BAC Information

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BAC

Clone NameB6Ng01-323L12
Chromosome19 (Build37)
Map Location 44,125,561 - 44,126,689
singlet/doubletsinglet
Overlap geneErlin1
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44
Downstream geneChuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323L12.bB6Ng01-323L12.g
ACCGA112227GA112228
length1,1191,199
definitionB6Ng01-323L12.b B6Ng01-323L12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctagcattgtagaaaaaaatcacaaggggattttagaccctaa
gaatcagcatcatgcgttggattcccaagcataaacacacaagcaagcat
ttgtcaagcttctgacgacctaagaatctcaacctctgagggctggagaa
atggttcaatggttaaagagattcagagaaccagggtggattcctagcac
cacgtgatggctcagaactgtaaccagtcccaaggtatctgatatccttc
ctggcaccaggcatgcatgtggtgcacagacatacttgaaggcaaaaccc
ccaaatacagaaatgctgctgccattgcagagttctaaaaaaccactcgg
ttcctcatttacaaacaaaagtcaagaccaaacaaacaaaccccaaaaaa
ccaaaaaaccatctctgttctttgtttaatttctagcccttactggagaa
atcacctagaaacaaacaggatgaaggtaagcgatttcttcaggctatct
gtgaaaatgcatacaagttccctactactacagctgggacacagagatca
ccaatttctggggcatatttccagacattggtaaaatatcctcaagtttc
ccccagggaggggccaatgcttcaagttggcggtggctttcaaagcacaa
acacagaatacttcgtaacctgtaagtttctaattacctagacagaaggc
tggaatttatcctctctaacccaaaggcagagatggagaaaatcaagtat
ttgactgatctttctttgagttaagccatgtttgccttggttgggctcct
gggagacagaaattatacttataaagtagcaaagaaataattttatggct
gggggtcaccacaatatgaggaactgtattaaaggatcgcagcattagaa
aggttgagaaaggtgtgagggcctccaaactttctgcctaaaaagggcag
cttgaaaaaaaaaaggcagcttggaaaaaaaaaaaaaaaaaaagggcagc
ttgttcttggctttattttaccagagcgcctcttctccttatacaatgta
ctaagaataggcattcaatgacttcaataattgtcaacacttactaatgc
tcctcaactgccctagagt
gaattccatgcaatctccatcaagattccaaagcaattcttcacagaaac
cagaaaagtgatcttaaatttctatggaaacagagaaaggaggaggagga
ggaggaagagagtcctatatgacaacagaacataaacaaaacaaaataac
aaacaaaatctgctggaggaatcaccagcccagatttcaagctagactac
agagctatagtagtaagaagaaaatgacactggagtgaaaatagacacac
tgactaatggaataaattttgagcatctacatataagtccaaaaccctaa
atccattaacgtttgacaaagaggccaacaatatacatttgagaaaagac
gccattgtcaacgaatggtgcttggtcaaactggatagctacatgaagaa
aaataaatgaaacaaaatgcttttctctcaccctgcatgaaactcaactc
tgaatggatcatggactacaacctatgaactgataacctgaaactgacag
agatgaggaaacttggaacacacttgaacttggcacaggaaaggactgtc
tgggtgagccctcagtagtgcagacatggaaaatgggacatcgtgagact
gaaacatcaatggacacagtcttcgagaaaataggcagtccagagtctgg
gaaaaattattaccagctacacatctgacagagggttagtctctagaata
tacaaagaactcaagaactaagcatttcaaaatttttctttaatctcagc
acttgggaggagaggcaggggaattctttaactacaaggctagcctagcc
cacatactgagttccaggagagccagggtcacatagacctttagttatta
aaaaataataaatgaaggaaaaaagagaaacaaatcagatgtaaaagtgg
gacatgggaatgaagtataacgctttcaaagtaaaatacaaatgggctga
gaatttaacgttaacagggactggggagatgactcagcaattgagactaa
ttgttgctttgcaagggaccttattcagcgctcagcacccacaatagcat
cttcataccaattgtaactcacttcaggggatgcaatgcccttcttctga
ccttctggtgaaccaagcatgcattgggtgcctatgtaacgaacgcatat
ggaataaaaatattaagtcttgaaaaccaaattttaaaacaggttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44125561_44126689
seq2: B6Ng01-323L12.b_48_1166

seq1  GAATTCTCTAGCATTGTAGAAAAAAATCACAAGGGGATTTTAGACCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGCATTGTAGAAAAAAATCACAAGGGGATTTTAGACCCTAA  50

seq1  GAATCAGCATCATGCGTTGGATTCCCAAGCATAAACACACAAGCAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCATCATGCGTTGGATTCCCAAGCATAAACACACAAGCAAGCAT  100

seq1  TTGTCAAGCTTCTGACGACCTAAGAATCTCAACCTCTGAGGGCTGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGCTTCTGACGACCTAAGAATCTCAACCTCTGAGGGCTGGAGAA  150

