggtgagagagggcagtgctgtggtg
ggggccaactctctgagttagcatggcagctctctggtcttcctcttcct
ggcactgatggattgactcattgtttttggcaatgcagctctttctgcct
ggggctgtgggcagaaagctgtttgagtcaggcgctctgtaccgtgccat
cttggcaattctgtgttttcagcagtttagtcaatgcaaggagtaagaga
aattgtaattgaggctgcttgtctataaatcatgccacagagagtgagca
cgtccaaatgttgggtccaatagaaacgggtgtccctcgcctggggatgg
gagagaggtgtaagaaaatagtcaaaggcatctctgtggttactgagcag
tgcagtaaggaggaaatagaaaacaaattcgaagtttcctggccaaatta
tgaagtctagatgggagtcagatggaagggaggcaaatagcgagaaatta
tcaaaccatagaatccagttggcgagggaagggaaggctcacaaacagag
caaacctatccctgacccagcctcccctttcccagcctaactatttttta
tcctggtaatttgtctctgttatgaaaacattgtcagcttagtatactca
gggcaataatgttacaagtcaaagagaaacaaacagaccacaataacaac
aacacaaaacagagacagacaggcagacacatcctctccgtgtggtgtgc
actgcgtatgttaagtgcagtcaaatagagcataactcccgggcagggat
catttagactgcttcatgacccacagctcttcctggagtgctttgcacac
tgttctggtgttggtgtctataggagtagttgagcgggacttccaaggta
ggcttggctgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48779711_48780800
seq2: B6Ng01-323A08.b_47_1129 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTTGAAACTTGATGATTCTT  50
      ||||| ||||||||||||||||||||| ||| |||| ||||||||||| |
seq2  TCTCTATCTCTCTCTCTCTCTCTCTCTTCTG-TGAACCTTGATGATTC-T  48

seq1  TATCTTACTCTCTTCATCAAATTTTCTCAATGTCTCAATTTGTCTTTGTC  100
       ||| ||||||| ||||||||||||||||||||||||||||||| |||||
seq2  AATCCTACTCTC-TCATCAAATTTTCTCAATGTCTCAATTTGTC-TTGTC  96

seq1  ATAATTATTTTTATTTTATAGGTTTATCTCTATATATCACCAAACCCGTT  150
      |||| ||||||   ||||||||||||||||||||||||||||||||||||
seq2  ATAA-TATTTT--ATTTATAGGTTTATCTCTATATATCACCAAACCCGTT  143

seq1  TCTATACTAGGCATAGGCATAGGAAAGTAAATGGAAATGAGTCCAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACTAGGCATAGGCATAGGAAAGTAAATGGAAATGAGTCCAGTCTT  193

seq1  CAGTGAATTTCAGATCATGGTTTAAAATGTTCTAAGTAAAATTATAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAATTTCAGATCATGGTTTAAAATGTTCTAAGTAAAATTATAAGTA  243

seq1  GGCTTAAAACACACAAACACAGATGCAGACTATGGTGTGAGAAACTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAAACACACAAACACAGATGCAGACTATGGTGTGAGAAACTTATT  293

seq1  GAGAACCTGGACTTTGTCAGGTAGTTTTCCACTTCATTCTGTTGGGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTGGACTTTGTCAGGTAGTTTTCCACTTCATTCTGTTGGGTTTG  343

seq1  ATGGTTCCTATCATATCTGGAAGATATTCGTCATCCTCTTGGAAGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCTATCATATCTGGAAGATATTCGTCATCCTCTTGGAAGGTAGG  393

seq1  GTCTACTAGGCTTCCTAAAGCTAGCCATGAACTAGACCTTGAAGGCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAGGCTTCCTAAAGCTAGCCATGAACTAGACCTTGAAGGCTAGA  443

seq1  TTGACTGCAGAAGAGGGCATTTGATACTAGGTTAGTAAAAGGGAGGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCAGAAGAGGGCATTTGATACTAGGTTAGTAAAAGGGAGGAAGG  493