seq1  ATGGTTCAATGGTTAAAGAGATTCAGAGAACCAGGGTGGATTCCTAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAATGGTTAAAGAGATTCAGAGAACCAGGGTGGATTCCTAGCAC  200

seq1  CACGTGATGGCTCAGAACTGTAACCAGTCCCAAGGTATCTGATATCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGATGGCTCAGAACTGTAACCAGTCCCAAGGTATCTGATATCCTTC  250

seq1  CTGGCACCAGGCATGCATGTGGTGCACAGACATACTTGAAGGCAAAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCAGGCATGCATGTGGTGCACAGACATACTTGAAGGCAAAACCC  300

seq1  CCAAATACAGAAATGCTGCTGCCATTGCAGAGTTCTAAAAAACCACTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACAGAAATGCTGCTGCCATTGCAGAGTTCTAAAAAACCACTCGG  350

seq1  TTCCTCATTTACAAACAAAAGTCAAGACCAAACAAACAAACCCCAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTTACAAACAAAAGTCAAGACCAAACAAACAAACCCCAAAAAA  400

seq1  CCAAAAAACCATCTCTGTTCTTTGTTTAATTTCTAGCCCTTACTGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACCATCTCTGTTCTTTGTTTAATTTCTAGCCCTTACTGGAGAA  450

seq1  ATCACCTAGAAACAAACAGGATGAAGGTAAGCGATTTCTTCAGGCTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTAGAAACAAACAGGATGAAGGTAAGCGATTTCTTCAGGCTATCT  500

seq1  GTGAAAATGCATACAAGTTCCCTACTACTACAGCTGGGACACAGAGATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGCATACAAGTTCCCTACTACTACAGCTGGGACACAGAGATCA  550

seq1  CCAATTTCTGGGGCATATTTCCAGACATTGGTAAAATATCCTCAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCTGGGGCATATTTCCAGACATTGGTAAAATATCCTCAAGTTTC  600

seq1  CCCCAGGGAGGGGCCAATGCTTCAAGTTGGCGGTGGCTTTCAAAGCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGAGGGGCCAATGCTTCAAGTTGGCGGTGGCTTTCAAAGCACAA  650

seq1  ACACAGAATACTTCGTAACCTGTAAGTTTCTAATTACCTAGACAGAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAATACTTCGTAACCTGTAAGTTTCTAATTACCTAGACAGAAGGC  700

seq1  TGGAATTTATCCTCTCTAACCCAAAGGCAGAGATGGAGAAAATCAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTATCCTCTCTAACCCAAAGGCAGAGATGGAGAAAATCAAGTAT  750

seq1  TTGACTGATCTTTCTTTGAGTTAAGCCATGTTTGCCTTGGTTGGGCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGATCTTTCTTTGAGTTAAGCCATGTTTGCCTTGGTTGGGCTCCT  800

seq1  GGGAGACAGAAATTATACTTATAAAGTAGCAAAGAAATAATTTTATGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAGAAATTATACTTATAAAGTAGCAAAGAAATAATTTTATGGCT  850

seq1  GGGGGTCACCACAATATGAGGAACTGTATTAAAGGATCGCAGCATTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCACCACAATATGAGGAACTGTATTAAAGGATCGCAGCATTAGAA  900

seq1  AGGTTGAG-AAGGTGTGAGGGCCTCCAAACTTTCTGCCTAAAAAGGGCAG  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGAAAGGTGTGAGGGCCTCCAAACTTTCTGCCTAAAAAGGGCAG  950

seq1  CTTGGAAAAAAAAAAGGGCAGCTTGGGAAAAAAAAAAAAAAAAAAGGGCA  999
      ||||  ||||||||| |||||||||| |||||||||||||||||||||||
seq2  CTTG--AAAAAAAAAAGGCAGCTTGGAAAAAAAAAAAAAAAAAAAGGGCA  998

seq1  GCTTGGTTCTTGGCTTTATTTTACCAGAGCG-CTC-TCTCCTTATACAAT  1047
      |||| |||||||||||||||||||||||||| ||| ||||||||||||||
seq2  GCTT-GTTCTTGGCTTTATTTTACCAGAGCGCCTCTTCTCCTTATACAAT  1047

seq1  GTACTTAAGAATAGGGGCATTTTCAATGACTTC-ATAATTGTCAAACACT  1096
      |||| ||||||||  ||||  |||||||||||| ||||||||| ||||| 
seq2  GTAC-TAAGAATA--GGCA--TTCAATGACTTCAATAATTGTC-AACAC-  1090

seq1  TTACTAATGGCTCCTCAAAACTGCCCCTAGAGT  1129
      |||||||| |||||||  ||||| |||||||||
seq2  TTACTAAT-GCTCCTC--AACTG-CCCTAGAGT  1119