seq1  ATCTAGGGTGATACTTGGGACAACTTCTAATGTATAAAATGCTGGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGTGATACTTGGGACAACTTCTAATGTATAAAATGCTGGATTCA  543

seq1  TCAGGCAGATGGGTCTGAAGTTCAGCATCCACACTGCTGCTGTCCCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGATGGGTCTGAAGTTCAGCATCCACACTGCTGCTGTCCCTAGA  593

seq1  TGATACCTATCTGCAGCACCTCTTATCATGCAGGGCAAGGGTATGGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTATCTGCAGCACCTCTTATCATGCAGGGCAAGGGTATGGCTTG  643

seq1  AGTTTCTTGAAATTAAACTATTTTCTTCTTCCTTTTAGCCCTTCTGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGAAATTAAACTATTTTCTTCTTCCTTTTAGCCCTTCTGTTCC  693

seq1  CTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGAAT  743

seq1  CTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGGGTAAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGGGTAAGAAAA  793

seq1  GTTCTCTGTAGTTGTTTTTCACCTAAGGCTTTTGGGATAAGGTTTGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGTAGTTGTTTTTCACCTAAGGCTTTTGGGATAAGGTTTGTGGC  843

seq1  ATTCTCGTGGGTCATGGATTCATTTGAGCTTTAGATGGAAACTTCCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCGTGGGTCATGGATTCATTTGAGCTTTAGATGGAAACTTCCCAGA  893

seq1  AAATGAGCAAGATTGTTCAATCCTCAAAGCCCATTCTAAGAAACTGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCAAGATTGTTCAATCCTCAAAGCCCATTCTAAGAAACTGAGAT  943

seq1  GCTAAGAGCTTTGGACAGTCTTAGCTTCTAGGTTAATTCATCCTGTCCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGCTTTGGACAGTCTTAGCTTCTAGGTTAATTCATCCTGTCCCA  993

seq1  AAGTCCCAGAGGGGTCCTCTGCATCTAGTGAAAGGCCAGCATTCCTGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGAGGGGTCCTCTGCATCTAGTGAAAGGCCAGCATTCCTGTCA  1043

seq1  AAGTCAACTGACTGATCAGAGAGACTGTAACATGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACTGACTGATCAGAGAGACTGTAACATGGAATTC  1083


seq1: chr19_48659300_48660417
seq2: B6Ng01-323A08.g_63_1176

seq1  GAATTCACAGCCAGACAATAAATAAGTCTATTTATTTTCATTTTAGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCAGACAATAAATAAGTCTATTTATTTTCATTTTAGTTAC  50

seq1  TGGTTTCAATTTTTTTATTACCGTGCATAAACAAAGATTGGAAGCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCAATTTTTTTATTACCGTGCATAAACAAAGATTGGAAGCAAAAG  100

seq1  TGCATATGCATATTTGTTTGTAATCTCCCAATTCCTGTATGCTGGCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGCATATTTGTTTGTAATCTCCCAATTCCTGTATGCTGGCTGCA  150

seq1  ACTCCTGAAATCATTTGGCCCATGGTACCAACTGCATCTGAGCTTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAAATCATTTGGCCCATGGTACCAACTGCATCTGAGCTTCCAGC  200

seq1  AAGAAGAGCAGAGAGAGCAACTGTTGGTGAGAGAGGGCAGTGCTGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGCAGAGAGAGCAACTGTTGGTGAGAGAGGGCAGTGCTGTGGTG  250

seq1  GGGGCCAACTCTCTGAGTTAGCATGGCAGCTCTCTGGTCTTCCTCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAACTCTCTGAGTTAGCATGGCAGCTCTCTGGTCTTCCTCTTCCT  300

seq1  GGCACTGATGGATTGACTCATTGTTTTTGGCAATGCAGCTCTTTCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGATGGATTGACTCATTGTTTTTGGCAATGCAGCTCTTTCTGCCT  350

seq1  GGGGCTGTGGGCAGAAAGCTGTTTGAGTCAGGCGCTCTGTACCGTGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTGGGCAGAAAGCTGTTTGAGTCAGGCGCTCTGTACCGTGCCAT  400

seq1  CTTGGCAATTCTGTGTTTTCAGCAGTTTAGTCAATGCAAGGAGTAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAATTCTGTGTTTTCAGCAGTTTAGTCAATGCAAGGAGTAAGAGA  450

seq1  AATTGTAATTGAGGCTGCTTGTCTATAAATCATGCCACAGAGAGTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATTGAGGCTGCTTGTCTATAAATCATGCCACAGAGAGTGAGCA  500

seq1  CGTCCAAATGTTGGGTCCAATAGAAACGGGTGTCCCTCGCCTGGGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAAATGTTGGGTCCAATAGAAACGGGTGTCCCTCGCCTGGGGATGG  550

seq1  GAGAGAGGTGTAAGAAAATAGTCAAAGGCATCTCTGTGGTTACTGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGTGTAAGAAAATAGTCAAAGGCATCTCTGTGGTTACTGAGCAG  600

seq1  TGCAGTAAGGAGGAAATAGAAAACAAATTCGAAGTTTCCTGGCCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAAGGAGGAAATAGAAAACAAATTCGAAGTTTCCTGGCCAAATTA  650

seq1  TGAAGTCTAGATGGGAGTCAGATGGAAGGGAGGCAAATAGCGAGAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTAGATGGGAGTCAGATGGAAGGGAGGCAAATAGCGAGAAATTA  700

seq1  TCAAACCATAGAATCCAGTTGGCGAGGGAAGGGAAGGCTCACAAACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATAGAATCCAGTTGGCGAGGGAAGGGAAGGCTCACAAACAGAG  750

seq1  CAAACCTATCCCTGACCCAGCCTCCCCTTTCCCAGCCTAACTATTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTATCCCTGACCCAGCCTCCCCTTTCCCAGCCTAACTATTTTTTA  800

seq1  TCCTGGTAATTTGTCTCTGTTATGAAAACATTGTCAGCTTAGTATACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTAATTTGTCTCTGTTATGAAAACATTGTCAGCTTAGTATACTCA  850

seq1  GGGCAATAATGTTACAAGTCAAAGAGAAACAAACAGACCACAATAACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATAATGTTACAAGTCAAAGAGAAACAAACAGACCACAATAACAAC  900

seq1  AACAACAAAACAAGAGACAAGACAGGCAGACACATCCTCTCCGTGTGGTG  950
      ||| ||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AAC-ACAAAAC-AGAGAC-AGACAGGCAGACACATCCTCTCCGTGTGGTG  947

seq1  TGCACTGCGTATGTTAAGTGCAGTCAAATAGAGCATAACTCCCGGGCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCGTATGTTAAGTGCAGTCAAATAGAGCATAACTCCCGGGCAGG  997

seq1  GATCATTTAAGACTGCTTCCATGACCCCACAGCTCTTCCTGGAAGTGCTT  1050
      |||||||| ||||||||| ||||| ||||||||||||||||| |||||||
seq2  GATCATTT-AGACTGCTT-CATGA-CCCACAGCTCTTCCTGG-AGTGCTT  1043

seq1  TGCACACTGTTCTGGTGTT-GTGTCTATAGGAGTAG-TGAGCGGGGCTTC  1098
      ||||||||||||||||||| |||||||||||||||| |||||||| ||||
seq2  TGCACACTGTTCTGGTGTTGGTGTCTATAGGAGTAGTTGAGCGGGACTTC  1093

seq1  CAA-GTAGGCTTTGCTGTTCT  1118
      ||| |||||||| ||||||||
seq2  CAAGGTAGGCTTGGCTGTTCT  1114


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